.pre-commit-config.yaml
CHANGES
LICENSE.md
MANIFEST.in
README.md
dev-requirements.txt
setup.cfg
setup.py
docs/Makefile
docs/changes_link.md
docs/conf.py
docs/docs-requirements.txt
docs/index.md
docs/make.bat
docs/quickstart.md
docs/api/alignmentmgr.md
docs/api/alignmenttuple.md
docs/api/index.md
docs/api/printer.md
ssw/__init__.py
ssw/alignmentmgr.pyx
ssw/alignmenttuple.py
ssw/printer.py
ssw/../tests/__init__.py
ssw/../tests/test_ssw.py
ssw/lib/str_util.c
ssw/lib/str_util.h
ssw/lib/CSSWL/README.md
ssw/lib/CSSWL/src/Makefile
ssw/lib/CSSWL/src/example.c
ssw/lib/CSSWL/src/example.cpp
ssw/lib/CSSWL/src/kseq.h
ssw/lib/CSSWL/src/main.c
ssw/lib/CSSWL/src/sse2neon.h
ssw/lib/CSSWL/src/ssw.c
ssw/lib/CSSWL/src/ssw.h
ssw/lib/CSSWL/src/ssw_cpp.cpp
ssw/lib/CSSWL/src/ssw_cpp.h
ssw_py.egg-info/PKG-INFO
ssw_py.egg-info/SOURCES.txt
ssw_py.egg-info/dependency_links.txt
ssw_py.egg-info/not-zip-safe
ssw_py.egg-info/top_level.txt
tests/__init__.py
tests/test_ssw.py