Tumor_Sample_Barcode	Entrez_Gene_Id	Hugo_Symbol	Center	Sequencer	Mutation_Status	Tumor_Seq_Allele1	Tumor_Seq_Allele2	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	VerificationStatus	Sequencing_Phase	Sequence_Source	Validation_Method	Validation_Status	Score	BAM_File	t_alt_count	t_ref_count	n_alt_count	n_ref_count	Chromosome	Start_Position	End_Position	Reference_Allele	tumorSeqAllele	HGVSp_Short	Variant_Classification	functionImpact	fisValue	linkXVAR	linkPDB	linkMSA	NCBI_Build	Strand	Variant_Type	dbSNP_RS	dbSNP_Val_Status	ExAC_AF	Codons	RefSeq
DS-sig-007-P	27	ABL2	NA	NA	Somatic	C	G	DS-sig-007-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	135	233	0	223	1	179077838	179077838	C	G	R855T	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,1,179077838,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABL2_HUMAN&rb=740&re=939&var=R855T	GRCh37	-1	SNP	NA	NA	0	aGa/aCa	NM_001168237.1,NM_007314.3,NM_001168238.1,NM_001168236.1
DS-sig-043-P	142	PARP1	NA	NA	Somatic	C	G	DS-sig-043-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	18	429	0	242	1	226589923	226589923	C	G	G93A	Missense_Mutation	L	1.475	getma.org/?cm=var&var=hg19,1,226589923,C,G&fts=all	getma.org/pdb.php?prot=PARP1_HUMAN&from=91&to=115&var=G93A	getma.org/?cm=msa&ty=f&p=PARP1_HUMAN&rb=61&re=145&var=G93A	GRCh37	-1	SNP	NA	NA	0	gGa/gCa	NM_001618.3
P-0000083-T01-IM3	207	AKT1	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	88	647	0	178	14	105241296	105241296	G	T	N204K	Missense_Mutation	N	-0.82	getma.org/?cm=var&var=hg19,14,105241296,G,T&fts=all	getma.org/pdb.php?prot=AKT1_HUMAN&from=150&to=408&var=N204K	getma.org/?cm=msa&ty=f&p=AKT1_HUMAN&rb=150&re=408&var=N204K	GRCh37	-1	SNP	NA	NA	0	aaC/aaA	NM_001014432.1
P-0000083-T01-IM3	238	ALK	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	48	355	1	183	2	29474101	29474101	C	G	G692R	Missense_Mutation	M	2.415	getma.org/?cm=var&var=hg19,2,29474101,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ALK_HUMAN&rb=637&re=727&var=G692R	GRCh37	-1	SNP	NA	NA	0	Ggg/Cgg	NM_004304.4
P-0003826-T01-IM5	367	AR	MSKCC	NA	NA	A	A	NORMAL	T	T	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	35	119	0	104	X	66765158	66765158	T	A	L57Q	Missense_Mutation	N	-0.345	getma.org/?cm=var&var=hg19,X,66765158,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ANDR_HUMAN&rb=6&re=75&var=L57Q	GRCh37	1	SNP	NA	NA	0	cTg/cAg	NM_000044.3
P-0003826-T01-IM5	367	AR	.	NA	NA	-	-	NORMAL	TGC	TGC	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	18	177	0	324	X	66765149	66765151	TGC	-	L57del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	tTGCtg/ttg	NM_000044.3
DS-sig-046-P	367	AR	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	93	309	1	463	X	66931264	66931264	G	A	G636S	Missense_Mutation	M	2.975	getma.org/?cm=var&var=hg19,X,66931264,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ANDR_HUMAN&rb=627&re=686&var=G635S	GRCh37	1	SNP	NA	NA	0	Ggt/Agt	NM_000044.3
DS-sig-012-P	369	ARAF	NA	NA	Somatic	A	T	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	62	210	0	212	X	47428284	47428284	A	T	Q415L	Missense_Mutation	L	1.065	getma.org/?cm=var&var=hg19,X,47428284,A,T&fts=all	getma.org/pdb.php?prot=ARAF_HUMAN&from=310&to=567&var=Q415L	getma.org/?cm=msa&ty=f&p=ARAF_HUMAN&rb=310&re=567&var=Q415L	GRCh37	1	SNP	NA	NA	0	cAg/cTg	NM_001654.4,NM_001256196.1
DS-sig-038-P	472	ATM	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	163	1089	1	875	11	108119795	108119795	C	T	Q401*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,11,108119795,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0.00001	Cag/Tag	NM_000051.3
P-0000423-T01-IM3	472	ATM	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	32	560	0	188	11	108203553	108203553	G	A	R2618K	Missense_Mutation	N	0.525	getma.org/?cm=var&var=hg19,11,108203553,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATM_HUMAN&rb=2490&re=2689&var=R2618K	GRCh37	1	SNP	NA	NA	0	aGa/aAa	NM_000051.3
DS-sig-018-P	545	ATR	NA	NA	Somatic	G	A	DS-sig-018-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	132	1274	0	480	3	142172007	142172007	G	A	A2575V	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,3,142172007,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATR_HUMAN&rb=2568&re=2611&var=A2575V	GRCh37	-1	SNP	NA	NA	0.00004	gCg/gTg	NM_001184.3
DS-sig-006-P	545	ATR	NA	NA	Somatic	G	C	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	238	352	0	264	3	142204106	142204106	G	C	P2033A	Missense_Mutation	M	2.35	getma.org/?cm=var&var=hg19,3,142204106,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATR_HUMAN&rb=1771&re=2092&var=P2033A	GRCh37	-1	SNP	NA	NA	0.00001	Cca/Gca	NM_001184.3
DS-sig-038-P	545	ATR	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	96	1048	0	504	3	142241667	142241667	G	A	S1390L	Missense_Mutation	N	0.405	getma.org/?cm=var&var=hg19,3,142241667,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATR_HUMAN&rb=1226&re=1425&var=S1390L	GRCh37	-1	SNP	NA	NA	0	tCa/tTa	NM_001184.3
P-0000083-T01-IM3	545	ATR	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	182	731	0	196	3	142188981	142188981	C	G	R2089P	Missense_Mutation	M	2.765	getma.org/?cm=var&var=hg19,3,142188981,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATR_HUMAN&rb=1771&re=2092&var=R2089P	GRCh37	-1	SNP	NA	NA	0	cGa/cCa	NM_001184.3
P-0000083-T01-IM3	546	ATRX	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	273	387	0	167	X	76874303	76874303	G	C	L1807V	Missense_Mutation	M	2.695	getma.org/?cm=var&var=hg19,X,76874303,G,C&fts=all	getma.org/pdb.php?prot=ATRX_HUMAN&from=1563&to=1889&var=L1807V	getma.org/?cm=msa&ty=f&p=ATRX_HUMAN&rb=1563&re=1889&var=L1807V	GRCh37	-1	SNP	NA	NA	0	Ctc/Gtc	NM_000489.3
P-0002146-T01-IM3	641	BLM	MSK-IMPACT	MSK-IMPACT	NA	A	G	NORMAL	A	A	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	35	516	0	464	15	91306343	91306343	A	G	N677S	Missense_Mutation	M	2.155	getma.org/?cm=var&var=hg19,15,91306343,A,G&fts=all	getma.org/pdb.php?prot=BLM_HUMAN&from=669&to=841&var=N677S	getma.org/?cm=msa&ty=f&p=BLM_HUMAN&rb=669&re=841&var=N677S	GRCh37	1	SNP	NA	NA	0.00001	aAt/aGt	NM_000057.2,NM_001287246.1
DS-sig-042-P	668	FOXL2	NA	NA	Somatic	C	G	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	17	290	0	236	3	138665360	138665360	C	G	E69Q	Missense_Mutation	N	-0.145	getma.org/?cm=var&var=hg19,3,138665360,C,G&fts=all	getma.org/pdb.php?prot=FOXL2_HUMAN&from=54&to=149&var=E69Q	getma.org/?cm=msa&ty=f&p=FOXL2_HUMAN&rb=54&re=149&var=E69Q	GRCh37	-1	SNP	NA	NA	0	Gag/Cag	NM_023067.3
P-0000083-T01-IM3	668	FOXL2	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	32	126	0	52	3	138664489	138664489	G	C	S359C	Missense_Mutation	L	1.585	getma.org/?cm=var&var=hg19,3,138664489,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=FOXL2_HUMAN&rb=161&re=374&var=S359C	GRCh37	-1	SNP	NA	NA	0	tCt/tGt	NM_023067.3
DS-sig-038-P	672	BRCA1	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	110	1029	0	526	17	41243494	41243494	C	T	E1352K	Missense_Mutation	L	1.845	getma.org/?cm=var&var=hg19,17,41243494,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=BRCA1_HUMAN&rb=1179&re=1368&var=E1352K	GRCh37	-1	SNP	NA	NA	0.00005	Gaa/Aaa	NM_007294.3
DS-sig-038-P	672	BRCA1	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	121	1031	0	526	17	41243518	41243518	C	T	D1344N	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,17,41243518,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=BRCA1_HUMAN&rb=1179&re=1368&var=D1344N	GRCh37	-1	SNP	NA	NA	0	Gat/Aat	NM_007294.3
DS-sig-046-P	672	BRCA1	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	172	545	3	720	17	41251812	41251812	G	A	T176M	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,17,41251812,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=BRCA1_HUMAN&rb=65&re=264&var=T176M	GRCh37	-1	SNP	NA	NA	0	aCg/aTg	NM_007294.3
DS-sig-038-P	673	BRAF	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	18	120	0	49	7	140624368	140624368	C	T	E46K	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,7,140624368,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=BRAF_HUMAN&rb=42&re=143&var=E46K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_004333.4
DS-sig-006-P	675	BRCA2	NA	NA	Somatic	G	A	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	54	652	2	327	13	32914127	32914127	G	A	E1879K	Missense_Mutation	N	0.28	getma.org/?cm=var&var=hg19,13,32914127,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=BRCA2_HUMAN&rb=1872&re=1970&var=E1879K	GRCh37	1	SNP	NA	NA	0.0002	Gag/Aag	NA
DS-sig-038-P	701	BUB1B	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	107	976	0	628	15	40494884	40494884	C	T	P575S	Missense_Mutation	L	1.645	getma.org/?cm=var&var=hg19,15,40494884,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=BUB1B_HUMAN&rb=380&re=579&var=P575S	GRCh37	1	SNP	NA	NA	0	Cca/Tca	NM_001211.5
P-0000083-T01-IM3	841	CASP8	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	92	384	0	165	2	202131261	202131261	G	C	D18H	Missense_Mutation	M	2.71	getma.org/?cm=var&var=hg19,2,202131261,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CASP8_HUMAN&rb=3&re=86&var=D18H	GRCh37	1	SNP	NA	NA	0	Gat/Cat	NM_033355.3
P-0000083-T01-IM3	861	RUNX1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	73	213	0	89	21	36206859	36206859	C	G	S191T	Missense_Mutation	N	0.41	getma.org/?cm=var&var=hg19,21,36206859,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=RUNX1_HUMAN&rb=183&re=358&var=S191T	GRCh37	-1	SNP	NA	NA	0	aGc/aCc	NM_001001890.2
P-0000880-T01-IM3	999	CDH1	MSK-IMPACT	MSK-IMPACT	NA	C	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	49	601	0	289	16	68855984	68855984	C	T	R598*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68855984,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_004360.3
P-0002607-T01-IM3	999	CDH1	MSKCC	NA	NA	T	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	154	381	0	370	16	68846065	68846065	C	T	Q346*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68846065,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Caa/Taa	NM_004360.3
P-0003826-T01-IM5	999	CDH1	MSKCC	NA	NA	T	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	380	346	1	306	16	68772218	68772218	C	T	Q23*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68772218,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_004360.3
DS-sig-043-P	999	CDH1	NA	NA	Somatic	G	A	DS-sig-043-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	36	499	0	326	16	68845616	68845616	G	A	D288N	Missense_Mutation	H	4.645	getma.org/?cm=var&var=hg19,16,68845616,G,A&fts=all	getma.org/pdb.php?prot=CADH1_HUMAN&from=267&to=366&var=D288N	getma.org/?cm=msa&ty=f&p=CADH1_HUMAN&rb=267&re=366&var=D288N	GRCh37	1	SNP	NA	NA	0	Gac/Aac	NM_004360.3
DS-sig-012-P	999	CDH1	NA	NA	Somatic	G	T	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	62	226	0	139	16	68857307	68857307	G	T	E648*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68857307,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Gaa/Taa	NM_004360.3
DS-sig-006-P	999	CDH1	NA	NA	Somatic	G	T	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	284	119	0	233	16	68842408	68842408	G	T	V157F	Missense_Mutation	M	2.905	getma.org/?cm=var&var=hg19,16,68842408,G,T&fts=all	getma.org/pdb.php?prot=CADH1_HUMAN&from=155&to=262&var=V157F	getma.org/?cm=msa&ty=f&p=CADH1_HUMAN&rb=155&re=262&var=V157F	GRCh37	1	SNP	NA	NA	0	Gtt/Ttt	NM_004360.3
DS-sig-002-P	999	CDH1	NA	NA	Somatic	G	T	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	74	567	1	421	16	68835581	68835581	G	T	E58*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68835581,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Gaa/Taa	NM_004360.3
DS-sig-046-P	999	CDH1	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	34	26	0	57	16	68771329	68771329	G	A	W4*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68771329,G,A&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	tGg/tAg	NM_004360.3
DS-sig-016-P	999	CDH1	NA	NA	Somatic	G	A	DS-sig-016-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	140	313	1	379	16	68847234	68847234	G	A	E386K	Missense_Mutation	H	4.23	getma.org/?cm=var&var=hg19,16,68847234,G,A&fts=all	getma.org/pdb.php?prot=CADH1_HUMAN&from=380&to=478&var=E386K	getma.org/?cm=msa&ty=f&p=CADH1_HUMAN&rb=380&re=478&var=E386K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_004360.3
DS-sig-003-P	999	CDH1	NA	NA	Somatic	G	C	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	99	345	0	193	16	68842595	68842595	G	C	X178_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0.00001	NA	NM_004360.3
DS-sig-004-P	999	CDH1	NA	NA	Somatic	G	T	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	87	574	1	387	16	68863677	68863677	G	T	E806*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68863677,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Gaa/Taa	NM_004360.3
DS-sig-007-P	999	CDH1	NA	NA	Somatic	C	T	DS-sig-007-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	229	254	0	329	16	68835794	68835794	C	T	Q129*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68835794,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_004360.3
s_DS_sig_054_P	999	CDH1	MSK-IMPACT341	MSK-IMPACT341	SOMATIC	C	T	s_DS_sig_054_N	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	68	603	0	381	16	68835794	68835794	C	T	Q129*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68835794,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_004360.3
DS-sig-010-P2	999	CDH1	NA	NA	NA	T	-	DS-sig-010-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	70	373	0	277	16	68835613	68835613	T	-	S70Pfs*13	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	taT/ta	NM_004360.3
DS-sig-013-P	999	CDH1	NA	NA	Somatic	G	A	DS-sig-013-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	13	242	0	51	16	68849663	68849663	G	A	X522_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_004360.3
