CHANGES.rst
LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.py
niworkflows/__about__.py
niworkflows/__init__.py
niworkflows/due.py
niworkflows.egg-info/PKG-INFO
niworkflows.egg-info/SOURCES.txt
niworkflows.egg-info/dependency_links.txt
niworkflows.egg-info/not-zip-safe
niworkflows.egg-info/requires.txt
niworkflows.egg-info/top_level.txt
niworkflows/anat/__init__.py
niworkflows/anat/skullstrip.py
niworkflows/common/__init__.py
niworkflows/common/orient.py
niworkflows/data/__init__.py
niworkflows/data/epi-mni_registration_precise_000.json
niworkflows/data/epi-mni_registration_precise_001.json
niworkflows/data/epi-mni_registration_precise_002.json
niworkflows/data/epi-mni_registration_testing_000.json
niworkflows/data/epi-mni_registration_testing_001.json
niworkflows/data/epi-mni_registration_testing_002.json
niworkflows/data/getters.py
niworkflows/data/t1-mni_registration_fast_000.json
niworkflows/data/t1-mni_registration_precise_000.json
niworkflows/data/t1-mni_registration_precise_001.json
niworkflows/data/t1-mni_registration_precise_002.json
niworkflows/data/t1-mni_registration_testing_000.json
niworkflows/data/t1-mni_registration_testing_001.json
niworkflows/data/t1-mni_registration_testing_002.json
niworkflows/data/utils.py
niworkflows/dwi/__init__.py
niworkflows/func/__init__.py
niworkflows/interfaces/__init__.py
niworkflows/interfaces/fixes.py
niworkflows/interfaces/masks.py
niworkflows/interfaces/mni.py
niworkflows/interfaces/plotting.py
niworkflows/interfaces/registration.py
niworkflows/interfaces/report_base.py
niworkflows/interfaces/segmentation.py
niworkflows/interfaces/utils.py
niworkflows/nipype/__init__.py
niworkflows/nipype/conftest.py
niworkflows/nipype/info.py
niworkflows/nipype/pkg_info.py
niworkflows/nipype/refs.py
niworkflows/nipype/algorithms/__init__.py
niworkflows/nipype/algorithms/confounds.py
niworkflows/nipype/algorithms/icc.py
niworkflows/nipype/algorithms/mesh.py
niworkflows/nipype/algorithms/metrics.py
niworkflows/nipype/algorithms/misc.py
niworkflows/nipype/algorithms/modelgen.py
niworkflows/nipype/algorithms/rapidart.py
niworkflows/nipype/algorithms/stats.py
niworkflows/nipype/caching/__init__.py
niworkflows/nipype/caching/memory.py
niworkflows/nipype/external/__init__.py
niworkflows/nipype/external/cloghandler.py
niworkflows/nipype/external/d3.js
niworkflows/nipype/external/due.py
niworkflows/nipype/external/fsl_imglob.py
niworkflows/nipype/external/portalocker.py
niworkflows/nipype/interfaces/__init__.py
niworkflows/nipype/interfaces/bru2nii.py
niworkflows/nipype/interfaces/c3.py
niworkflows/nipype/interfaces/dcm2nii.py
niworkflows/nipype/interfaces/dcmstack.py
niworkflows/nipype/interfaces/dynamic_slicer.py
niworkflows/nipype/interfaces/io.py
niworkflows/nipype/interfaces/matlab.py
niworkflows/nipype/interfaces/meshfix.py
niworkflows/nipype/interfaces/nilearn.py
niworkflows/nipype/interfaces/petpvc.py
niworkflows/nipype/interfaces/quickshear.py
niworkflows/nipype/interfaces/vtkbase.py
niworkflows/nipype/interfaces/afni/__init__.py
niworkflows/nipype/interfaces/afni/base.py
niworkflows/nipype/interfaces/afni/model.py
niworkflows/nipype/interfaces/afni/preprocess.py
niworkflows/nipype/interfaces/afni/svm.py
niworkflows/nipype/interfaces/afni/utils.py
niworkflows/nipype/interfaces/ants/__init__.py
niworkflows/nipype/interfaces/ants/base.py
niworkflows/nipype/interfaces/ants/legacy.py
niworkflows/nipype/interfaces/ants/registration.py
niworkflows/nipype/interfaces/ants/resampling.py
niworkflows/nipype/interfaces/ants/segmentation.py
niworkflows/nipype/interfaces/ants/utils.py
