LICENSE
MANIFEST.in
README.md
setup.py
IRTools/Constants.py
IRTools/__init__.py
IRTools/annotation_cmd.py
IRTools/diff_cmd.py
IRTools/quant_IRC.py
IRTools/quant_IRI.py
IRTools/quant_cmd.py
IRTools.egg-info/PKG-INFO
IRTools.egg-info/SOURCES.txt
IRTools.egg-info/dependency_links.txt
IRTools.egg-info/requires.txt
IRTools.egg-info/top_level.txt
IRTools/data/hg19_IR_annotation.gtf.gz
IRTools/data/mm9_IR_annotation.gtf.gz
IRTools/utility/RSeQC-4.0.0/MANIFEST.in
IRTools/utility/RSeQC-4.0.0/PKG-INFO
IRTools/utility/RSeQC-4.0.0/distribute_setup.py
IRTools/utility/RSeQC-4.0.0/setup.cfg
IRTools/utility/RSeQC-4.0.0/setup.py
IRTools/utility/RSeQC-4.0.0/doc/CONTACTS
IRTools/utility/RSeQC-4.0.0/doc/COPYING
IRTools/utility/RSeQC-4.0.0/doc/INSTALL
IRTools/utility/RSeQC-4.0.0/doc/Manual
IRTools/utility/RSeQC-4.0.0/doc/THANKS
IRTools/utility/RSeQC-4.0.0/gene_model/hg19_UCSC_knownGene.bed
IRTools/utility/RSeQC-4.0.0/gene_model/mm9_UCSC_knownGene.bed
IRTools/utility/RSeQC-4.0.0/lib/psyco_full.py
IRTools/utility/RSeQC-4.0.0/lib/RSeQC.egg-info/PKG-INFO
IRTools/utility/RSeQC-4.0.0/lib/RSeQC.egg-info/SOURCES.txt
IRTools/utility/RSeQC-4.0.0/lib/RSeQC.egg-info/dependency_links.txt
IRTools/utility/RSeQC-4.0.0/lib/RSeQC.egg-info/not-zip-safe
IRTools/utility/RSeQC-4.0.0/lib/RSeQC.egg-info/requires.txt
IRTools/utility/RSeQC-4.0.0/lib/RSeQC.egg-info/top_level.txt
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/BED.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/FrameKmer.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/SAM.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/__init__.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/annoGene.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/bam_cigar.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/changePoint.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/cigar.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/dotProduct.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/fasta.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/getBamFiles.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/mystat.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/orf.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/quantile.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/twoList.py
IRTools/utility/RSeQC-4.0.0/lib/qcmodule/wiggle.py
IRTools/utility/RSeQC-4.0.0/scripts/FPKM-UQ.py
IRTools/utility/RSeQC-4.0.0/scripts/FPKM_count.py
IRTools/utility/RSeQC-4.0.0/scripts/RNA_fragment_size.py
IRTools/utility/RSeQC-4.0.0/scripts/RPKM_saturation.py
IRTools/utility/RSeQC-4.0.0/scripts/bam2fq.py
IRTools/utility/RSeQC-4.0.0/scripts/bam2wig.py
IRTools/utility/RSeQC-4.0.0/scripts/bam_stat.py
IRTools/utility/RSeQC-4.0.0/scripts/clipping_profile.py
IRTools/utility/RSeQC-4.0.0/scripts/deletion_profile.py
IRTools/utility/RSeQC-4.0.0/scripts/divide_bam.py
IRTools/utility/RSeQC-4.0.0/scripts/geneBody_coverage.py
IRTools/utility/RSeQC-4.0.0/scripts/geneBody_coverage2.py
IRTools/utility/RSeQC-4.0.0/scripts/infer_experiment.py
IRTools/utility/RSeQC-4.0.0/scripts/inner_distance.py
IRTools/utility/RSeQC-4.0.0/scripts/insertion_profile.py
IRTools/utility/RSeQC-4.0.0/scripts/junction_annotation.py
IRTools/utility/RSeQC-4.0.0/scripts/junction_saturation.py
IRTools/utility/RSeQC-4.0.0/scripts/mismatch_profile.py
IRTools/utility/RSeQC-4.0.0/scripts/normalize_bigwig.py
IRTools/utility/RSeQC-4.0.0/scripts/overlay_bigwig.py
IRTools/utility/RSeQC-4.0.0/scripts/read_GC.py
IRTools/utility/RSeQC-4.0.0/scripts/read_NVC.py
IRTools/utility/RSeQC-4.0.0/scripts/read_distribution.py
IRTools/utility/RSeQC-4.0.0/scripts/read_duplication.py
IRTools/utility/RSeQC-4.0.0/scripts/read_hexamer.py
IRTools/utility/RSeQC-4.0.0/scripts/read_quality.py
IRTools/utility/RSeQC-4.0.0/scripts/split_bam.py
IRTools/utility/RSeQC-4.0.0/scripts/split_paired_bam.py
IRTools/utility/RSeQC-4.0.0/scripts/tin.py
bin/IRTools