{ID}

ScaleHD workflow {PASSFAIL}

Primary allele	I/O summary
Forward mapped reads	{A1_FWMAP}
Forward mapped percentage	{A1_FWMAP_PCNT}
Forward purged reads	{A1_FWMAP_PURGE}
Reverse mapped reads	{A1_RVMAP}
Reverse mapped percentage	{A1_RVMAP_PCNT}
Reverse purged reads	{A1_RVMAP_PURGE}

Secondary allele	I/O summary
Forward mapped reads	{A2_FWMAP}
Forward mapped percentage	{A2_FWMAP_PCNT}
Forward purged reads	{A2_FWMAP_PURGE}
Reverse mapped reads	{A2_RVMAP}
Reverse mapped percentage	{A2_RVMAP_PCNT}
Reverse purged reads	{A2_RVMAP_PURGE}

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#SequenceQualityControl

{SEQ_QC}

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#SequenceAlignment

{SEQ_ALN}

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#AlleleGenotyping

{GTYPE}