LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
quantpi/__about__.py
quantpi/__init__.py
quantpi/aligner.py
quantpi/configer.py
quantpi/corer.py
quantpi/profiler.py
quantpi/qcer.py
quantpi/sampler.py
quantpi/simulator.py
quantpi/tooler.py
quantpi.egg-info/PKG-INFO
quantpi.egg-info/SOURCES.txt
quantpi.egg-info/dependency_links.txt
quantpi.egg-info/entry_points.txt
quantpi.egg-info/requires.txt
quantpi.egg-info/top_level.txt
quantpi/config/config.yaml
quantpi/envs/biobakery2.yaml
quantpi/envs/biobakery3.yaml
quantpi/envs/general.yaml
quantpi/envs/kmcp.yaml
quantpi/envs/kraken2.yaml
quantpi/envs/simulate.yaml
quantpi/profiles/generic/cluster_config.yaml
quantpi/profiles/generic/config.yaml
quantpi/profiles/generic/key_mapping.yaml
quantpi/profiles/generic/lsf_status.py
quantpi/profiles/generic/pbs_status.py
quantpi/profiles/generic/scheduler.py
quantpi/profiles/generic/slurm_status.py
quantpi/profiles/lsf/CookieCutter.py
quantpi/profiles/lsf/OSLayer.py
quantpi/profiles/lsf/config.yaml
quantpi/profiles/lsf/lsf_config.py
quantpi/profiles/lsf/lsf_jobscript.sh
quantpi/profiles/lsf/lsf_status.py
quantpi/profiles/lsf/lsf_submit.py
quantpi/profiles/lsf/memory_units.py
quantpi/profiles/pbs-torque/config.yaml
quantpi/profiles/pbs-torque/pbs-jobscript.sh
quantpi/profiles/pbs-torque/pbs-status.py
quantpi/profiles/pbs-torque/pbs-submit.py
quantpi/profiles/sge/cluster.yaml
quantpi/profiles/sge/config.yaml
quantpi/profiles/sge/sge-jobscript.sh
quantpi/profiles/sge/sge-status.py
quantpi/profiles/sge/sge-submit.py
quantpi/profiles/slurm/CookieCutter.py
quantpi/profiles/slurm/cluster.yaml
quantpi/profiles/slurm/config.yaml
quantpi/profiles/slurm/settings.json
quantpi/profiles/slurm/slurm-jobscript.sh
quantpi/profiles/slurm/slurm-status.py
quantpi/profiles/slurm/slurm-submit.py
quantpi/profiles/slurm/slurm_utils.py
quantpi/rules/profiling_coverm.smk
quantpi/rules/profiling_custom.smk
quantpi/rules/profiling_dna.smk
quantpi/rules/profiling_function.smk
quantpi/rules/profiling_genomecov.smk
quantpi/rules/profiling_kmer.smk
quantpi/rules/profiling_marker.smk
quantpi/rules/qcreport.smk
quantpi/rules/raw.smk
quantpi/rules/rmhost.smk
quantpi/rules/simulate.smk
quantpi/rules/trimming.smk
quantpi/snakefiles/profiling_wf.smk
quantpi/wrappers/humann2_db_wrapper.py
quantpi/wrappers/humann2_postprocess_wrapper.py
quantpi/wrappers/humann3_db_wrapper.py
quantpi/wrappers/humann3_postprocess_wrapper.py
quantpi/wrappers/metaphlan2_wrapper.py
quantpi/wrappers/misc.py