README.md
setup.py
rnaindel/__init__.py
rnaindel/rnaindel.py
rnaindel/version.py
rnaindel.egg-info/PKG-INFO
rnaindel.egg-info/SOURCES.txt
rnaindel.egg-info/dependency_links.txt
rnaindel.egg-info/entry_points.txt
rnaindel.egg-info/requires.txt
rnaindel.egg-info/top_level.txt
rnaindel/bambino_lib/__init__.py
rnaindel/bambino_lib/bambino-1.0.jar
rnaindel/bambino_lib/bambino.py
rnaindel/bambino_lib/mysql-connector-java-5.1.10.jar
rnaindel/bambino_lib/picard.jar
rnaindel/bambino_lib/third_party.jar
rnaindel/nonsomatic_lib/__init__.py
rnaindel/nonsomatic_lib/annotate_recurrence.py
rnaindel/nonsomatic_lib/filterate_by_panel.py
rnaindel/nonsomatic_lib/make_non_somatic_panel.py
rnaindel/nonsomatic_lib/variant.py
rnaindel/rnaindel_lib/__init__.py
rnaindel/rnaindel_lib/indel_annotator.py
rnaindel/rnaindel_lib/indel_classifier.py
rnaindel/rnaindel_lib/indel_curator.py
rnaindel/rnaindel_lib/indel_equivalence_solver.py
rnaindel/rnaindel_lib/indel_feature_reporter.py
rnaindel/rnaindel_lib/indel_features.py
rnaindel/rnaindel_lib/indel_postprocessor.py
rnaindel/rnaindel_lib/indel_preprocessor.py
rnaindel/rnaindel_lib/indel_protein_processor.py
rnaindel/rnaindel_lib/indel_reclassifier.py
rnaindel/rnaindel_lib/indel_rescuer.py
rnaindel/rnaindel_lib/indel_sequence.py
rnaindel/rnaindel_lib/indel_sequence_processor.py
rnaindel/rnaindel_lib/indel_snp_annotator.py
rnaindel/rnaindel_lib/indel_softclip_realigner.py
rnaindel/rnaindel_lib/indel_vcf.py
rnaindel/rnaindel_lib/indel_vcf_preprocessor.py
rnaindel/rnaindel_lib/indel_vcf_writer.py
rnaindel/rnaindel_lib/input_validator.py
rnaindel/rnaindel_lib/left_aligner.py
rnaindel/rnaindel_lib/most_common.py
rnaindel/rnaindel_lib/sequence_properties.py
rnaindel/training_lib/__init__.py
rnaindel/training_lib/downsampler.py
rnaindel/training_lib/feature_selector.py
rnaindel/training_lib/model_selection.py
rnaindel/training_lib/model_updater.py
rnaindel/training_lib/parameter_tuner.py
rnaindel/training_lib/result_reporter.py