niworkflows/nipype/interfaces/ants/visualization.py
niworkflows/nipype/interfaces/base/__init__.py
niworkflows/nipype/interfaces/base/core.py
niworkflows/nipype/interfaces/base/specs.py
niworkflows/nipype/interfaces/base/support.py
niworkflows/nipype/interfaces/base/traits_extension.py
niworkflows/nipype/interfaces/brainsuite/__init__.py
niworkflows/nipype/interfaces/brainsuite/brainsuite.py
niworkflows/nipype/interfaces/camino/__init__.py
niworkflows/nipype/interfaces/camino/calib.py
niworkflows/nipype/interfaces/camino/connectivity.py
niworkflows/nipype/interfaces/camino/convert.py
niworkflows/nipype/interfaces/camino/dti.py
niworkflows/nipype/interfaces/camino/odf.py
niworkflows/nipype/interfaces/camino/utils.py
niworkflows/nipype/interfaces/camino2trackvis/__init__.py
niworkflows/nipype/interfaces/camino2trackvis/convert.py
niworkflows/nipype/interfaces/cmtk/__init__.py
niworkflows/nipype/interfaces/cmtk/base.py
niworkflows/nipype/interfaces/cmtk/cmtk.py
niworkflows/nipype/interfaces/cmtk/convert.py
niworkflows/nipype/interfaces/cmtk/nbs.py
niworkflows/nipype/interfaces/cmtk/nx.py
niworkflows/nipype/interfaces/cmtk/parcellation.py
niworkflows/nipype/interfaces/diffusion_toolkit/__init__.py
niworkflows/nipype/interfaces/diffusion_toolkit/base.py
niworkflows/nipype/interfaces/diffusion_toolkit/dti.py
niworkflows/nipype/interfaces/diffusion_toolkit/odf.py
niworkflows/nipype/interfaces/diffusion_toolkit/postproc.py
niworkflows/nipype/interfaces/dipy/__init__.py
niworkflows/nipype/interfaces/dipy/anisotropic_power.py
niworkflows/nipype/interfaces/dipy/base.py
niworkflows/nipype/interfaces/dipy/preprocess.py
niworkflows/nipype/interfaces/dipy/reconstruction.py
niworkflows/nipype/interfaces/dipy/setup.py
niworkflows/nipype/interfaces/dipy/simulate.py
niworkflows/nipype/interfaces/dipy/tensors.py
niworkflows/nipype/interfaces/dipy/tracks.py
niworkflows/nipype/interfaces/dtitk/__init__.py
niworkflows/nipype/interfaces/dtitk/base.py
niworkflows/nipype/interfaces/dtitk/registration.py
niworkflows/nipype/interfaces/dtitk/utils.py
niworkflows/nipype/interfaces/elastix/__init__.py
niworkflows/nipype/interfaces/elastix/base.py
niworkflows/nipype/interfaces/elastix/registration.py
niworkflows/nipype/interfaces/elastix/utils.py
niworkflows/nipype/interfaces/freesurfer/__init__.py
niworkflows/nipype/interfaces/freesurfer/base.py
niworkflows/nipype/interfaces/freesurfer/longitudinal.py
niworkflows/nipype/interfaces/freesurfer/model.py
niworkflows/nipype/interfaces/freesurfer/preprocess.py
niworkflows/nipype/interfaces/freesurfer/registration.py
niworkflows/nipype/interfaces/freesurfer/utils.py
niworkflows/nipype/interfaces/fsl/__init__.py
niworkflows/nipype/interfaces/fsl/aroma.py
niworkflows/nipype/interfaces/fsl/base.py
niworkflows/nipype/interfaces/fsl/dti.py
niworkflows/nipype/interfaces/fsl/epi.py
niworkflows/nipype/interfaces/fsl/fix.py
niworkflows/nipype/interfaces/fsl/maths.py
niworkflows/nipype/interfaces/fsl/model.py
niworkflows/nipype/interfaces/fsl/possum.py
niworkflows/nipype/interfaces/fsl/preprocess.py
niworkflows/nipype/interfaces/fsl/utils.py
niworkflows/nipype/interfaces/minc/__init__.py
niworkflows/nipype/interfaces/minc/base.py
niworkflows/nipype/interfaces/minc/minc.py
niworkflows/nipype/interfaces/minc/testdata.py
niworkflows/nipype/interfaces/mipav/__init__.py
niworkflows/nipype/interfaces/mipav/developer.py
niworkflows/nipype/interfaces/mipav/generate_classes.py
niworkflows/nipype/interfaces/mne/__init__.py
niworkflows/nipype/interfaces/mne/base.py
niworkflows/nipype/interfaces/mrtrix/__init__.py
niworkflows/nipype/interfaces/mrtrix/convert.py