DS-sig-016-P	999	CDH1	NA	NA	NA	CTTTTGAGGTCTCT	-	DS-sig-016-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30	277	0	312	16	68849479	68849492	CTTTTGAGGTCTCT	-	F462Hfs*16	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	cCTTTTGAGGTCTCT/c	NM_004360.3
DS-sig-018-P	999	CDH1	NA	NA	NA	C	-	DS-sig-018-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	107	850	0	388	16	68842425	68842425	C	-	C163Afs*52	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	agC/ag	NM_004360.3
DS-sig-020-P	999	CDH1	NA	NA	Somatic	C	T	DS-sig-020-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	194	339	1	396	16	68857394	68857394	C	T	Q677*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68857394,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Caa/Taa	NM_004360.3
DS-sig-024-P	999	CDH1	NA	NA	Somatic	G	T	DS-sig-024-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	74	347	0	251	16	68849663	68849663	G	T	X522_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_004360.3
DS-sig-037-P	999	CDH1	NA	NA	NA	CT	-	DS-sig-037-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	13	530	0	288	16	68846126	68846127	CT	-	T366Rfs*5	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	aCT/a	NM_004360.3
DS-sig-039-P	999	CDH1	NA	NA	Somatic	C	T	DS-sig-039-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	43	418	0	157	16	68857304	68857304	C	T	Q647*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68857304,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Caa/Taa	NM_004360.3
DS-sig-040-P1	999	CDH1	NA	NA	NA	GCTCTCTA	-	DS-sig-040-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	156	288	0	288	16	68849409	68849416	GCTCTCTA	-	X441_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	NA	NM_004360.3
DS-sig-040-P2	999	CDH1	NA	NA	NA	GCTCTCTA	-	DS-sig-040-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	84	414	0	288	16	68849409	68849416	GCTCTCTA	-	X441_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	NA	NM_004360.3
DS-sig-040-P3	999	CDH1	NA	NA	NA	GCTCTCTA	-	DS-sig-040-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	56	526	0	288	16	68849409	68849416	GCTCTCTA	-	X441_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	NA	NM_004360.3
DS-sig-042-P	999	CDH1	NA	NA	Somatic	G	T	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	213	211	0	305	16	68772254	68772254	G	T	E35*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68772254,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Gag/Tag	NM_004360.3
DS-sig-045-P2	999	CDH1	NA	NA	NA	-	T	DS-sig-045-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	181	896	5	419	16	68862099	68862100	-	T	L731Sfs*17	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0	-/T	NM_004360.3
P-0000083-T01-IM3	999	CDH1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	131	504	0	263	16	68842692	68842692	G	C	E210Q	Missense_Mutation	M	2.69	getma.org/?cm=var&var=hg19,16,68842692,G,C&fts=all	getma.org/pdb.php?prot=CADH1_HUMAN&from=159&to=253&var=E210Q	getma.org/?cm=msa&ty=f&p=CADH1_HUMAN&rb=159&re=253&var=E210Q	GRCh37	1	SNP	NA	NA	0	Gaa/Caa	NM_004360.3
P-0000423-T01-IM3	999	CDH1	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	159	202	0	299	16	68844151	68844151	G	T	E247*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68844151,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Gag/Tag	NM_004360.3
P-0002607-T01-IM3	999	CDH1	MSKCC	NA	NA	T	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	158	371	0	243	16	68846080	68846080	C	T	Q351*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,68846080,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Caa/Taa	NM_004360.3
P-0002607-T01-IM3	999	CDH1	MSKCC	NA	NA	G	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	151	321	0	278	16	68846146	68846146	C	G	P373A	Missense_Mutation	H	3.56	getma.org/?cm=var&var=hg19,16,68846146,C,G&fts=all	getma.org/pdb.php?prot=CADH1_HUMAN&from=263&to=375&var=P373A	getma.org/?cm=msa&ty=f&p=CADH1_HUMAN&rb=263&re=375&var=P373A	GRCh37	1	SNP	NA	NA	0	Ccg/Gcg	NM_004360.3
DS-sig-037-P	1009	CDH11	NA	NA	Somatic	G	C	DS-sig-037-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	19	405	0	272	16	64984842	64984842	G	C	I574M	Missense_Mutation	M	2.315	getma.org/?cm=var&var=hg19,16,64984842,G,C&fts=all	getma.org/pdb.php?prot=CAD11_HUMAN&from=487&to=612&var=I574M	getma.org/?cm=msa&ty=f&p=CAD11_HUMAN&rb=487&re=612&var=I574M	GRCh37	-1	SNP	NA	NA	0	atC/atG	NM_001797.2
DS-sig-002-P	1024	CDK8	NA	NA	Somatic	A	G	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	78	948	0	523	13	26959419	26959419	A	G	T196A	Missense_Mutation	M	3.135	getma.org/?cm=var&var=hg19,13,26959419,A,G&fts=all	getma.org/pdb.php?prot=CDK8_HUMAN&from=23&to=335&var=T196A	getma.org/?cm=msa&ty=f&p=CDK8_HUMAN&rb=23&re=335&var=T196A	GRCh37	1	SNP	NA	NA	0	Aca/Gca	NM_001260.1
DS-sig-006-P	1024	CDK8	NA	NA	Somatic	T	G	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	264	446	0	283	13	26927960	26927960	T	G	Y133*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,13,26927960,T,G&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	taT/taG	NM_001260.1
DS-sig-006-P	1024	CDK8	NA	NA	Somatic	C	T	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	161	291	0	147	13	26975759	26975759	C	T	Q423*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,13,26975759,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_001260.1
DS-sig-010-P2	1026	CDKN1A	NA	NA	NA	-	C	DS-sig-010-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	88	522	0	244	6	36652011	36652012	-	C	R46Pfs*2	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	NA	0	gcc/gCcc	NM_000389.4,NM_001220777.1,NM_078467.2
DS-sig-010-P1	1026	CDKN1A	NA	NA	NA	-	C	DS-sig-010-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	85	529	0	244	6	36652011	36652012	-	C	R46Pfs*2	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	NA	0	gcc/gCcc	NM_000389.4,NM_001220777.1,NM_078467.2
DS-sig-008-P	1026	CDKN1A	NA	NA	Somatic	G	A	DS-sig-008-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	295	987	1	468	6	36652024	36652024	G	A	W49*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,36652024,G,A&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	tGg/tAg	NM_000389.4,NM_001220777.1,NM_078467.2
DS-sig-008-P	1026	CDKN1A	NA	NA	NA	TG	-	DS-sig-008-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	151	1044	0	493	6	36651978	36651979	TG	-	C34*	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	TGt/t	NM_000389.4,NM_001220777.1,NM_078467.2
DS-sig-003-P	1026	CDKN1A	NA	NA	NA	G	-	DS-sig-003-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	163	904	0	744	6	36652058	36652058	G	-	G61Vfs*87	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	gaG/ga	NM_000389.4,NM_001220777.1,NM_078467.2
DS-sig-003-P	1026	CDKN1A	NA	NA	NA	-	A	DS-sig-003-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	149	833	0	539	6	36652147	36652148	-	A	G91Rfs*38	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0	gga/ggAa	NM_000389.4,NM_001220777.1,NM_078467.2
P-0003826-T01-IM5	1026	CDKN1A	.	NA	NA	-	-	NORMAL	GGCGAGGCCGGGAT	GGCGAGGCCGGGAT	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	197	428	0	198	6	36652126	36652139	GGCGAGGCCGGGAT	-	R84Vfs*40	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	cGGCGAGGCCGGGAT/c	NM_000389.4,NM_001220777.1,NM_078467.2
DS-sig-004-P	1026	CDKN1A	NA	NA	NA	GGCGAGGCCGGGAT	-	DS-sig-004-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	32	1041	0	664	6	36652126	36652139	GGCGAGGCCGGGAT	-	R84Vfs*40	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	cGGCGAGGCCGGGAT/c	NM_000389.4,NM_001220777.1,NM_078467.2
DS-sig-007-P	1026	CDKN1A	NA	NA	NA	C	-	DS-sig-007-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	269	757	2	1032	6	36652034	36652034	C	-	F53Lfs*95	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	gaC/ga	NM_000389.4,NM_001220777.1,NM_078467.2
P-0002146-T01-IM3	1026	CDKN1A	MSK-IMPACT	MSK-IMPACT	NA	-	C	NORMAL	-	-	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	45	513	0	465	6	36653555	36653556	-	C	F159Lfs*38	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0	atc/atCc	NM_000389.4,NM_001220777.1,NM_078467.2
DS-sig-042-P	1029	CDKN2A	NA	NA	Somatic	C	T	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	115	86	0	117	9	21971003	21971003	C	T	E119K	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_000077.4
DS-sig-042-P	1029	CDKN2A	NA	NA	Somatic	C	T	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	58	31	0	30	9	21971036	21971036	C	T	D108N	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,9,21971036,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CD2A2_HUMAN&rb=96&re=132&var=R122Q	GRCh37	-1	SNP	rs121913381	NA	0	Gat/Aat	NM_000077.4
P-0000083-T01-IM3	1029	CDKN2A	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	71	250	0	133	9	21971054	21971054	C	G	A102P	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,9,21971054,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CD2A2_HUMAN&rb=96&re=132&var=G116A	GRCh37	-1	SNP	NA	NA	0	Gcg/Ccg	NM_000077.4
P-0000083-T01-IM3	1029	CDKN2A	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	56	268	0	141	9	21971060	21971060	C	G	A100P	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,9,21971060,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CD2A2_HUMAN&rb=96&re=132&var=G114A	GRCh37	-1	SNP	NA	NA	0	Gcc/Ccc	NM_000077.4
P-0000083-T01-IM3	1031	CDKN2C	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	105	477	0	186	1	51436062	51436062	G	C	E8Q	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,1,51436062,G,C&fts=all	getma.org/pdb.php?prot=CDN2C_HUMAN&from=1&to=36&var=E8Q	getma.org/?cm=msa&ty=f&p=CDN2C_HUMAN&rb=1&re=36&var=E8Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NA
P-0000423-T01-IM3	1387	CREBBP	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	73	798	0	598	16	3817754	3817754	G	A	Q1073*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,3817754,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_004380.2
DS-sig-039-P	1387	CREBBP	NA	NA	Somatic	G	C	DS-sig-039-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	45	454	0	207	16	3820744	3820744	G	C	P903A	Missense_Mutation	L	1.545	getma.org/?cm=var&var=hg19,16,3820744,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CBP_HUMAN&rb=713&re=1084&var=P903A	GRCh37	-1	SNP	NA	NA	0	Cct/Gct	NM_004380.2
P-0000083-T01-IM3	1436	CSF1R	MSK-IMPACT	MSK-IMPACT	NA	T	A	NORMAL	T	T	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	55	315	0	111	5	149449754	149449754	T	A	H437L	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,5,149449754,T,A&fts=all	getma.org/pdb.php?prot=CSF1R_HUMAN&from=399&to=489&var=H437L	getma.org/?cm=msa&ty=f&p=CSF1R_HUMAN&rb=399&re=489&var=H437L	GRCh37	-1	SNP	NA	NA	0	cAc/cTc	NM_005211.3,NM_001288705.1
P-0000083-T01-IM3	1786	DNMT1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	80	364	0	137	19	10254627	10254627	C	G	K961N	Missense_Mutation	M	2.565	getma.org/?cm=var&var=hg19,19,10254627,C,G&fts=all	getma.org/pdb.php?prot=DNMT1_HUMAN&from=931&to=1100&var=K961N	getma.org/?cm=msa&ty=f&p=DNMT1_HUMAN&rb=931&re=1100&var=K961N	GRCh37	-1	SNP	NA	NA	0	aaG/aaC	NA
DS-sig-042-P	1789	DNMT3B	NA	NA	Somatic	G	A	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	126	432	0	321	20	31380431	31380431	G	A	X308_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_006892.3
DS-sig-002-P	1956	EGFR	NA	NA	Somatic	C	G	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	61	420	0	342	7	55231487	55231487	C	G	Q565E	Missense_Mutation	M	2.215	getma.org/?cm=var&var=hg19,7,55231487,C,G&fts=all	getma.org/pdb.php?prot=EGFR_HUMAN&from=482&to=681&var=Q565E	getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=482&re=681&var=Q565E	GRCh37	1	SNP	NA	NA	0	Cag/Gag	NM_005228.3
DS-sig-002-P	1956	EGFR	NA	NA	Somatic	G	C	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	45	775	1	496	7	55268047	55268047	G	C	E963Q	Missense_Mutation	L	1.23	getma.org/?cm=var&var=hg19,7,55268047,G,C&fts=all	getma.org/pdb.php?prot=EGFR_HUMAN&from=712&to=968&var=E963Q	getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=712&re=968&var=E963Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NM_005228.3
DS-sig-042-P	1956	EGFR	NA	NA	Somatic	C	G	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	217	600	0	321	7	55224457	55224457	C	G	S380C	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,7,55224457,C,G&fts=all	getma.org/pdb.php?prot=EGFR_HUMAN&from=361&to=481&var=S380C	getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=361&re=481&var=S380C	GRCh37	1	SNP	NA	NA	0	tCc/tGc	NM_005228.3
DS-sig-010-P2	1969	EPHA2	NA	NA	Somatic	C	T	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	39	224	2	149	1	16458218	16458218	C	T	E825K	Missense_Mutation	L	1.365	getma.org/?cm=var&var=hg19,1,16458218,C,T&fts=all	getma.org/pdb.php?prot=EPHA2_HUMAN&from=613&to=871&var=E825K	getma.org/?cm=msa&ty=f&p=EPHA2_HUMAN&rb=613&re=871&var=E825K	GRCh37	-1	SNP	NA	NA	0.00003	Gag/Aag	NM_004431.3
DS-sig-010-P2	2033	EP300	NA	NA	Somatic	G	C	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	28	411	0	265	22	41564487	41564487	G	C	E1303D	Missense_Mutation	M	3.36	getma.org/?cm=var&var=hg19,22,41564487,G,C&fts=all	getma.org/pdb.php?prot=EP300_HUMAN&from=1197&to=1305&var=E1303D	getma.org/?cm=msa&ty=f&p=EP300_HUMAN&rb=1197&re=1305&var=E1303D	GRCh37	1	SNP	NA	NA	0	gaG/gaC	NM_001429.3
DS-sig-016-P	2033	EP300	NA	NA	Somatic	C	T	DS-sig-016-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	188	456	0	605	22	41546068	41546068	C	T	Q895*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,22,41546068,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Caa/Taa	NM_001429.3
P-0000083-T01-IM3	2033	EP300	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	115	455	0	216	22	41531911	41531911	G	C	X541_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_001429.3
DS-sig-006-P	2042	EPHA3	NA	NA	NA	ATGTTTCCAGACACGGTACCC	-	DS-sig-006-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	22	280	0	266	3	89259487	89259507	ATGTTTCCAGACACGGTACCC	-	F212_M218del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	ATGTTTCCAGACACGGTACCC/-	NM_005233.5
