Metadata-Version: 2.1
Name: ena-utils
Version: 0.1.2
Summary: A simple CLI toolbox to use the European Nucleotide Archive (ENA)
Home-page: https://github.com/auwerxlab/ena-utils
Author: Laboratory of Integrative System Physiology (LISP) at EPFL
Author-email: alexis.rapin@epfl.ch
License: Apache License 2.0
Download-URL: https://github.com/auwerxlab/ena-utils/archive/v0.1.2.tar.gz
Description: =================================================================================================
        A simple CLI toolbox to use the `European Nucleotide Archive (ENA) <https://www.ebi.ac.uk/ena/>`_
        =================================================================================================
        
        .. image:: https://img.shields.io/badge/license-apache2-brightgreen.svg
           :target: https://github.com/auwerxlab/ena-utils/blob/master/LICENSE
        
        .. image:: https://img.shields.io/github/v/release/auwerxlab/ena-utils
           :target: https://github.com/auwerxlab/ena-utils/releases
        
        .. image:: https://img.shields.io/pypi/v/ena-utils
           :target: https://pypi.python.org/pypi/ena-utils
        
        .. image:: https://readthedocs.org/projects/ena-utils/badge/?version=latest
           :target: https://ena-utils.readthedocs.io/en/latest/?badge=latest
           :alt: Documentation Status
        
        
        **ena-utils** is a small python package that provides a CLI to submit nucleotides sequences to the `European Nucleotide Archive (ENA) <https://www.ebi.ac.uk/ena/>`_.
        
        Supported submission types
        ==========================
        
        - Reads
        
        Features
        ========
        
        - File upload
        - Study registration
        - Experiment registration
        - Run registration
        - Sample registration
        
        Requirements
        ============
        
        - Python3
        - Webin account
        
        Installation
        ============
        
        The latest release is available on PyPI and can be installed using ``pip``:
        
        ::
        
            $ pip install ena-utils
        
        Isolated environments using ``pipx``
        ------------------------------------
        
        Install and execute ena-utils in an isolated environment using ``pipx``.
        
        `Install pipx <https://github.com/pipxproject/pipx#install-pipx>`_
        and make sure that the ``$PATH`` is correctly configured.
        
        ::
        
            $ python3 -m pip install --user pipx
            $ pipx ensurepath
        
        Once ``pipx`` is installed use following command to install ``ena-utils``.
        
        ::
        
            $ pipx install ena-utils
            $ which ena-utils
            ~/.local/bin/ena-utils
        
        Usage
        =====
        
        The latest documentation is available at `https://readthedocs.org <https://ena-utils.readthedocs.io/en/latest/>`_.
        
Platform: UNKNOWN
Description-Content-Type: text/x-rst