niworkflows/nipype/interfaces/mrtrix/preprocess.py
niworkflows/nipype/interfaces/mrtrix/tensors.py
niworkflows/nipype/interfaces/mrtrix/tracking.py
niworkflows/nipype/interfaces/mrtrix3/__init__.py
niworkflows/nipype/interfaces/mrtrix3/base.py
niworkflows/nipype/interfaces/mrtrix3/connectivity.py
niworkflows/nipype/interfaces/mrtrix3/preprocess.py
niworkflows/nipype/interfaces/mrtrix3/reconst.py
niworkflows/nipype/interfaces/mrtrix3/tracking.py
niworkflows/nipype/interfaces/mrtrix3/utils.py
niworkflows/nipype/interfaces/niftyfit/__init__.py
niworkflows/nipype/interfaces/niftyfit/asl.py
niworkflows/nipype/interfaces/niftyfit/base.py
niworkflows/nipype/interfaces/niftyfit/dwi.py
niworkflows/nipype/interfaces/niftyfit/qt1.py
niworkflows/nipype/interfaces/niftyreg/__init__.py
niworkflows/nipype/interfaces/niftyreg/base.py
niworkflows/nipype/interfaces/niftyreg/reg.py
niworkflows/nipype/interfaces/niftyreg/regutils.py
niworkflows/nipype/interfaces/niftyseg/__init__.py
niworkflows/nipype/interfaces/niftyseg/base.py
niworkflows/nipype/interfaces/niftyseg/em.py
niworkflows/nipype/interfaces/niftyseg/label_fusion.py
niworkflows/nipype/interfaces/niftyseg/lesions.py
niworkflows/nipype/interfaces/niftyseg/maths.py
niworkflows/nipype/interfaces/niftyseg/patchmatch.py
niworkflows/nipype/interfaces/niftyseg/stats.py
niworkflows/nipype/interfaces/nipy/__init__.py
niworkflows/nipype/interfaces/nipy/base.py
niworkflows/nipype/interfaces/nipy/model.py
niworkflows/nipype/interfaces/nipy/preprocess.py
niworkflows/nipype/interfaces/nipy/utils.py
niworkflows/nipype/interfaces/nitime/__init__.py
niworkflows/nipype/interfaces/nitime/analysis.py
niworkflows/nipype/interfaces/nitime/base.py
niworkflows/nipype/interfaces/semtools/__init__.py
niworkflows/nipype/interfaces/semtools/converters.py
niworkflows/nipype/interfaces/semtools/featurecreator.py
niworkflows/nipype/interfaces/semtools/brains/__init__.py
niworkflows/nipype/interfaces/semtools/brains/classify.py
niworkflows/nipype/interfaces/semtools/brains/segmentation.py
niworkflows/nipype/interfaces/semtools/brains/utilities.py
niworkflows/nipype/interfaces/semtools/diffusion/__init__.py
niworkflows/nipype/interfaces/semtools/diffusion/diffusion.py
niworkflows/nipype/interfaces/semtools/diffusion/gtract.py
niworkflows/nipype/interfaces/semtools/diffusion/maxcurvature.py
niworkflows/nipype/interfaces/semtools/diffusion/tractography/__init__.py
niworkflows/nipype/interfaces/semtools/diffusion/tractography/commandlineonly.py
niworkflows/nipype/interfaces/semtools/diffusion/tractography/fiberprocess.py
niworkflows/nipype/interfaces/semtools/diffusion/tractography/fibertrack.py
niworkflows/nipype/interfaces/semtools/diffusion/tractography/ukftractography.py
niworkflows/nipype/interfaces/semtools/filtering/__init__.py
niworkflows/nipype/interfaces/semtools/filtering/denoising.py
niworkflows/nipype/interfaces/semtools/filtering/featuredetection.py
niworkflows/nipype/interfaces/semtools/legacy/__init__.py
niworkflows/nipype/interfaces/semtools/legacy/registration.py
niworkflows/nipype/interfaces/semtools/registration/__init__.py
niworkflows/nipype/interfaces/semtools/registration/brainsfit.py
niworkflows/nipype/interfaces/semtools/registration/brainsresample.py
niworkflows/nipype/interfaces/semtools/registration/brainsresize.py
niworkflows/nipype/interfaces/semtools/registration/specialized.py
niworkflows/nipype/interfaces/semtools/segmentation/__init__.py
niworkflows/nipype/interfaces/semtools/segmentation/specialized.py
niworkflows/nipype/interfaces/semtools/testing/__init__.py