P-0000083-T01-IM3	2042	EPHA3	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	84	392	0	110	3	89259131	89259131	C	G	A92G	Missense_Mutation	L	0.83	getma.org/?cm=var&var=hg19,3,89259131,C,G&fts=all	getma.org/pdb.php?prot=EPHA3_HUMAN&from=29&to=202&var=A92G	getma.org/?cm=msa&ty=f&p=EPHA3_HUMAN&rb=29&re=202&var=A92G	GRCh37	1	SNP	NA	NA	0	gCt/gGt	NM_005233.5
DS-sig-038-P	2044	EPHA5	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	70	478	0	288	4	66356106	66356106	G	A	T464I	Missense_Mutation	M	2.625	getma.org/?cm=var&var=hg19,4,66356106,G,A&fts=all	getma.org/pdb.php?prot=EPHA5_HUMAN&from=454&to=469&var=T464I	getma.org/?cm=msa&ty=f&p=EPHA5_HUMAN&rb=424&re=499&var=T464I	GRCh37	-1	SNP	NA	NA	0	aCa/aTa	NM_004439.5,NM_001281765.1
DS-sig-003-P	2047	EPHB1	NA	NA	Somatic	C	T	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	53	493	0	191	3	134968320	134968320	C	T	Q945*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,3,134968320,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_004441.4
DS-sig-010-P2	2047	EPHB1	NA	NA	Somatic	G	C	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	14	232	0	191	3	134885803	134885803	G	C	E572Q	Missense_Mutation	L	1.35	getma.org/?cm=var&var=hg19,3,134885803,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=EPHB1_HUMAN&rb=519&re=618&var=E572Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NM_004441.4
DS-sig-012-P	2047	EPHB1	NA	NA	Somatic	G	A	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	34	231	1	157	3	134960089	134960089	G	A	E816K	Missense_Mutation	H	4.49	getma.org/?cm=var&var=hg19,3,134960089,G,A&fts=all	getma.org/pdb.php?prot=EPHB1_HUMAN&from=619&to=878&var=E816K	getma.org/?cm=msa&ty=f&p=EPHB1_HUMAN&rb=619&re=878&var=E816K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_004441.4
P-0000083-T01-IM3	2047	EPHB1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	87	373	0	192	3	134920315	134920315	G	C	X711_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_004441.4
DS-sig-016-P	2051	EPHB6	NA	NA	Somatic	C	T	DS-sig-016-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	210	324	4	424	7	142563804	142563804	C	T	R398*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,7,142563804,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_004445.4,NM_001280794.1
DS-sig-012-P	2051	EPHB6	NA	NA	NA	-	CCTCCTCCT	DS-sig-012-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	16	183	1	171	7	142562051	142562052	-	CCTCCTCCT	S174_S176dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0.0007	ccc/cCCTCCTCCTcc	NM_004445.4,NM_001280794.1
DS-sig-038-P	2051	EPHB6	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	100	668	0	224	7	142566364	142566364	G	A	G718D	Missense_Mutation	N	-0.515	getma.org/?cm=var&var=hg19,7,142566364,G,A&fts=all	getma.org/pdb.php?prot=EPHB6_HUMAN&from=670&to=915&var=G718D	getma.org/?cm=msa&ty=f&p=EPHB6_HUMAN&rb=670&re=915&var=G718D	GRCh37	1	SNP	NA	NA	0	gGc/gAc	NM_004445.4,NM_001280794.1
DS-sig-039-P	2064	ERBB2	NA	NA	Somatic	C	T	DS-sig-039-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	184	426	0	199	17	37868208	37868208	C	T	S310F	Missense_Mutation	M	2.15	getma.org/?cm=var&var=hg19,17,37868208,C,T&fts=all	getma.org/pdb.php?prot=ERBB2_HUMAN&from=183&to=343&var=S310F	getma.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=183&re=343&var=S310F	GRCh37	1	SNP	NA	NA	0	tCc/tTc	NA
DS-sig-010-P2	2064	ERBB2	NA	NA	Somatic	G	T	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	13	241	0	384	17	37880261	37880261	G	T	D769Y	Missense_Mutation	L	1.305	getma.org/?cm=var&var=hg19,17,37880261,G,T&fts=all	getma.org/pdb.php?prot=ERBB2_HUMAN&from=720&to=976&var=D769Y	getma.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=720&re=976&var=D769Y	GRCh37	1	SNP	NA	NA	0	Gac/Tac	NA
DS-sig-002-P	2064	ERBB2	NA	NA	Somatic	C	G	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	39	303	0	306	17	37879583	37879583	C	G	S653C	Missense_Mutation	M	2.125	getma.org/?cm=var&var=hg19,17,37879583,C,G&fts=all	getma.org/pdb.php?prot=ERBB2_HUMAN&from=487&to=686&var=S653C	getma.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=487&re=686&var=S653C	GRCh37	1	SNP	NA	NA	0	tCc/tGc	NA
DS-sig-046-P	2064	ERBB2	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	133	370	0	478	17	37880997	37880997	G	A	G776S	Missense_Mutation	N	-0.275	getma.org/?cm=var&var=hg19,17,37880997,G,A&fts=all	getma.org/pdb.php?prot=ERBB2_HUMAN&from=720&to=976&var=G776S	getma.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=720&re=976&var=G776S	GRCh37	1	SNP	NA	NA	0	Ggt/Agt	NA
DS-sig-040-P3	2064	ERBB2	NA	NA	Somatic	G	T	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	51	383	0	205	17	37879794	37879794	G	T	V697L	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,17,37879794,G,T&fts=all	getma.org/pdb.php?prot=ERBB2_HUMAN&from=687&to=719&var=V697L	getma.org/?cm=msa&ty=f&p=ERBB2_HUMAN&rb=687&re=719&var=V697L	GRCh37	1	SNP	NA	NA	0	Gtg/Ttg	NA
DS-sig-006-P	2065	ERBB3	NA	NA	Somatic	A	C	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	294	411	1	3149	12	56477587	56477587	A	C	Q45H	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,12,56477587,A,C&fts=all	getma.org/pdb.php?prot=ERBB3_HUMAN&from=1&to=54&var=Q45H	getma.org/?cm=msa&ty=f&p=ERBB3_HUMAN&rb=1&re=54&var=Q45H	GRCh37	1	SNP	NA	NA	0	caA/caC	NM_001982.3
DS-sig-029-P	2065	ERBB3	NA	NA	Somatic	C	G	DS-sig-029-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	125	1031	0	562	12	56486788	56486788	C	G	S401C	Missense_Mutation	M	2.725	getma.org/?cm=var&var=hg19,12,56486788,C,G&fts=all	getma.org/pdb.php?prot=ERBB3_HUMAN&from=353&to=474&var=S401C	getma.org/?cm=msa&ty=f&p=ERBB3_HUMAN&rb=353&re=474&var=S401C	GRCh37	1	SNP	NA	NA	0	tCc/tGc	NM_001982.3
DS-sig-037-P	2065	ERBB3	NA	NA	Somatic	C	T	DS-sig-037-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	24	575	1	363	12	56481850	56481850	C	T	P260S	Missense_Mutation	M	3.265	getma.org/?cm=var&var=hg19,12,56481850,C,T&fts=all	getma.org/pdb.php?prot=ERBB3_HUMAN&from=169&to=332&var=P260S	getma.org/?cm=msa&ty=f&p=ERBB3_HUMAN&rb=169&re=332&var=P260S	GRCh37	1	SNP	NA	NA	0	Cca/Tca	NM_001982.3
P-0000083-T01-IM3	2065	ERBB3	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	107	570	0	234	12	56495048	56495048	G	C	Q1135H	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,12,56495048,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ERBB3_HUMAN&rb=1015&re=1340&var=Q1135H	GRCh37	1	SNP	NA	NA	0	caG/caC	NM_001982.3
P-0000083-T01-IM3	2065	ERBB3	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	110	302	0	131	12	56495656	56495656	C	G	C1282W	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,12,56495656,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ERBB3_HUMAN&rb=1015&re=1340&var=C1282W	GRCh37	1	SNP	NA	NA	0	tgC/tgG	NM_001982.3
s_DS_sig_054_P	2065	ERBB3	MSK-IMPACT341	MSK-IMPACT341	SOMATIC	G	A	s_DS_sig_054_N	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	73	717	0	389	12	56489568	56489568	G	A	R678K	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,12,56489568,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ERBB3_HUMAN&rb=675&re=708&var=R678K	GRCh37	1	SNP	NA	NA	0	aGg/aAg	NM_001982.3
DS-sig-012-P	2066	ERBB4	NA	NA	Somatic	G	A	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	45	324	0	218	2	212251602	212251602	G	A	P1153S	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,2,212251602,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ERBB4_HUMAN&rb=1062&re=1306&var=P1153S	GRCh37	-1	SNP	NA	NA	0	Cct/Tct	NM_005235.2
DS-sig-046-P	2068	ERCC2	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	55	450	0	475	19	45872380	45872380	G	A	S44L	Missense_Mutation	H	3.605	getma.org/?cm=var&var=hg19,19,45872380,G,A&fts=all	getma.org/pdb.php?prot=ERCC2_HUMAN&from=7&to=283&var=S44L	getma.org/?cm=msa&ty=f&p=ERCC2_HUMAN&rb=7&re=283&var=S44L	GRCh37	-1	SNP	NA	NA	0	tCa/tTa	NM_000400.3
DS-sig-038-P	2068	ERCC2	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	185	756	0	278	19	45856356	45856356	C	T	E606K	Missense_Mutation	H	4.755	getma.org/?cm=var&var=hg19,19,45856356,C,T&fts=all	getma.org/pdb.php?prot=ERCC2_HUMAN&from=524&to=700&var=E606K	getma.org/?cm=msa&ty=f&p=ERCC2_HUMAN&rb=524&re=700&var=E606K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_000400.3
DS-sig-006-P	2068	ERCC2	NA	NA	Somatic	G	A	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	150	202	0	142	19	45867571	45867571	G	A	S246F	Missense_Mutation	H	3.69	getma.org/?cm=var&var=hg19,19,45867571,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ERCC2_HUMAN&rb=72&re=256&var=S246F	GRCh37	-1	SNP	NA	NA	0	tCc/tTc	NM_000400.3
DS-sig-042-P	2068	ERCC2	NA	NA	Somatic	G	C	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	79	266	0	177	19	45868168	45868168	G	C	I174M	Missense_Mutation	M	2.24	getma.org/?cm=var&var=hg19,19,45868168,G,C&fts=all	getma.org/pdb.php?prot=ERCC2_HUMAN&from=72&to=256&var=I174M	getma.org/?cm=msa&ty=f&p=ERCC2_HUMAN&rb=72&re=256&var=I174M	GRCh37	-1	SNP	NA	NA	0	atC/atG	NM_000400.3
P-0000083-T01-IM3	2068	ERCC2	MSK-IMPACT	MSK-IMPACT	NA	CC	AT	NORMAL	CC	CC	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	94	333	0	167	19	45858091	45858092	CC	AT	G521M	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DNP	NA	NA	0	GGg/ATg	NM_000400.3
DS-sig-003-P	2073	ERCC5	NA	NA	Somatic	G	C	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	34	605	0	431	13	103506708	103506708	G	C	E151Q	Missense_Mutation	L	1.06	getma.org/?cm=var&var=hg19,13,103506708,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ERCC5_HUMAN&rb=99&re=252&var=E151Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NM_000123.3
DS-sig-038-P	2115	ETV1	NA	NA	Somatic	C	G	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	144	1624	1	878	7	14026266	14026266	C	G	E60Q	Missense_Mutation	M	2.305	getma.org/?cm=var&var=hg19,7,14026266,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ETV1_HUMAN&rb=1&re=333&var=E60Q	GRCh37	-1	SNP	NA	NA	0	Gaa/Caa	NA
P-0000083-T01-IM3	2120	ETV6	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	108	433	0	201	12	12043921	12043921	C	G	L434V	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,12,12043921,C,G&fts=all	getma.org/pdb.php?prot=ETV6_HUMAN&from=423&to=452&var=L434V	getma.org/?cm=msa&ty=f&p=ETV6_HUMAN&rb=423&re=452&var=L434V	GRCh37	1	SNP	NA	NA	0	Ctg/Gtg	NM_001987.4
DS-sig-040-P3	2146	EZH2	NA	NA	Somatic	G	C	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	74	855	0	502	7	148506467	148506467	G	C	A677G	Missense_Mutation	M	2.315	getma.org/?cm=var&var=hg19,7,148506467,G,C&fts=all	getma.org/pdb.php?prot=EZH2_HUMAN&from=623&to=727&var=A677G	getma.org/?cm=msa&ty=f&p=EZH2_HUMAN&rb=623&re=727&var=A677G	GRCh37	-1	SNP	NA	NA	0	gCa/gGa	NA
DS-sig-002-P	2146	EZH2	NA	NA	Somatic	G	A	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	90	595	0	385	7	148508733	148508733	G	A	S639L	Missense_Mutation	N	0.565	getma.org/?cm=var&var=hg19,7,148508733,G,A&fts=all	getma.org/pdb.php?prot=EZH2_HUMAN&from=623&to=727&var=S639L	getma.org/?cm=msa&ty=f&p=EZH2_HUMAN&rb=623&re=727&var=S639L	GRCh37	-1	SNP	NA	NA	0	tCa/tTa	NA
DS-sig-002-P	2195	FAT1	NA	NA	Somatic	G	A	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	70	608	2	238	4	187629169	187629169	G	A	Q605*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,187629169,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_005245.3
DS-sig-042-P	2195	FAT1	NA	NA	Somatic	C	T	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	242	480	0	445	4	187542708	187542708	C	T	E1678K	Missense_Mutation	H	4.435	getma.org/?cm=var&var=hg19,4,187542708,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=1672&re=1756&var=E1678K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_005245.3
DS-sig-042-P	2195	FAT1	NA	NA	Somatic	C	G	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	212	464	0	440	4	187542729	187542729	C	G	E1671Q	Missense_Mutation	M	2.015	getma.org/?cm=var&var=hg19,4,187542729,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=1668&re=1765&var=E1671Q	GRCh37	-1	SNP	NA	NA	0	Gaa/Caa	NM_005245.3
P-0000083-T01-IM3	2195	FAT1	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	90	702	0	234	4	187532732	187532732	G	A	L3221F	Missense_Mutation	M	3.125	getma.org/?cm=var&var=hg19,4,187532732,G,A&fts=all	getma.org/pdb.php?prot=FAT1_HUMAN&from=3130&to=3221&var=L3221F	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=3130&re=3221&var=L3221F	GRCh37	-1	SNP	NA	NA	0	Ctt/Ttt	NM_005245.3
P-0000083-T01-IM3	2195	FAT1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	112	562	0	223	4	187541934	187541934	G	C	L1936V	Missense_Mutation	N	0.575	getma.org/?cm=var&var=hg19,4,187541934,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=1891&re=1970&var=L1936V	GRCh37	-1	SNP	NA	NA	0	Ctc/Gtc	NM_005245.3
P-0000083-T01-IM3	2195	FAT1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	106	510	0	188	4	187584540	187584540	C	G	D1165H	Missense_Mutation	H	4.7	getma.org/?cm=var&var=hg19,4,187584540,C,G&fts=all	getma.org/pdb.php?prot=FAT1_HUMAN&from=1144&to=1236&var=D1165H	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=1144&re=1236&var=D1165H	GRCh37	-1	SNP	NA	NA	0	Gat/Cat	NM_005245.3
P-0000083-T01-IM3	2261	FGFR3	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	111	425	0	163	4	1805418	1805418	G	A	X311_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NA
P-0000083-T01-IM3	2263	FGFR2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	119	587	0	240	10	123243247	123243247	C	G	D756H	Missense_Mutation	N	0.535	getma.org/?cm=var&var=hg19,10,123243247,C,G&fts=all	getma.org/pdb.php?prot=FGFR2_HUMAN&from=481&to=757&var=D756H	getma.org/?cm=msa&ty=f&p=FGFR2_HUMAN&rb=481&re=757&var=D756H	GRCh37	-1	SNP	NA	NA	0	Gac/Cac	NM_000141.4
