bokeh==2.3.3
imageio==2.9.0
numpy==1.21.4
matplotlib>=3.4.2
Cython
pandas==1.3.4
scipy>=1.7.1
seaborn~=0.11.1
h5py>=3.2.1
gefpy>=0.1.1
setuptools>=41.0.0
scikit-learn>=0.24.2
numba~=0.53.1
statsmodels~=0.12.1
leidenalg>=0.8.7
umap-learn==0.5.1
KDEpy>=1.1.0
Jinja2
shapely~=1.7.1
packaging~=20.9
panel==0.12.1
holoviews==1.14.5
param==1.11.1
hvplot==0.7.3
colorcet==2.0.6
spatialpandas==0.4.2
datashader>=0.13.0
anndata~=0.7.6
phenograph==1.5.7
scikit-misc>=0.1.4
requests~=2.26.0
urllib3
typing_extensions~=3.7.4
natsort~=7.1.1
joblib~=1.0.1
patsy~=0.5.1
louvain>=0.7.0
igraph~=0.9.8
arboreto~=0.1.6
squidpy
xarray>=0.20.1
albumentations==0.4.6
glog==0.3.1
slideio==0.5.225
torchvision==0.11.1
tqdm==4.60.0
scikit-learn==1.0.1
pillow==8.4.0
scikit-image==0.18.3
tifffile==2021.11.2
torch==1.10.0
opencv-python>=4.5.4.58
tensorflow==2.7.0

[doc]
sphinx>=3.2

[test]
pytest>=4.4
pytest-nunit

[visualization]
bokeh>=1.4.0