niworkflows/nipype/interfaces/semtools/testing/featuredetection.py
niworkflows/nipype/interfaces/semtools/testing/generateaveragelmkfile.py
niworkflows/nipype/interfaces/semtools/testing/landmarkscompare.py
niworkflows/nipype/interfaces/semtools/utilities/__init__.py
niworkflows/nipype/interfaces/semtools/utilities/brains.py
niworkflows/nipype/interfaces/slicer/__init__.py
niworkflows/nipype/interfaces/slicer/base.py
niworkflows/nipype/interfaces/slicer/converters.py
niworkflows/nipype/interfaces/slicer/generate_classes.py
niworkflows/nipype/interfaces/slicer/surface.py
niworkflows/nipype/interfaces/slicer/utilities.py
niworkflows/nipype/interfaces/slicer/diffusion/__init__.py
niworkflows/nipype/interfaces/slicer/diffusion/diffusion.py
niworkflows/nipype/interfaces/slicer/filtering/__init__.py
niworkflows/nipype/interfaces/slicer/filtering/arithmetic.py
niworkflows/nipype/interfaces/slicer/filtering/checkerboardfilter.py
niworkflows/nipype/interfaces/slicer/filtering/denoising.py
niworkflows/nipype/interfaces/slicer/filtering/extractskeleton.py
niworkflows/nipype/interfaces/slicer/filtering/histogrammatching.py
niworkflows/nipype/interfaces/slicer/filtering/imagelabelcombine.py
niworkflows/nipype/interfaces/slicer/filtering/morphology.py
niworkflows/nipype/interfaces/slicer/filtering/n4itkbiasfieldcorrection.py
niworkflows/nipype/interfaces/slicer/filtering/resamplescalarvectordwivolume.py
niworkflows/nipype/interfaces/slicer/filtering/thresholdscalarvolume.py
niworkflows/nipype/interfaces/slicer/filtering/votingbinaryholefillingimagefilter.py
niworkflows/nipype/interfaces/slicer/legacy/__init__.py
niworkflows/nipype/interfaces/slicer/legacy/converters.py
niworkflows/nipype/interfaces/slicer/legacy/filtering.py
niworkflows/nipype/interfaces/slicer/legacy/registration.py
niworkflows/nipype/interfaces/slicer/legacy/segmentation.py
niworkflows/nipype/interfaces/slicer/legacy/diffusion/__init__.py
niworkflows/nipype/interfaces/slicer/legacy/diffusion/denoising.py
niworkflows/nipype/interfaces/slicer/quantification/__init__.py
niworkflows/nipype/interfaces/slicer/quantification/changequantification.py
niworkflows/nipype/interfaces/slicer/quantification/petstandarduptakevaluecomputation.py
niworkflows/nipype/interfaces/slicer/registration/__init__.py
niworkflows/nipype/interfaces/slicer/registration/brainsfit.py
niworkflows/nipype/interfaces/slicer/registration/brainsresample.py
niworkflows/nipype/interfaces/slicer/registration/specialized.py
niworkflows/nipype/interfaces/slicer/segmentation/__init__.py
niworkflows/nipype/interfaces/slicer/segmentation/simpleregiongrowingsegmentation.py
niworkflows/nipype/interfaces/slicer/segmentation/specialized.py
niworkflows/nipype/interfaces/spm/__init__.py
niworkflows/nipype/interfaces/spm/base.py
niworkflows/nipype/interfaces/spm/model.py
niworkflows/nipype/interfaces/spm/preprocess.py
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niworkflows/nipype/interfaces/utility/__init__.py
niworkflows/nipype/interfaces/utility/base.py
niworkflows/nipype/interfaces/utility/csv.py
niworkflows/nipype/interfaces/utility/wrappers.py
niworkflows/nipype/interfaces/vista/__init__.py
niworkflows/nipype/interfaces/vista/vista.py
niworkflows/nipype/pipeline/__init__.py
niworkflows/nipype/pipeline/engine/__init__.py
niworkflows/nipype/pipeline/engine/base.py
niworkflows/nipype/pipeline/engine/nodes.py
niworkflows/nipype/pipeline/engine/report_template.html
niworkflows/nipype/pipeline/engine/utils.py
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niworkflows/nipype/pipeline/plugins/__init__.py