P-0000083-T01-IM3	2263	FGFR2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	148	572	0	263	10	123279549	123279549	C	G	E295Q	Missense_Mutation	L	0.94	getma.org/?cm=var&var=hg19,10,123279549,C,G&fts=all	getma.org/pdb.php?prot=FGFR2_HUMAN&from=260&to=359&var=E295Q	getma.org/?cm=msa&ty=f&p=FGFR2_HUMAN&rb=260&re=359&var=E295Q	GRCh37	-1	SNP	NA	NA	0	Gaa/Caa	NM_000141.4
P-0000083-T01-IM3	2324	FLT4	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	86	365	0	173	5	180043980	180043980	G	C	L1006V	Missense_Mutation	N	0.625	getma.org/?cm=var&var=hg19,5,180043980,G,C&fts=all	getma.org/pdb.php?prot=VGFR3_HUMAN&from=845&to=1169&var=L1006V	getma.org/?cm=msa&ty=f&p=VGFR3_HUMAN&rb=845&re=1169&var=L1006V	GRCh37	-1	SNP	NA	NA	0	Ctg/Gtg	NM_182925.4
DS-sig-043-P	2475	MTOR	NA	NA	Somatic	G	A	DS-sig-043-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	29	550	0	416	1	11184573	11184573	G	A	S2215F	Missense_Mutation	M	2.14	getma.org/?cm=var&var=hg19,1,11184573,G,A&fts=all	getma.org/pdb.php?prot=MTOR_HUMAN&from=2181&to=2431&var=S2215F	getma.org/?cm=msa&ty=f&p=MTOR_HUMAN&rb=2181&re=2431&var=S2215F	GRCh37	-1	SNP	NA	NA	0	tCt/tTt	NM_004958.3
DS-sig-029-P	2475	MTOR	NA	NA	Somatic	C	G	DS-sig-029-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	21	785	0	415	1	11294275	11294275	C	G	Q752H	Missense_Mutation	M	2.38	getma.org/?cm=var&var=hg19,1,11294275,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTOR_HUMAN&rb=601&re=800&var=Q752H	GRCh37	-1	SNP	NA	NA	0	caG/caC	NM_004958.3
P-0000083-T01-IM3	2475	MTOR	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	89	396	0	155	1	11199714	11199714	C	G	G1625A	Missense_Mutation	M	3.365	getma.org/?cm=var&var=hg19,1,11199714,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTOR_HUMAN&rb=1513&re=1908&var=G1625A	GRCh37	-1	SNP	NA	NA	0	gGc/gCc	NM_004958.3
P-0000083-T01-IM3	2475	MTOR	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	134	643	0	267	1	11205033	11205033	C	G	A1586P	Missense_Mutation	H	3.75	getma.org/?cm=var&var=hg19,1,11205033,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTOR_HUMAN&rb=1513&re=1908&var=A1586P	GRCh37	-1	SNP	NA	NA	0	Gca/Cca	NM_004958.3
P-0000083-T01-IM3	2475	MTOR	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	89	417	0	206	1	11294278	11294278	C	G	E751D	Missense_Mutation	M	3.235	getma.org/?cm=var&var=hg19,1,11294278,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTOR_HUMAN&rb=601&re=800&var=E751D	GRCh37	-1	SNP	NA	NA	0	gaG/gaC	NM_004958.3
DS-sig-002-P	2735	GLI1	NA	NA	Somatic	C	G	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	32	375	0	464	12	57864883	57864883	C	G	S787C	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,12,57864883,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=GLI1_HUMAN&rb=399&re=851&var=S787C	GRCh37	1	SNP	NA	NA	0	tCt/tGt	NM_005269.2
DS-sig-013-P	2737	GLI3	NA	NA	Somatic	C	T	DS-sig-013-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	11	146	0	52	7	42007500	42007500	C	T	G709S	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,7,42007500,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=GLI3_HUMAN&rb=681&re=1089&var=G709S	GRCh37	-1	SNP	NA	NA	0	Ggt/Agt	NM_000168.5
DS-sig-008-P	2778	GNAS	NA	NA	Somatic	G	A	DS-sig-008-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	58	613	0	350	20	57485091	57485091	G	A	E309K	Missense_Mutation	L	1.625	getma.org/?cm=var&var=hg19,20,57485091,G,A&fts=all	getma.org/pdb.php?prot=GNAS2_HUMAN&from=1&to=394&var=E309K	getma.org/?cm=msa&ty=f&p=GNAS2_HUMAN&rb=1&re=394&var=E309K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_000516.4
DS-sig-040-P3	2778	GNAS	NA	NA	Somatic	C	T	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	35	307	0	156	20	57429948	57429948	C	T	P543L	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,20,57429948,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=GNAS1_HUMAN&rb=401&re=600&var=P543L	GRCh37	1	SNP	NA	NA	0	cCg/cTg	NM_001077490.1,NM_080425.2
P-0000083-T01-IM3	2903	GRIN2A	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	53	318	0	148	16	9857609	9857609	C	G	E1264D	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,16,9857609,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NMDE1_HUMAN&rb=839&re=1464&var=E1264D	GRCh37	-1	SNP	NA	NA	0	gaG/gaC	NM_001134407.1
P-0000423-T01-IM3	2956	MSH6	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	128	438	0	232	2	48023086	48023086	G	A	E171K	Missense_Mutation	L	1.43	getma.org/?cm=var&var=hg19,2,48023086,G,A&fts=all	getma.org/pdb.php?prot=MSH6_HUMAN&from=164&to=363&var=E171K	getma.org/?cm=msa&ty=f&p=MSH6_HUMAN&rb=164&re=363&var=E171K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_000179.2
P-0000083-T01-IM3	3006	HIST1H1C	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	97	356	0	120	6	26056417	26056417	G	C	I80M	Missense_Mutation	M	2.515	getma.org/?cm=var&var=hg19,6,26056417,G,C&fts=all	getma.org/pdb.php?prot=H12_HUMAN&from=36&to=109&var=I80M	getma.org/?cm=msa&ty=f&p=H12_HUMAN&rb=36&re=109&var=I80M	GRCh37	-1	SNP	NA	NA	0.00003	atC/atG	NM_005319.3
DS-sig-046-P	3091	HIF1A	NA	NA	NA	C	-	DS-sig-046-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	186	574	0	803	14	62207619	62207619	C	-	Q603Sfs*22	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	ttC/tt	NM_001530.3
P-0000083-T01-IM3	3480	IGF1R	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	72	485	0	203	15	99467866	99467866	G	T	G912V	Missense_Mutation	H	3.73	getma.org/?cm=var&var=hg19,15,99467866,G,T&fts=all	getma.org/pdb.php?prot=IGF1R_HUMAN&from=833&to=917&var=G912V	getma.org/?cm=msa&ty=f&p=IGF1R_HUMAN&rb=833&re=917&var=G912V	GRCh37	1	SNP	NA	NA	0	gGg/gTg	NM_000875.3
DS-sig-038-P	3575	IL7R	NA	NA	Somatic	G	C	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	132	1272	0	645	5	35875653	35875653	G	C	K280N	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,5,35875653,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=IL7RA_HUMAN&rb=247&re=323&var=K280N	GRCh37	1	SNP	NA	NA	0	aaG/aaC	NM_002185.3
P-0000083-T01-IM3	3631	INPP4A	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	54	380	0	154	2	99172167	99172167	G	C	S578T	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,2,99172167,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=INP4A_HUMAN&rb=1&re=609&var=S578T	GRCh37	1	SNP	NA	NA	0	aGc/aCc	NM_001134224.1,NM_004027.2
DS-sig-006-P	3667	IRS1	NA	NA	Somatic	C	T	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	161	149	0	142	2	227661793	227661793	C	T	M554I	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,2,227661793,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=IRS1_HUMAN&rb=463&re=662&var=M554I	GRCh37	-1	SNP	NA	NA	0	atG/atA	NM_005544.2
DS-sig-004-P	3716	JAK1	NA	NA	Somatic	C	T	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	61	957	1	734	1	65344790	65344790	C	T	E83K	Missense_Mutation	M	2.565	getma.org/?cm=var&var=hg19,1,65344790,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=JAK1_HUMAN&rb=34&re=420&var=E83K	GRCh37	-1	SNP	NA	NA	0.00001	Gag/Aag	NM_002227.2
DS-sig-029-P	3717	JAK2	NA	NA	Somatic	G	C	DS-sig-029-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	74	1000	0	660	9	5081790	5081790	G	C	G834R	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,9,5081790,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=JAK2_HUMAN&rb=806&re=848&var=G834R	GRCh37	1	SNP	NA	NA	0	Ggt/Cgt	NM_004972.3
P-0000083-T01-IM3	3718	JAK3	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	79	416	0	197	19	17945387	17945387	G	C	I781M	Missense_Mutation	M	2.2	getma.org/?cm=var&var=hg19,19,17945387,G,C&fts=all	getma.org/pdb.php?prot=JAK3_HUMAN&from=521&to=781&var=I781M	getma.org/?cm=msa&ty=f&p=JAK3_HUMAN&rb=521&re=781&var=I781M	GRCh37	-1	SNP	NA	NA	0	atC/atG	NM_000215.3
P-0000083-T01-IM3	3718	JAK3	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	89	248	0	109	19	17953175	17953175	G	C	L271V	Missense_Mutation	N	-0.23	getma.org/?cm=var&var=hg19,19,17953175,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=JAK3_HUMAN&rb=24&re=356&var=L271V	GRCh37	-1	SNP	NA	NA	0	Ctc/Gtc	NM_000215.3
DS-sig-038-P	3762	KCNJ5	NA	NA	Somatic	G	C	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	44	339	0	131	11	128782030	128782030	G	C	E288Q	Missense_Mutation	M	2.255	getma.org/?cm=var&var=hg19,11,128782030,G,C&fts=all	getma.org/pdb.php?prot=IRK5_HUMAN&from=54&to=385&var=E288Q	getma.org/?cm=msa&ty=f&p=IRK5_HUMAN&rb=54&re=385&var=E288Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NA
P-0000083-T01-IM3	3791	KDR	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	99	543	0	214	4	55972024	55972024	C	G	E540D	Missense_Mutation	M	2	getma.org/?cm=var&var=hg19,4,55972024,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=VGFR2_HUMAN&rb=424&re=547&var=E540D	GRCh37	-1	SNP	NA	NA	0	gaG/gaC	NM_002253.2
P-0000083-T01-IM3	3815	KIT	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	117	552	0	203	4	55593383	55593383	G	C	X514_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_000222.2,NM_001093772.1
P-0000083-T01-IM3	3815	KIT	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	78	400	0	159	4	55594176	55594176	G	C	X627_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_000222.2,NM_001093772.1
P-0000083-T01-IM3	3815	KIT	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	54	332	0	141	4	55604709	55604709	C	G	H973D	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,4,55604709,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=KIT_HUMAN&rb=925&re=976&var=H973D	GRCh37	1	SNP	NA	NA	0	Cac/Gac	NM_000222.2,NM_001093772.1
P-0000083-T01-IM3	3845	KRAS	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	169	636	0	426	12	25398284	25398284	C	G	G12A	Missense_Mutation	M	2.27	getma.org/?cm=var&var=hg19,12,25398284,C,G&fts=all	getma.org/pdb.php?prot=RASK_HUMAN&from=5&to=165&var=G12A	getma.org/?cm=msa&ty=f&p=RASK_HUMAN&rb=5&re=165&var=G12A	GRCh37	-1	SNP	rs121913529	NA	0	gGt/gCt	NM_033360.2
DS-sig-040-P1	4087	SMAD2	NA	NA	Somatic	C	A	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	270	778	0	509	18	45396892	45396892	C	A	D94Y	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,18,45396892,C,A&fts=all	getma.org/pdb.php?prot=SMAD2_HUMAN&from=41&to=171&var=D94Y	getma.org/?cm=msa&ty=f&p=SMAD2_HUMAN&rb=41&re=171&var=D94Y	GRCh37	-1	SNP	NA	NA	0	Gat/Tat	NM_005901.5
P-0000083-T01-IM3	4088	SMAD3	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	60	395	0	149	15	67358538	67358538	C	G	L16V	Missense_Mutation	M	2.635	getma.org/?cm=var&var=hg19,15,67358538,C,G&fts=all	getma.org/pdb.php?prot=SMAD3_HUMAN&from=10&to=136&var=L16V	getma.org/?cm=msa&ty=f&p=SMAD3_HUMAN&rb=10&re=136&var=L16V	GRCh37	1	SNP	NA	NA	0	Ctg/Gtg	NM_005902.3
DS-sig-038-P	4170	MCL1	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	55	556	3	368	1	150551640	150551640	C	T	E123K	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,1,150551640,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MCL1_HUMAN&rb=1&re=200&var=E123K	GRCh37	-1	SNP	NA	NA	0.00001	Gaa/Aaa	NM_021960.4,NM_001197320.1
DS-sig-038-P	4170	MCL1	NA	NA	Somatic	C	G	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	97	1003	0	707	1	150551574	150551574	C	G	E145Q	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,1,150551574,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MCL1_HUMAN&rb=1&re=200&var=E145Q	GRCh37	-1	SNP	NA	NA	0	Gag/Cag	NM_021960.4,NM_001197320.1
DS-sig-042-P	4170	MCL1	NA	NA	NA	GCCGGCCCCCAA	-	DS-sig-042-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	30	177	0	86	1	150551935	150551946	GCCGGCCCCCAA	-	L21_G24del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.00009	TTGGGGGCCGGC/-	NM_021960.4,NM_001197320.1
DS-sig-040-P1	4214	MAP3K1	NA	NA	Somatic	G	A	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	251	768	0	561	5	56178218	56178218	G	A	R1064K	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,5,56178218,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=M3K1_HUMAN&rb=464&re=1242&var=R1064K	GRCh37	1	SNP	NA	NA	0.00003	aGa/aAa	NM_005921.1
DS-sig-004-P	4233	MET	NA	NA	Somatic	G	T	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	120	1279	0	591	7	116411619	116411619	G	T	G933V	Missense_Mutation	M	2.34	getma.org/?cm=var&var=hg19,7,116411619,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MET_HUMAN&rb=830&re=972&var=G933V	GRCh37	1	SNP	NA	NA	0	gGa/gTa	NM_000245.2,NM_001127500.1
DS-sig-006-P	4233	MET	NA	NA	Somatic	G	C	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	179	452	0	179	7	116380997	116380997	G	C	W540S	Missense_Mutation	M	2.67	getma.org/?cm=var&var=hg19,7,116380997,G,C&fts=all	getma.org/pdb.php?prot=MET_HUMAN&from=519&to=562&var=W540S	getma.org/?cm=msa&ty=f&p=MET_HUMAN&rb=519&re=562&var=W540S	GRCh37	1	SNP	NA	NA	0	tGg/tCg	NM_000245.2,NM_001127500.1
DS-sig-038-P	4292	MLH1	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	79	863	0	402	3	37090498	37090498	C	T	S698L	Missense_Mutation	L	1.425	getma.org/?cm=var&var=hg19,3,37090498,C,T&fts=all	getma.org/pdb.php?prot=MLH1_HUMAN&from=401&to=754&var=S698L	getma.org/?cm=msa&ty=f&p=MLH1_HUMAN&rb=401&re=754&var=S698L	GRCh37	1	SNP	NA	NA	0	tCa/tTa	NM_000249.3,NM_001258273.1
DS-sig-004-P	4297	KMT2A	NA	NA	Somatic	C	G	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	13	462	0	355	11	118376887	118376887	C	G	S3424C	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,11,118376887,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL1_HUMAN&rb=2745&re=3657&var=S3424C	GRCh37	1	SNP	NA	NA	0	tCt/tGt	NA
DS-sig-024-P	4297	KMT2A	NA	NA	NA	C	-	DS-sig-024-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	352	635	0	513	11	118373398	118373398	C	-	T2262Pfs*12	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	tCc/tc	NA
DS-sig-029-P	4297	KMT2A	NA	NA	NA	C	-	DS-sig-029-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	143	978	0	605	11	118352476	118352476	C	-	D1227Efs*8	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	gaC/ga	NA
DS-sig-037-P	4297	KMT2A	NA	NA	Somatic	C	G	DS-sig-037-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	15	339	0	201	11	118368786	118368786	C	G	L1931V	Missense_Mutation	M	1.94	getma.org/?cm=var&var=hg19,11,118368786,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL1_HUMAN&rb=1900&re=1978&var=L1931V	GRCh37	1	SNP	NA	NA	0	Ctg/Gtg	NA
DS-sig-043-P	4297	KMT2A	NA	NA	Somatic	C	T	DS-sig-043-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	28	542	0	340	11	118376967	118376967	C	T	Q3451*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,11,118376967,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NA
DS-sig-038-P	4352	MPL	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	82	602	0	263	1	43814539	43814539	G	A	R445Q	Missense_Mutation	N	0.145	getma.org/?cm=var&var=hg19,1,43814539,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TPOR_HUMAN&rb=391&re=475&var=R445Q	GRCh37	1	SNP	NA	NA	0	cGa/cAa	NM_005373.2
P-0000083-T01-IM3	4352	MPL	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	163	687	0	264	1	43814592	43814592	G	C	A463P	Missense_Mutation	L	1.795	getma.org/?cm=var&var=hg19,1,43814592,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TPOR_HUMAN&rb=391&re=475&var=A463P	GRCh37	1	SNP	NA	NA	0	Gcc/Ccc	NM_005373.2
P-0000083-T01-IM3	4352	MPL	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	211	638	0	309	1	43818263	43818263	G	C	E576D	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,1,43818263,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TPOR_HUMAN&rb=476&re=635&var=E576D	GRCh37	1	SNP	NA	NA	0	gaG/gaC	NM_005373.2
DS-sig-006-P	4613	MYCN	NA	NA	Somatic	G	A	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	117	189	0	88	2	16082442	16082442	G	A	E86K	Missense_Mutation	L	1.15	getma.org/?cm=var&var=hg19,2,16082442,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYCN_HUMAN&rb=8&re=372&var=E86K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_005378.4
P-0000880-T01-IM3	4615	MYD88	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	39	590	0	243	3	38181402	38181402	G	A	E139K	Missense_Mutation	M	2.6	getma.org/?cm=var&var=hg19,3,38181402,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYD88_HUMAN&rb=109&re=162&var=E126K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_001172567.1
DS-sig-046-P	4683	NBN	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	211	711	0	691	8	90967691	90967691	G	A	S406F	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,8,90967691,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NBN_HUMAN&rb=301&re=500&var=S406F	GRCh37	-1	SNP	NA	NA	0	tCc/tTc	NM_002485.4
DS-sig-038-P	4763	NF1	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	163	1461	0	809	17	29677218	29677218	G	A	E2447K	Missense_Mutation	M	2.16	getma.org/?cm=var&var=hg19,17,29677218,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=2337&re=2536&var=E2447K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_001042492.2
DS-sig-004-P	4763	NF1	NA	NA	Somatic	C	G	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	86	1072	0	523	17	29587442	29587442	C	G	L1496V	Missense_Mutation	N	-0.69	getma.org/?cm=var&var=hg19,17,29587442,C,G&fts=all	getma.org/pdb.php?prot=NF1_HUMAN&from=1452&to=1590&var=L1496V	getma.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=1452&re=1590&var=L1496V	GRCh37	1	SNP	NA	NA	0	Ctt/Gtt	NM_001042492.2
DS-sig-004-P	4763	NF1	NA	NA	Somatic	G	C	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	52	737	0	373	17	29663685	29663685	G	C	K2060N	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,17,29663685,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=1937&re=2136&var=K2060N	GRCh37	1	SNP	NA	NA	0	aaG/aaC	NM_001042492.2
DS-sig-038-P	4763	NF1	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	121	1331	0	799	17	29653001	29653001	C	T	P1667S	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,17,29653001,C,T&fts=all	getma.org/pdb.php?prot=NF1_HUMAN&from=1591&to=1736&var=P1667S	getma.org/?cm=msa&ty=f&p=NF1_HUMAN&rb=1591&re=1736&var=P1667S	GRCh37	1	SNP	NA	NA	0	Cct/Tct	NM_001042492.2
P-0000423-T01-IM3	4763	NF1	MSK-IMPACT	MSK-IMPACT	NA	C	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	85	458	0	220	17	29559149	29559149	C	T	Q1086*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,29559149,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_001042492.2
DS-sig-003-P	4771	NF2	NA	NA	Somatic	C	T	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	98	484	0	298	22	30070841	30070841	C	T	Q453*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,22,30070841,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_000268.3,NM_016418.5,NM_181832.2
P-0000083-T01-IM3	4851	NOTCH1	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	65	298	0	161	9	139391824	139391824	G	A	Q2123*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,9,139391824,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_017617.3
P-0000083-T01-IM3	4851	NOTCH1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	58	431	0	174	9	139405160	139405160	G	C	C895W	Missense_Mutation	H	4.97	getma.org/?cm=var&var=hg19,9,139405160,G,C&fts=all	getma.org/pdb.php?prot=NOTC1_HUMAN&from=869&to=906&var=C895W	getma.org/?cm=msa&ty=f&p=NOTC1_HUMAN&rb=869&re=906&var=C895W	GRCh37	-1	SNP	NA	NA	0	tgC/tgG	NM_017617.3
P-0000083-T01-IM3	4851	NOTCH1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	89	395	0	151	9	139409078	139409078	G	C	I697M	Missense_Mutation	M	1.9	getma.org/?cm=var&var=hg19,9,139409078,G,C&fts=all	getma.org/pdb.php?prot=NOTC1_HUMAN&from=675&to=712&var=I697M	getma.org/?cm=msa&ty=f&p=NOTC1_HUMAN&rb=675&re=712&var=I697M	GRCh37	-1	SNP	NA	NA	0	atC/atG	NM_017617.3
DS-sig-010-P2	4853	NOTCH2	NA	NA	Somatic	G	A	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	15	244	0	165	1	120539740	120539740	G	A	Q211*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,120539740,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_024408.3
DS-sig-040-P1	4853	NOTCH2	NA	NA	Somatic	C	T	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	149	484	0	331	1	120462203	120462203	C	T	R1838Q	Missense_Mutation	M	2.44	getma.org/?cm=var&var=hg19,1,120462203,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NOTC2_HUMAN&rb=1678&re=1849&var=R1838Q	GRCh37	-1	SNP	NA	NA	0	cGa/cAa	NM_024408.3
P-0000083-T01-IM3	4853	NOTCH2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	85	413	0	192	1	120459046	120459046	C	G	G2100A	Missense_Mutation	L	1.675	getma.org/?cm=var&var=hg19,1,120459046,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NOTC2_HUMAN&rb=2076&re=2134&var=G2100A	GRCh37	-1	SNP	NA	NA	0	gGc/gCc	NM_024408.3
DS-sig-016-P	4854	NOTCH3	NA	NA	Somatic	G	C	DS-sig-016-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	185	510	0	405	19	15289922	15289922	G	C	S1211*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,19,15289922,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tCa/tGa	NM_000435.2
P-0002146-T01-IM3	4855	NOTCH4	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	24	361	0	310	6	32170271	32170271	G	A	R1113C	Missense_Mutation	M	2.395	getma.org/?cm=var&var=hg19,6,32170271,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NOTC4_HUMAN&rb=1087&re=1126&var=R1113C	GRCh37	-1	SNP	NA	NA	0.0002	Cgc/Tgc	NM_004557.3
DS-sig-007-P	4855	NOTCH4	NA	NA	Somatic	G	A	DS-sig-007-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	88	285	2	414	6	32170339	32170339	G	A	S1090F	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,6,32170339,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NOTC4_HUMAN&rb=1087&re=1126&var=S1090F	GRCh37	-1	SNP	NA	NA	0.00001	tCc/tTc	NM_004557.3
DS-sig-045-P2	4855	NOTCH4	NA	NA	Somatic	C	T	DS-sig-045-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	195	892	0	488	6	32184767	32184767	C	T	D606N	Missense_Mutation	L	0.87	getma.org/?cm=var&var=hg19,6,32184767,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NOTC4_HUMAN&rb=593&re=623&var=D606N	GRCh37	-1	SNP	NA	NA	0	Gat/Aat	NM_004557.3
DS-sig-046-P	4855	NOTCH4	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	48	216	0	300	6	32188547	32188547	G	A	P303L	Missense_Mutation	L	1.3	getma.org/?cm=var&var=hg19,6,32188547,G,A&fts=all	getma.org/pdb.php?prot=NOTC4_HUMAN&from=280&to=308&var=P303L	getma.org/?cm=msa&ty=f&p=NOTC4_HUMAN&rb=260&re=328&var=P303L	GRCh37	-1	SNP	NA	NA	0	cCa/cTa	NM_004557.3
P-0000083-T01-IM3	4869	NPM1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	147	477	0	164	5	170827184	170827184	G	C	E184D	Missense_Mutation	L	1.615	getma.org/?cm=var&var=hg19,5,170827184,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=NPM_HUMAN&rb=13&re=196&var=E184D	GRCh37	1	SNP	NA	NA	0	gaG/gaC	NM_002520.6
DS-sig-040-P1	4893	NRAS	NA	NA	Somatic	C	T	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	120	424	0	340	1	115258744	115258744	C	T	G13D	Missense_Mutation	M	3.325	getma.org/?cm=var&var=hg19,1,115258744,C,T&fts=all	getma.org/pdb.php?prot=RASN_HUMAN&from=5&to=165&var=G13D	getma.org/?cm=msa&ty=f&p=RASN_HUMAN&rb=5&re=165&var=G13D	GRCh37	-1	SNP	rs121434596	unknown	0.00001	gGt/gAt	NM_002524.4
DS-sig-040-P2	4893	NRAS	NA	NA	Somatic	C	T	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	104	515	0	340	1	115258744	115258744	C	T	G13D	Missense_Mutation	M	3.325	getma.org/?cm=var&var=hg19,1,115258744,C,T&fts=all	getma.org/pdb.php?prot=RASN_HUMAN&from=5&to=165&var=G13D	getma.org/?cm=msa&ty=f&p=RASN_HUMAN&rb=5&re=165&var=G13D	GRCh37	-1	SNP	rs121434596	unknown	0.00001	gGt/gAt	NM_002524.4
DS-sig-040-P3	4893	NRAS	NA	NA	Somatic	C	T	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	52	611	0	340	1	115258744	115258744	C	T	G13D	Missense_Mutation	M	3.325	getma.org/?cm=var&var=hg19,1,115258744,C,T&fts=all	getma.org/pdb.php?prot=RASN_HUMAN&from=5&to=165&var=G13D	getma.org/?cm=msa&ty=f&p=RASN_HUMAN&rb=5&re=165&var=G13D	GRCh37	-1	SNP	rs121434596	unknown	0.00001	gGt/gAt	NM_002524.4
P-0000083-T01-IM3	4914	NTRK1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	27	265	0	119	1	156851379	156851379	C	G	A779G	Missense_Mutation	N	0.505	getma.org/?cm=var&var=hg19,1,156851379,C,G&fts=all	getma.org/pdb.php?prot=NTRK1_HUMAN&from=510&to=781&var=A779G	getma.org/?cm=msa&ty=f&p=NTRK1_HUMAN&rb=510&re=781&var=A779G	GRCh37	1	SNP	NA	NA	0	gCc/gGc	NM_002529.3
P-0000083-T01-IM3	4915	NTRK2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	48	400	0	203	9	87549155	87549155	C	G	A555G	Missense_Mutation	N	-1.075	getma.org/?cm=var&var=hg19,9,87549155,C,G&fts=all	getma.org/pdb.php?prot=NTRK2_HUMAN&from=538&to=807&var=A555G	getma.org/?cm=msa&ty=f&p=NTRK2_HUMAN&rb=538&re=807&var=A555G	GRCh37	1	SNP	NA	NA	0	gCt/gGt	NA
P-0003826-T01-IM5	4915	NTRK2	MSKCC	NA	NA	C	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	328	750	0	322	9	87482330	87482330	G	C	Q523H	Missense_Mutation	N	-0.205	getma.org/?cm=var&var=hg19,9,87482330,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=NTRK2_HUMAN&rb=378&re=537&var=Q523H	GRCh37	1	SNP	NA	NA	0	caG/caC	NA
DS-sig-004-P	4916	NTRK3	NA	NA	Somatic	C	G	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	16	559	0	404	15	88420262	88420262	C	G	Q808H	Missense_Mutation	N	0.04	getma.org/?cm=var&var=hg19,15,88420262,C,G&fts=all	getma.org/pdb.php?prot=NTRK3_HUMAN&from=538&to=824&var=Q808H	getma.org/?cm=msa&ty=f&p=NTRK3_HUMAN&rb=538&re=824&var=Q808H	GRCh37	-1	SNP	NA	NA	0	caG/caC	NM_001012338.2
P-0000083-T01-IM3	4916	NTRK3	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	80	403	0	188	15	88420268	88420268	G	C	C806W	Missense_Mutation	H	4.145	getma.org/?cm=var&var=hg19,15,88420268,G,C&fts=all	getma.org/pdb.php?prot=NTRK3_HUMAN&from=538&to=824&var=C806W	getma.org/?cm=msa&ty=f&p=NTRK3_HUMAN&rb=538&re=824&var=C806W	GRCh37	-1	SNP	NA	NA	0	tgC/tgG	NM_001012338.2
P-0002607-T01-IM3	4921	DDR2	MSKCC	NA	NA	T	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	208	527	1	251	1	162688915	162688915	C	T	A21V	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,1,162688915,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DDR2_HUMAN&rb=1&re=44&var=A21V	GRCh37	1	SNP	NA	NA	0	gCa/gTa	NM_006182.2
DS-sig-020-P	5071	PRKN	NA	NA	Somatic	C	T	DS-sig-020-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	60	263	0	251	6	161781195	161781195	C	T	E404K	Missense_Mutation	M	3.2	getma.org/?cm=var&var=hg19,6,161781195,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PRKN2_HUMAN&rb=396&re=459&var=E404K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_004562.2
P-0000083-T01-IM3	5071	PRKN	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	132	570	0	268	6	161781164	161781164	G	C	T414S	Missense_Mutation	L	1.025	getma.org/?cm=var&var=hg19,6,161781164,G,C&fts=all	getma.org/pdb.php?prot=PRKN2_HUMAN&from=396&to=459&var=T414S	getma.org/?cm=msa&ty=f&p=PRKN2_HUMAN&rb=396&re=459&var=T414S	GRCh37	-1	SNP	NA	NA	0	aCc/aGc	NM_004562.2
P-0000083-T01-IM3	5079	PAX5	MSK-IMPACT	MSK-IMPACT	NA	GA	TT	NORMAL	GA	GA	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	84	313	0	154	9	37020683	37020684	GA	TT	I54K	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DNP	NA	NA	0	aTC/aAA	NM_001280556.1,NM_001280547.1,NM_001280548.1,NM_001280554.1,NM_0
P-0000083-T01-IM3	5133	PDCD1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	53	284	0	128	2	242794836	242794836	C	G	A125P	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,2,242794836,C,G&fts=all	getma.org/pdb.php?prot=PDCD1_HUMAN&from=33&to=144&var=A125P	getma.org/?cm=msa&ty=f&p=PDCD1_HUMAN&rb=33&re=144&var=A125P	GRCh37	-1	SNP	NA	NA	0	Gcc/Ccc	NM_005018.2
DS-sig-010-P1	5156	PDGFRA	NA	NA	Somatic	G	A	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	30	304	0	202	4	55152054	55152054	G	A	G829E	Missense_Mutation	N	0.225	getma.org/?cm=var&var=hg19,4,55152054,G,A&fts=all	getma.org/pdb.php?prot=PGFRA_HUMAN&from=593&to=950&var=G829E	getma.org/?cm=msa&ty=f&p=PGFRA_HUMAN&rb=593&re=950&var=G829E	GRCh37	1	SNP	NA	NA	0	gGa/gAa	NM_006206.4