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niworkflows/nipype/scripts/__init__.py
niworkflows/nipype/scripts/cli.py
niworkflows/nipype/scripts/crash_files.py
niworkflows/nipype/scripts/instance.py
niworkflows/nipype/scripts/utils.py
niworkflows/nipype/sphinxext/__init__.py
niworkflows/nipype/sphinxext/plot_workflow.py
niworkflows/nipype/testing/__init__.py
niworkflows/nipype/testing/decorators.py
niworkflows/nipype/testing/fixtures.py
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niworkflows/nipype/utils/__init__.py
niworkflows/nipype/utils/config.py
niworkflows/nipype/utils/docparse.py
niworkflows/nipype/utils/draw_gantt_chart.py
niworkflows/nipype/utils/filemanip.py
niworkflows/nipype/utils/functions.py
niworkflows/nipype/utils/logger.py
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niworkflows/nipype/workflows/__init__.py
niworkflows/nipype/workflows/data/__init__.py
niworkflows/nipype/workflows/dmri/__init__.py
niworkflows/nipype/workflows/dmri/camino/__init__.py
niworkflows/nipype/workflows/dmri/camino/connectivity_mapping.py
niworkflows/nipype/workflows/dmri/camino/diffusion.py
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niworkflows/nipype/workflows/dmri/connectivity/__init__.py
niworkflows/nipype/workflows/dmri/connectivity/group_connectivity.py
niworkflows/nipype/workflows/dmri/connectivity/nx.py
niworkflows/nipype/workflows/dmri/dipy/__init__.py
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niworkflows/nipype/workflows/dmri/dtitk/__init__.py
niworkflows/nipype/workflows/dmri/dtitk/tensor_registration.py
niworkflows/nipype/workflows/dmri/fsl/__init__.py
niworkflows/nipype/workflows/dmri/fsl/artifacts.py
niworkflows/nipype/workflows/dmri/fsl/dti.py
niworkflows/nipype/workflows/dmri/fsl/epi.py
niworkflows/nipype/workflows/dmri/fsl/tbss.py
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niworkflows/nipype/workflows/dmri/mrtrix/connectivity_mapping.py
niworkflows/nipype/workflows/dmri/mrtrix/diffusion.py
niworkflows/nipype/workflows/dmri/mrtrix/group_connectivity.py
niworkflows/nipype/workflows/fmri/__init__.py
niworkflows/nipype/workflows/fmri/fsl/__init__.py
niworkflows/nipype/workflows/fmri/fsl/estimate.py
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niworkflows/nipype/workflows/fmri/spm/__init__.py
niworkflows/nipype/workflows/fmri/spm/estimate.py
niworkflows/nipype/workflows/fmri/spm/preprocess.py
niworkflows/nipype/workflows/graph/__init__.py
niworkflows/nipype/workflows/misc/__init__.py
niworkflows/nipype/workflows/misc/utils.py
niworkflows/nipype/workflows/rsfmri/__init__.py
niworkflows/nipype/workflows/rsfmri/fsl/__init__.py
niworkflows/nipype/workflows/rsfmri/fsl/resting.py
niworkflows/nipype/workflows/smri/__init__.py
niworkflows/nipype/workflows/smri/ants/ANTSBuildTemplate.py
niworkflows/nipype/workflows/smri/ants/__init__.py
niworkflows/nipype/workflows/smri/ants/antsRegistrationBuildTemplate.py
niworkflows/nipype/workflows/smri/freesurfer/__init__.py
niworkflows/nipype/workflows/smri/freesurfer/autorecon1.py
niworkflows/nipype/workflows/smri/freesurfer/autorecon2.py
niworkflows/nipype/workflows/smri/freesurfer/autorecon3.py
niworkflows/nipype/workflows/smri/freesurfer/ba_maps.py
niworkflows/nipype/workflows/smri/freesurfer/bem.py
niworkflows/nipype/workflows/smri/freesurfer/recon.py
niworkflows/nipype/workflows/smri/freesurfer/utils.py
niworkflows/nipype/workflows/smri/niftyreg/__init__.py
niworkflows/nipype/workflows/smri/niftyreg/groupwise.py
niworkflows/nipype/workflows/warp/__init__.py
niworkflows/viz/__init__.py
niworkflows/viz/plots.py
niworkflows/viz/utils.py