DS-sig-046-P	5156	PDGFRA	NA	NA	Somatic	C	T	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	108	391	0	561	4	55138567	55138567	C	T	S415L	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,4,55138567,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PGFRA_HUMAN&rb=414&re=517&var=S415L	GRCh37	1	SNP	NA	NA	0	tCa/tTa	NM_006206.4
DS-sig-006-P	5159	PDGFRB	NA	NA	Somatic	C	T	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	160	265	0	234	5	149509431	149509431	C	T	E490K	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,5,149509431,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PGFRB_HUMAN&rb=416&re=524&var=E490K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_002609.3
DS-sig-010-P2	5288	PIK3C2G	NA	NA	Somatic	T	A	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	37	435	0	249	12	18435159	18435159	T	A	S48R	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,12,18435159,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=1&re=200&var=S48R	GRCh37	1	SNP	NA	NA	0	agT/agA	NA
DS-sig-010-P1	5288	PIK3C2G	NA	NA	Somatic	T	A	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	27	450	0	249	12	18435159	18435159	T	A	S48R	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,12,18435159,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=1&re=200&var=S48R	GRCh37	1	SNP	NA	NA	0	agT/agA	NA
DS-sig-010-P2	5288	PIK3C2G	NA	NA	Somatic	C	G	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	26	583	0	236	12	18439799	18439799	C	G	Q233E	Missense_Mutation	N	0.11	getma.org/?cm=var&var=hg19,12,18439799,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=P3C2G_HUMAN&rb=201&re=273&var=Q233E	GRCh37	1	SNP	NA	NA	0	Cag/Gag	NA
P-0000423-T01-IM3	5290	PIK3CA	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	63	155	0	163	3	178936091	178936091	G	A	E545K	Missense_Mutation	L	1.62	getma.org/?cm=var&var=hg19,3,178936091,G,A&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=519&to=704&var=E545K	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=519&re=704&var=E545K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_006218.2
P-0000880-T01-IM3	5290	PIK3CA	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	8	233	0	163	3	178936091	178936091	G	A	E545K	Missense_Mutation	L	1.62	getma.org/?cm=var&var=hg19,3,178936091,G,A&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=519&to=704&var=E545K	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=519&re=704&var=E545K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_006218.2
s_DS_sig_054_P	5290	PIK3CA	MSK-IMPACT341	MSK-IMPACT341	SOMATIC	G	A	s_DS_sig_054_N	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	31	497	0	218	3	178936082	178936082	G	A	E542K	Missense_Mutation	L	1.27	getma.org/?cm=var&var=hg19,3,178936082,G,A&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=519&to=704&var=E542K	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=519&re=704&var=E542K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_006218.2
DS-sig-003-P	5290	PIK3CA	NA	NA	Somatic	G	C	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	114	718	0	506	3	178952074	178952074	G	C	M1043I	Missense_Mutation	N	-1.43	getma.org/?cm=var&var=hg19,3,178952074,G,C&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=M1043I	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=M1043I	GRCh37	1	SNP	NA	NA	0	atG/atC	NM_006218.2
DS-sig-003-P	5290	PIK3CA	NA	NA	Somatic	G	C	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	101	805	0	570	3	178951994	178951994	G	C	D1017H	Missense_Mutation	M	2.02	getma.org/?cm=var&var=hg19,3,178951994,G,C&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=D1017H	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=D1017H	GRCh37	1	SNP	NA	NA	0	Gat/Cat	NM_006218.2
P-0000423-T01-IM3	5290	PIK3CA	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	46	647	0	387	3	178928079	178928079	G	C	E453Q	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,3,178928079,G,C&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=350&to=485&var=E453Q	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=350&re=485&var=E453Q	GRCh37	1	SNP	NA	NA	0	Gaa/Caa	NM_006218.2
DS-sig-003-P	5290	PIK3CA	NA	NA	Somatic	G	C	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	112	814	0	597	3	178951979	178951979	G	C	E1012Q	Missense_Mutation	M	2.04	getma.org/?cm=var&var=hg19,3,178951979,G,C&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=796&to=1015&var=E1012Q	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=796&re=1015&var=E1012Q	GRCh37	1	SNP	NA	NA	0	Gaa/Caa	NM_006218.2
DS-sig-024-P	5290	PIK3CA	NA	NA	Somatic	G	A	DS-sig-024-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	100	1349	1	864	3	178948076	178948076	G	A	E950K	Missense_Mutation	M	3.175	getma.org/?cm=var&var=hg19,3,178948076,G,A&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=796&to=1015&var=E950K	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=796&re=1015&var=E950K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_006218.2
P-0000083-T01-IM3	5292	PIM1	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	85	489	0	147	6	37139036	37139036	G	T	V126L	Missense_Mutation	N	-0.145	getma.org/?cm=var&var=hg19,6,37139036,G,T&fts=all	getma.org/pdb.php?prot=PIM1_HUMAN&from=129&to=381&var=V217L	getma.org/?cm=msa&ty=f&p=PIM1_HUMAN&rb=129&re=381&var=V217L	GRCh37	1	SNP	NA	NA	0	Gtg/Ttg	NM_002648.3,NM_001243186.1
DS-sig-046-P	5293	PIK3CD	NA	NA	NA	-	C	DS-sig-046-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	38	421	0	557	1	9783344	9783345	-	C	E866Gfs*8	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0	aac/aaCc	NM_005026.3
DS-sig-040-P1	5295	PIK3R1	NA	NA	Somatic	A	G	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	366	1171	0	802	5	67589592	67589592	A	G	Y452C	Missense_Mutation	M	2.085	getma.org/?cm=var&var=hg19,5,67589592,A,G&fts=all	getma.org/pdb.php?prot=P85A_HUMAN&from=409&to=608&var=Y452C	getma.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=409&re=608&var=Y452C	GRCh37	1	SNP	NA	NA	0	tAt/tGt	NM_181523.2
DS-sig-040-P2	5295	PIK3R1	NA	NA	Somatic	A	G	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	249	1527	0	802	5	67589592	67589592	A	G	Y452C	Missense_Mutation	M	2.085	getma.org/?cm=var&var=hg19,5,67589592,A,G&fts=all	getma.org/pdb.php?prot=P85A_HUMAN&from=409&to=608&var=Y452C	getma.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=409&re=608&var=Y452C	GRCh37	1	SNP	NA	NA	0	tAt/tGt	NM_181523.2
DS-sig-040-P3	5295	PIK3R1	NA	NA	Somatic	A	G	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	190	1970	0	802	5	67589592	67589592	A	G	Y452C	Missense_Mutation	M	2.085	getma.org/?cm=var&var=hg19,5,67589592,A,G&fts=all	getma.org/pdb.php?prot=P85A_HUMAN&from=409&to=608&var=Y452C	getma.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=409&re=608&var=Y452C	GRCh37	1	SNP	NA	NA	0	tAt/tGt	NM_181523.2
DS-sig-006-P	5295	PIK3R1	NA	NA	Somatic	G	A	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	237	342	0	350	5	67590490	67590490	G	A	E518K	Missense_Mutation	L	1.645	getma.org/?cm=var&var=hg19,5,67590490,G,A&fts=all	getma.org/pdb.php?prot=P85A_HUMAN&from=409&to=608&var=E518K	getma.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=409&re=608&var=E518K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_181523.2
DS-sig-006-P	5295	PIK3R1	NA	NA	Somatic	G	A	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	282	349	1	362	5	67591312	67591312	G	A	E604K	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,5,67591312,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=409&re=608&var=E604K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_181523.2
DS-sig-010-P2	5295	PIK3R1	NA	NA	Somatic	G	C	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	56	614	0	320	5	67591312	67591312	G	C	E604Q	Missense_Mutation	M	2.3	getma.org/?cm=var&var=hg19,5,67591312,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=409&re=608&var=E604Q	GRCh37	1	SNP	NA	NA	0	Gaa/Caa	NM_181523.2
DS-sig-045-P2	5295	PIK3R1	NA	NA	Somatic	G	A	DS-sig-045-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	277	1399	1	693	5	67590364	67590364	G	A	E476K	Missense_Mutation	M	2.54	getma.org/?cm=var&var=hg19,5,67590364,G,A&fts=all	getma.org/pdb.php?prot=P85A_HUMAN&from=409&to=608&var=E476K	getma.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=409&re=608&var=E476K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_181523.2
P-0000083-T01-IM3	5295	PIK3R1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	94	395	0	169	5	67576550	67576550	G	C	A277P	Missense_Mutation	N	-1.355	getma.org/?cm=var&var=hg19,5,67576550,G,C&fts=all	getma.org/pdb.php?prot=P85A_HUMAN&from=129&to=282&var=A277P	getma.org/?cm=msa&ty=f&p=P85A_HUMAN&rb=129&re=282&var=A277P	GRCh37	1	SNP	NA	NA	0	Gca/Cca	NM_181523.2
DS-sig-006-P	5426	POLE	NA	NA	Somatic	C	G	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	191	322	0	207	12	133244209	133244209	C	G	K733N	Missense_Mutation	M	3.3	getma.org/?cm=var&var=hg19,12,133244209,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=DPOE1_HUMAN&rb=616&re=1156&var=K733N	GRCh37	-1	SNP	NA	NA	0	aaG/aaC	NM_006231.2
DS-sig-016-P	5594	MAPK1	NA	NA	Somatic	G	A	DS-sig-016-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	10	166	0	118	22	22221688	22221688	G	A	R15C	Missense_Mutation	L	1.27	getma.org/?cm=var&var=hg19,22,22221688,G,A&fts=all	getma.org/pdb.php?prot=MK01_HUMAN&from=1&to=24&var=R15C	getma.org/?cm=msa&ty=f&p=MK01_HUMAN&rb=1&re=54&var=R15C	GRCh37	-1	SNP	NA	NA	0	Cgc/Tgc	NM_002745.4
P-0000083-T01-IM3	5727	PTCH1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	56	313	0	135	9	98231293	98231293	G	C	L664V	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,9,98231293,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PTC1_HUMAN&rb=362&re=1180&var=L664V	GRCh37	-1	SNP	NA	NA	0	Ctc/Gtc	NM_000264.3
DS-sig-020-P	5728	PTEN	NA	NA	Somatic	G	A	DS-sig-020-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	262	532	3	559	10	89692905	89692905	G	A	R130Q	Missense_Mutation	H	3.9	getma.org/?cm=var&var=hg19,10,89692905,G,A&fts=all	getma.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=R130Q	getma.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=R130Q	GRCh37	1	SNP	NA	NA	0	cGa/cAa	NM_000314.4
DS-sig-010-P2	5728	PTEN	NA	NA	Somatic	C	G	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	20	422	0	280	10	89685281	89685281	C	G	S59*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,10,89685281,C,G&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	tCa/tGa	NM_000314.4
P-0000083-T01-IM3	5728	PTEN	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	53	157	0	51	10	89692854	89692854	G	C	S113T	Missense_Mutation	L	1.31	getma.org/?cm=var&var=hg19,10,89692854,G,C&fts=all	getma.org/pdb.php?prot=PTEN_HUMAN&from=47&to=175&var=S113T	getma.org/?cm=msa&ty=f&p=PTEN_HUMAN&rb=47&re=175&var=S113T	GRCh37	1	SNP	NA	NA	0	aGt/aCt	NM_000314.4
DS-sig-039-P	5781	PTPN11	NA	NA	Somatic	A	G	DS-sig-039-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	65	846	0	339	12	112891162	112891162	A	G	K166E	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,12,112891162,A,G&fts=all	getma.org/pdb.php?prot=PTN11_HUMAN&from=112&to=197&var=K166E	getma.org/?cm=msa&ty=f&p=PTN11_HUMAN&rb=112&re=197&var=K166E	GRCh37	1	SNP	NA	NA	0	Aaa/Gaa	NM_002834.3
DS-sig-003-P	5789	PTPRD	NA	NA	Somatic	C	A	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	81	672	0	386	9	8331643	8331643	C	A	G1825C	Missense_Mutation	M	2.23	getma.org/?cm=var&var=hg19,9,8331643,C,A&fts=all	getma.org/pdb.php?prot=PTPRD_HUMAN&from=1669&to=1902&var=G1825C	getma.org/?cm=msa&ty=f&p=PTPRD_HUMAN&rb=1669&re=1902&var=G1825C	GRCh37	-1	SNP	NA	NA	0	Ggc/Tgc	NA
DS-sig-016-P	5789	PTPRD	NA	NA	Somatic	G	A	DS-sig-016-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	123	249	1	444	9	8500882	8500882	G	A	S667L	Missense_Mutation	M	2.015	getma.org/?cm=var&var=hg19,9,8500882,G,A&fts=all	getma.org/pdb.php?prot=PTPRD_HUMAN&from=610&to=699&var=S667L	getma.org/?cm=msa&ty=f&p=PTPRD_HUMAN&rb=610&re=699&var=S667L	GRCh37	-1	SNP	NA	NA	0.00003	tCg/tTg	NA
s_DS_sig_054_P	5802	PTPRS	MSK-IMPACT341	MSK-IMPACT341	SOMATIC	CA	-	s_DS_sig_054_N	CA	CA	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	25	304	0	205	19	5212252	5212253	CA	-	V1593Gfs*14	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0	gTG/g	NM_002850.3
P-0000880-T01-IM3	5925	RB1	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	32	503	0	358	13	48916759	48916759	G	T	E97*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,13,48916759,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Gaa/Taa	NM_000321.2
P-0000880-T01-IM3	5925	RB1	MSK-IMPACT	MSK-IMPACT	NA	C	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	44	629	0	485	13	48936983	48936983	C	T	R251*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,13,48936983,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_000321.2
DS-sig-039-P	5925	RB1	NA	NA	Somatic	C	T	DS-sig-039-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	212	1648	2	810	13	48953760	48953760	C	T	R455*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,13,48953760,C,T&fts=all	NA	NA	GRCh37	1	SNP	rs121913302	NA	0	Cga/Tga	NM_000321.2
DS-sig-045-P2	5925	RB1	NA	NA	Somatic	C	T	DS-sig-045-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	286	1079	4	644	13	49039374	49039374	C	T	R787*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,13,49039374,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_000321.2
DS-sig-006-P	5925	RB1	NA	NA	NA	CA	-	DS-sig-006-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	209	405	0	276	13	49027133	49027134	CA	-	P568Ffs*3	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	tCA/t	NM_000321.2
DS-sig-007-P	5925	RB1	NA	NA	Somatic	C	G	DS-sig-007-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	198	507	0	639	13	48953735	48953735	C	G	Y446*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,13,48953735,C,G&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	taC/taG	NM_000321.2
DS-sig-024-P	5925	RB1	NA	NA	NA	C	-	DS-sig-024-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	184	715	0	841	13	48881441	48881441	C	-	P55Lfs*10	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	Cct/ct	NM_000321.2
DS-sig-046-P	5925	RB1	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	108	297	2	532	13	49030486	49030486	G	A	X654_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_000321.2
P-0002146-T01-IM3	5925	RB1	MSK-IMPACT	MSK-IMPACT	NA	G	-	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	54	392	0	259	13	48937091	48937091	G	-	E287Rfs*2	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	Gag/ag	NM_000321.2
P-0002607-T01-IM3	5925	RB1	MSKCC	NA	NA	A	A	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	148	374	0	265	13	48947603	48947603	C	A	S397*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,13,48947603,C,A&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	tCa/tAa	NM_000321.2
P-0002607-T01-IM3	5925	RB1	MSKCC	NA	NA	A	A	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	134	345	0	254	13	48947618	48947618	C	A	S402Y	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,13,48947618,C,A&fts=all	getma.org/pdb.php?prot=RB_HUMAN&from=373&to=573&var=S402Y	getma.org/?cm=msa&ty=f&p=RB_HUMAN&rb=373&re=573&var=S402Y	GRCh37	1	SNP	NA	NA	0	tCc/tAc	NM_000321.2
P-0000083-T01-IM3	5927	KDM5A	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	109	404	0	172	12	416735	416735	G	C	A1272G	Missense_Mutation	L	1.495	getma.org/?cm=var&var=hg19,12,416735,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=KDM5A_HUMAN&rb=1219&re=1418&var=A1272G	GRCh37	-1	SNP	NA	NA	0	gCc/gGc	NM_001042603.1
DS-sig-038-P	5966	REL	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	128	1199	1	771	2	61145603	61145603	C	T	Q239*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,61145603,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Caa/Taa	NM_002908.2
P-0000083-T01-IM3	6016	RIT1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	109	735	0	213	1	155874172	155874172	C	G	R120P	Missense_Mutation	M	3.09	getma.org/?cm=var&var=hg19,1,155874172,C,G&fts=all	getma.org/pdb.php?prot=RIT1_HUMAN&from=23&to=184&var=R120P	getma.org/?cm=msa&ty=f&p=RIT1_HUMAN&rb=23&re=184&var=R120P	GRCh37	-1	SNP	NA	NA	0	cGa/cCa	NM_006912.5
DS-sig-010-P2	6098	ROS1	NA	NA	Somatic	G	C	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	27	290	0	159	6	117609921	117609921	G	C	P2260A	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,6,117609921,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ROS1_HUMAN&rb=2201&re=2347&var=P2260A	GRCh37	-1	SNP	NA	NA	0	Cca/Gca	NM_002944.2
P-0000423-T01-IM3	6098	ROS1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	129	593	0	262	6	117717422	117717422	G	C	S262C	Missense_Mutation	M	2.49	getma.org/?cm=var&var=hg19,6,117717422,G,C&fts=all	getma.org/pdb.php?prot=ROS1_HUMAN&from=194&to=281&var=S262C	getma.org/?cm=msa&ty=f&p=ROS1_HUMAN&rb=194&re=281&var=S262C	GRCh37	-1	SNP	NA	NA	0	tCt/tGt	NM_002944.2
DS-sig-043-P	6198	RPS6KB1	NA	NA	Somatic	G	A	DS-sig-043-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	36	644	0	414	17	58024067	58024067	G	A	R499Q	Missense_Mutation	L	1.24	getma.org/?cm=var&var=hg19,17,58024067,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=KS6B1_HUMAN&rb=418&re=525&var=R499Q	GRCh37	1	SNP	NA	NA	0	cGa/cAa	NM_001272044.1,NM_003161.3,NM_001272060.1,NM_001272043.1
DS-sig-038-P	6416	MAP2K4	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	108	1019	0	574	17	11998898	11998898	C	T	R134W	Missense_Mutation	M	2.885	getma.org/?cm=var&var=hg19,17,11998898,C,T&fts=all	getma.org/pdb.php?prot=MP2K4_HUMAN&from=102&to=367&var=R134W	getma.org/?cm=msa&ty=f&p=MP2K4_HUMAN&rb=102&re=367&var=R134W	GRCh37	1	SNP	NA	NA	0	Cgg/Tgg	NM_003010.3
DS-sig-007-P	6597	SMARCA4	NA	NA	Somatic	G	C	DS-sig-007-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	41	682	0	547	19	11118656	11118656	G	C	D694H	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,19,11118656,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMCA4_HUMAN&rb=656&re=756&var=D694H	GRCh37	1	SNP	NA	NA	0	Gac/Cac	NM_003072.3
DS-sig-008-P	6597	SMARCA4	NA	NA	Somatic	T	C	DS-sig-008-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	82	588	0	323	19	11130339	11130339	T	C	Y860H	Missense_Mutation	H	3.89	getma.org/?cm=var&var=hg19,19,11130339,T,C&fts=all	getma.org/pdb.php?prot=SMCA4_HUMAN&from=757&to=1052&var=Y860H	getma.org/?cm=msa&ty=f&p=SMCA4_HUMAN&rb=757&re=1052&var=Y860H	GRCh37	1	SNP	NA	NA	0	Tac/Cac	NM_003072.3
DS-sig-038-P	6597	SMARCA4	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	60	732	0	236	19	11144143	11144143	G	A	E1242K	Missense_Mutation	M	2.885	getma.org/?cm=var&var=hg19,19,11144143,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMCA4_HUMAN&rb=1084&re=1246&var=E1242K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_003072.3
DS-sig-038-P	6597	SMARCA4	NA	NA	Somatic	G	C	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	61	1013	0	326	19	11170759	11170759	G	C	E1603Q	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,19,11170759,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMCA4_HUMAN&rb=1552&re=1647&var=E1603Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NM_003072.3
DS-sig-038-P	6597	SMARCA4	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	53	920	0	331	19	11170793	11170793	G	A	R1614Q	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,19,11170793,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMCA4_HUMAN&rb=1552&re=1647&var=R1614Q	GRCh37	1	SNP	NA	NA	0	cGg/cAg	NM_003072.3
P-0000083-T01-IM3	6597	SMARCA4	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	109	353	0	439	19	11123705	11123705	G	C	K785N	Missense_Mutation	H	4.105	getma.org/?cm=var&var=hg19,19,11123705,G,C&fts=all	getma.org/pdb.php?prot=SMCA4_HUMAN&from=757&to=1052&var=K785N	getma.org/?cm=msa&ty=f&p=SMCA4_HUMAN&rb=757&re=1052&var=K785N	GRCh37	1	SNP	NA	NA	0	aaG/aaC	NM_003072.3
DS-sig-042-P	6598	SMARCB1	NA	NA	Somatic	G	A	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	91	746	0	583	22	24134024	24134024	G	A	E59K	Missense_Mutation	M	2.14	getma.org/?cm=var&var=hg19,22,24134024,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SNF5_HUMAN&rb=1&re=177&var=E59K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_003073.3
DS-sig-042-P	6598	SMARCB1	NA	NA	Somatic	G	A	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	143	293	0	308	22	24176327	24176327	G	A	X373_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_003073.3
DS-sig-008-P	6608	SMO	NA	NA	Somatic	C	T	DS-sig-008-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	61	602	1	361	7	128850271	128850271	C	T	R512C	Missense_Mutation	M	2.905	getma.org/?cm=var&var=hg19,7,128850271,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMO_HUMAN&rb=220&re=555&var=R512C	GRCh37	1	SNP	NA	NA	0	Cgc/Tgc	NM_005631.4
DS-sig-006-P	6657	SOX2	NA	NA	Somatic	G	A	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	28	143	0	85	3	181430654	181430654	G	A	G169D	Missense_Mutation	M	2.69	getma.org/?cm=var&var=hg19,3,181430654,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SOX2_HUMAN&rb=110&re=200&var=G169D	GRCh37	1	SNP	NA	NA	0	gGc/gAc	NM_003106.3
DS-sig-003-P	6790	AURKA	NA	NA	Somatic	G	A	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	30	577	2	385	20	54961474	54961474	G	A	S53F	Missense_Mutation	L	1.085	getma.org/?cm=var&var=hg19,20,54961474,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=AURKA_HUMAN&rb=1&re=200&var=S53F	GRCh37	-1	SNP	NA	NA	0	tCt/tTt	NM_198436.1
DS-sig-038-P	6790	AURKA	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	124	886	0	421	20	54958078	54958078	G	A	Q177*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,20,54958078,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_198436.1
P-0000083-T01-IM3	6794	STK11	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	119	483	0	157	19	1223034	1223034	C	G	P324R	Missense_Mutation	M	2.295	getma.org/?cm=var&var=hg19,19,1223034,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=STK11_HUMAN&rb=310&re=433&var=P324R	GRCh37	1	SNP	NA	NA	0	cCg/cGg	NM_000455.4
DS-sig-012-P	6850	SYK	NA	NA	Somatic	C	T	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	29	280	0	199	9	93607755	93607755	C	T	Q153*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,9,93607755,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_001174167.1
P-0000083-T01-IM3	6850	SYK	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	48	366	0	174	9	93606514	93606514	G	C	G112R	Missense_Mutation	L	1.845	getma.org/?cm=var&var=hg19,9,93606514,G,C&fts=all	getma.org/pdb.php?prot=KSYK_HUMAN&from=93&to=167&var=G112R	getma.org/?cm=msa&ty=f&p=KSYK_HUMAN&rb=93&re=167&var=G112R	GRCh37	1	SNP	NA	NA	0	Ggg/Cgg	NM_001174167.1
P-0000083-T01-IM3	6926	TBX3	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	118	497	0	208	12	115109672	115109672	C	G	D736H	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,12,115109672,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBX3_HUMAN&rb=614&re=743&var=D736H	GRCh37	-1	SNP	NA	NA	0	Gac/Cac	NM_016569.3
P-0000083-T01-IM3	6926	TBX3	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	74	306	0	150	12	115112624	115112624	C	G	E372D	Missense_Mutation	N	0.605	getma.org/?cm=var&var=hg19,12,115112624,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBX3_HUMAN&rb=323&re=413&var=E372D	GRCh37	-1	SNP	NA	NA	0	gaG/gaC	NM_016569.3
P-0000083-T01-IM3	6927	HNF1A	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	111	569	0	315	12	121416777	121416777	G	C	G69A	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,12,121416777,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=HNF1A_HUMAN&rb=1&re=176&var=G69A	GRCh37	1	SNP	NA	NA	0	gGc/gCc	NA
DS-sig-018-P	7015	TERT	NA	NA	Somatic	G	A	DS-sig-018-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	8	25	0	10	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
DS-sig-003-P	7015	TERT	NA	NA	Somatic	G	A	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	18	23	0	17	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
P-0000423-T01-IM3	7015	TERT	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	305	195	0	188	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
P-0000880-T01-IM3	7015	TERT	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	13	242	0	188	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
P-0003826-T01-IM5	7015	TERT	MSKCC	NA	NA	A	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	82	170	0	188	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
P-0002607-T01-IM3	7015	TERT	MSKCC	NA	NA	A	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	111	129	0	188	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
P-0002146-T01-IM3	7015	TERT	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	21	89	0	188	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
DS-sig-002-P	7015	TERT	NA	NA	Somatic	G	A	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	6	12	0	19	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
s_DS_sig_054_P	7015	TERT	MSK-IMPACT341	MSK-IMPACT341	SOMATIC	G	A	s_DS_sig_054_N	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	35	102	0	62	5	1295228	1295228	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
DS-sig-029-P	7015	TERT	NA	NA	Somatic	G	A	DS-sig-029-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	8	43	0	19	5	1295250	1295250	G	A	Promoter	5'Flank	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_198253.2,NM_001193376.1
DS-sig-007-P	7015	TERT	NA	NA	Somatic	C	T	DS-sig-007-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	209	194	0	219	5	1294376	1294376	C	T	E209K	Missense_Mutation	L	1.15	getma.org/?cm=var&var=hg19,5,1294376,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TERT_HUMAN&rb=180&re=379&var=E209K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_198253.2,NM_001193376.1
DS-sig-046-P	7015	TERT	NA	NA	Somatic	C	T	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	76	255	1	486	5	1264586	1264586	C	T	G926S	Missense_Mutation	N	-1.1	getma.org/?cm=var&var=hg19,5,1264586,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TERT_HUMAN&rb=605&re=935&var=G926S	GRCh37	-1	SNP	NA	NA	0.00006	Ggc/Agc	NM_198253.2,NM_001193376.1
P-0000083-T01-IM3	7113	TMPRSS2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	86	407	0	180	21	42845307	42845307	C	G	G282R	Missense_Mutation	H	4.35	getma.org/?cm=var&var=hg19,21,42845307,C,G&fts=all	getma.org/pdb.php?prot=TMPS2_HUMAN&from=256&to=484&var=G282R	getma.org/?cm=msa&ty=f&p=TMPS2_HUMAN&rb=256&re=484&var=G282R	GRCh37	-1	SNP	NA	NA	0	Gga/Cga	NM_005656.3
P-0003826-T01-IM5	7113	TMPRSS2	MSKCC	NA	NA	C	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	372	759	0	327	21	42848513	42848513	G	C	R240G	Missense_Mutation	M	2.515	getma.org/?cm=var&var=hg19,21,42848513,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TMPS2_HUMAN&rb=157&re=242&var=R240G	GRCh37	-1	SNP	NA	NA	0	Cgc/Ggc	NM_005656.3
DS-sig-043-P	7157	TP53	NA	NA	Somatic	C	T	DS-sig-043-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	24	411	0	388	17	7577085	7577085	C	T	E285K	Missense_Mutation	M	3.07	getma.org/?cm=var&var=hg19,17,7577085,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=E285K	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=E285K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-029-P	7157	TP53	NA	NA	Somatic	C	T	DS-sig-029-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	104	943	0	587	17	7577085	7577085	C	T	E285K	Missense_Mutation	M	3.07	getma.org/?cm=var&var=hg19,17,7577085,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=E285K	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=E285K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
P-0000423-T01-IM3	7157	TP53	MSK-IMPACT	MSK-IMPACT	NA	C	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	224	311	0	579	17	7577099	7577099	C	T	R280K	Missense_Mutation	M	3.33	getma.org/?cm=var&var=hg19,17,7577099,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R280K	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R280K	GRCh37	-1	SNP	NA	NA	0	aGa/aAa	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
P-0000880-T01-IM3	7157	TP53	MSK-IMPACT	MSK-IMPACT	NA	C	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	49	687	1	802	17	7578211	7578211	C	T	R213Q	Missense_Mutation	M	3.315	getma.org/?cm=var&var=hg19,17,7578211,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R213Q	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R213Q	GRCh37	-1	SNP	NA	NA	0	cGa/cAa	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-044-P	7157	TP53	NA	NA	Somatic	G	A	DS-sig-044-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	72	641	2	360	17	7578212	7578212	G	A	R213*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,7578212,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cga/Tga	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-045-P2	7157	TP53	NA	NA	Somatic	C	T	DS-sig-045-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	196	495	4	284	17	7578403	7578403	C	T	C176Y	Missense_Mutation	M	3.36	getma.org/?cm=var&var=hg19,17,7578403,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C176Y	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C176Y	GRCh37	-1	SNP	NA	NA	0	tGc/tAc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-004-P	7157	TP53	NA	NA	Somatic	G	A	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	105	451	0	401	17	7577539	7577539	G	A	R248W	Missense_Mutation	M	3.315	getma.org/?cm=var&var=hg19,17,7577539,G,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R248W	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R248W	GRCh37	-1	SNP	NA	NA	0	Cgg/Tgg	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-046-P	7157	TP53	NA	NA	Somatic	C	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	110	367	0	580	17	7578461	7578461	C	A	V157F	Missense_Mutation	M	2.815	getma.org/?cm=var&var=hg19,17,7578461,C,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V157F	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V157F	GRCh37	-1	SNP	rs121912654	NA	0	Gtc/Ttc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-027-P	7157	TP53	NA	NA	Somatic	T	C	DS-sig-027-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	46	1037	0	249	17	7578235	7578235	T	C	Y205C	Missense_Mutation	M	2.99	getma.org/?cm=var&var=hg19,17,7578235,T,C&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=Y205C	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=Y205C	GRCh37	-1	SNP	NA	NA	0	tAt/tGt	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
P-0002607-T01-IM3	7157	TP53	MSKCC	NA	NA	T	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	301	360	1	437	17	7577082	7577082	C	T	E286K	Missense_Mutation	M	3.27	getma.org/?cm=var&var=hg19,17,7577082,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=E286K	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=E286K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-013-P	7157	TP53	NA	NA	Somatic	T	C	DS-sig-013-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	19	355	0	111	17	7578208	7578208	T	C	H214R	Missense_Mutation	M	2.305	getma.org/?cm=var&var=hg19,17,7578208,T,C&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=H214R	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=H214R	GRCh37	-1	SNP	NA	NA	0	cAt/cGt	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
P-0002146-T01-IM3	7157	TP53	MSK-IMPACT	MSK-IMPACT	NA	C	A	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	27	364	0	402	17	7577547	7577547	C	A	G245V	Missense_Mutation	M	3.255	getma.org/?cm=var&var=hg19,17,7577547,C,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245V	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245V	GRCh37	-1	SNP	COSM1646856	Cosmic	0	gGc/gTc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-024-P	7157	TP53	NA	NA	Somatic	C	G	DS-sig-024-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	311	607	0	358	17	7578262	7578262	C	G	R196P	Missense_Mutation	M	3.25	getma.org/?cm=var&var=hg19,17,7578262,C,G&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R196P	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R196P	GRCh37	-1	SNP	NA	NA	0	cGa/cCa	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-040-P1	7157	TP53	NA	NA	Somatic	G	A	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	170	425	0	432	17	7578550	7578550	G	A	S127F	Missense_Mutation	M	3.17	getma.org/?cm=var&var=hg19,17,7578550,G,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=S127F	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=S127F	GRCh37	-1	SNP	novel	null	0	tCc/tTc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-012-P	7157	TP53	NA	NA	Somatic	C	T	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	103	189	1	220	17	7577548	7577548	C	T	G245S	Missense_Mutation	M	2.705	getma.org/?cm=var&var=hg19,17,7577548,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245S	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245S	GRCh37	-1	SNP	NA	NA	0	Ggc/Agc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-040-P2	7157	TP53	NA	NA	Somatic	C	T	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	95	517	0	341	17	7577548	7577548	C	T	G245S	Missense_Mutation	M	2.705	getma.org/?cm=var&var=hg19,17,7577548,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245S	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245S	GRCh37	-1	SNP	NA	NA	0	Ggc/Agc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-018-P	7157	TP53	NA	NA	Somatic	C	T	DS-sig-018-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	170	655	0	336	17	7578413	7578413	C	T	V173M	Missense_Mutation	M	3.31	getma.org/?cm=var&var=hg19,17,7578413,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V173M	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V173M	GRCh37	-1	SNP	NA	NA	0	Gtg/Atg	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-002-P	7157	TP53	NA	NA	Somatic	G	T	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	48	446	0	457	17	7577559	7577559	G	T	S241Y	Missense_Mutation	M	3.345	getma.org/?cm=var&var=hg19,17,7577559,G,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=S241Y	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=S241Y	GRCh37	-1	SNP	NA	NA	0	tCc/tAc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
P-0002146-T01-IM3	7157	TP53	MSK-IMPACT	MSK-IMPACT	NA	T	G	NORMAL	T	T	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	22	334	0	347	17	7577508	7577508	T	G	E258A	Missense_Mutation	M	2.955	getma.org/?cm=var&var=hg19,17,7577508,T,G&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=E258A	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=E258A	GRCh37	-1	SNP	NA	NA	0	gAa/gCa	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-020-P	7157	TP53	NA	NA	Somatic	C	T	DS-sig-020-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	99	273	0	393	17	7577556	7577556	C	T	C242Y	Missense_Mutation	M	3.345	getma.org/?cm=var&var=hg19,17,7577556,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C242Y	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C242Y	GRCh37	-1	SNP	rs121912655|rs397516437	NA	0	tGc/tAc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-046-P	7157	TP53	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	115	354	3	560	17	7578458	7578458	G	A	R158C	Missense_Mutation	M	2.92	getma.org/?cm=var&var=hg19,17,7578458,G,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R158C	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R158C	GRCh37	-1	SNP	NA	NA	0.00001	Cgc/Tgc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
P-0000083-T01-IM3	7157	TP53	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	107	370	0	370	17	7576927	7576927	C	G	X307_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-002-P	7157	TP53	NA	NA	Somatic	C	G	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	36	328	0	345	17	7578380	7578380	C	G	D184H	Missense_Mutation	M	2.595	getma.org/?cm=var&var=hg19,17,7578380,C,G&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=D184H	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=D184H	GRCh37	-1	SNP	NA	NA	0	Gat/Cat	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
P-0000083-T01-IM3	7157	TP53	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	64	266	0	129	17	7578390	7578390	C	G	E180D	Missense_Mutation	M	2.69	getma.org/?cm=var&var=hg19,17,7578390,C,G&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=E180D	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=E180D	GRCh37	-1	SNP	NA	NA	0	gaG/gaC	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
P-0000083-T01-IM3	7157	TP53	MSK-IMPACT	MSK-IMPACT	NA	GG	AT	NORMAL	GG	GG	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	66	358	1	154	17	7579389	7579390	GG	AT	Q100*	Nonsense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DNP	NA	NA	0	tcCCag/tcATag	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
DS-sig-042-P	7248	TSC1	NA	NA	Somatic	G	A	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	144	257	0	272	9	135781386	135781386	G	A	Q527*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,9,135781386,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_001162426.1,NM_001162427.1,NM_000368.4
DS-sig-007-P	7248	TSC1	NA	NA	Somatic	G	C	DS-sig-007-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	96	386	0	376	9	135778016	135778016	G	C	F789L	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,9,135778016,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TSC1_HUMAN&rb=720&re=820&var=F789L	GRCh37	-1	SNP	NA	NA	0	ttC/ttG	NM_001162426.1,NM_001162427.1,NM_000368.4
DS-sig-002-P	7249	TSC2	NA	NA	Somatic	G	A	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	38	342	2	606	16	2106696	2106696	G	A	E234K	Missense_Mutation	M	2.11	getma.org/?cm=var&var=hg19,16,2106696,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TSC2_HUMAN&rb=168&re=472&var=E234K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_000548.3
DS-sig-020-P	7249	TSC2	NA	NA	Somatic	G	A	DS-sig-020-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	13	367	2	360	16	2124261	2124261	G	A	V806M	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,16,2124261,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TSC2_HUMAN&rb=550&re=904&var=V806M	GRCh37	1	SNP	NA	NA	0	Gtg/Atg	NM_000548.3
P-0003826-T01-IM5	7253	TSHR	MSKCC	NA	NA	T	T	NORMAL	A	A	NA	NA	NA	NA	NA	NA	NA	NA	Unknown	MSK-IMPACT	NA	354	704	0	303	14	81534600	81534600	A	T	Y82F	Missense_Mutation	L	1.875	getma.org/?cm=var&var=hg19,14,81534600,A,T&fts=all	getma.org/pdb.php?prot=TSHR_HUMAN&from=52&to=114&var=Y82F	getma.org/?cm=msa&ty=f&p=TSHR_HUMAN&rb=52&re=114&var=Y82F	GRCh37	1	SNP	NA	NA	0	tAc/tTc	NA
DS-sig-004-P	7307	U2AF1	NA	NA	Somatic	C	T	DS-sig-004-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	81	634	2	453	21	44515579	44515579	C	T	G106E	Missense_Mutation	L	1.73	getma.org/?cm=var&var=hg19,21,44515579,C,T&fts=all	getma.org/pdb.php?prot=U2AF1_HUMAN&from=91&to=145&var=G106E	getma.org/?cm=msa&ty=f&p=U2AF1_HUMAN&rb=91&re=145&var=G106E	GRCh37	-1	SNP	NA	NA	0	gGa/gAa	NM_006758.2
DS-sig-029-P	7403	KDM6A	NA	NA	NA	G	-	DS-sig-029-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	120	556	0	392	X	44922937	44922937	G	-	G600Efs*25	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	Gga/ga	NM_021140.2
DS-sig-012-P	7454	WAS	NA	NA	Somatic	G	A	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	39	204	0	193	X	48547439	48547439	G	A	G441E	Missense_Mutation	M	2.9	getma.org/?cm=var&var=hg19,X,48547439,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=WASP_HUMAN&rb=407&re=474&var=G441E	GRCh37	1	SNP	NA	NA	0	gGa/gAa	NM_000377.2
DS-sig-042-P	7514	XPO1	NA	NA	Somatic	C	G	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	297	1318	0	753	2	61753598	61753598	C	G	R62T	Missense_Mutation	M	2.955	getma.org/?cm=var&var=hg19,2,61753598,C,G&fts=all	getma.org/pdb.php?prot=XPO1_HUMAN&from=46&to=112&var=R62T	getma.org/?cm=msa&ty=f&p=XPO1_HUMAN&rb=46&re=112&var=R62T	GRCh37	-1	SNP	NA	NA	0	aGa/aCa	NM_003400.3
DS-sig-006-P	7525	YES1	NA	NA	Somatic	C	A	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	70	602	0	205	18	756825	756825	C	A	M1?	Translation_Start_Site	NA	0	getma.org/?cm=var&var=hg19,18,756825,C,A&fts=all	NA	http://getma.org/?cm=msa&ty=f&p=YES_HUMAN&rb=1&re=96&var=M1I	GRCh37	-1	SNP	NA	NA	0	atG/atT	NM_005433.3
DS-sig-012-P	8085	KMT2D	NA	NA	Somatic	G	A	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	29	271	1	305	12	49427951	49427951	G	A	R3547C	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,12,49427951,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL2_HUMAN&rb=3478&re=3570&var=R3547C	GRCh37	-1	SNP	NA	NA	0	Cgc/Tgc	NM_003482.3
DS-sig-016-P	8085	KMT2D	NA	NA	Somatic	G	A	DS-sig-016-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	82	167	0	132	12	49427072	49427072	G	A	Q3806*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,12,49427072,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_003482.3
DS-sig-018-P	8085	KMT2D	NA	NA	NA	G	-	DS-sig-018-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	77	834	0	412	12	49416462	49416462	G	-	L5417*	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0	Cta/ta	NM_003482.3
DS-sig-018-P	8085	KMT2D	NA	NA	NA	G	-	DS-sig-018-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	105	1025	0	476	12	49433883	49433883	G	-	P2557Rfs*26	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0	cCg/cg	NM_003482.3
DS-sig-042-P	8085	KMT2D	NA	NA	Somatic	C	G	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	132	442	0	347	12	49418709	49418709	C	G	E5269Q	Missense_Mutation	L	1.075	getma.org/?cm=var&var=hg19,12,49418709,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL2_HUMAN&rb=5236&re=5323&var=E5269Q	GRCh37	-1	SNP	NA	NA	0	Gag/Cag	NM_003482.3
P-0000083-T01-IM3	8085	KMT2D	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	96	461	0	175	12	49415831	49415831	C	G	E5506Q	Missense_Mutation	M	2.765	getma.org/?cm=var&var=hg19,12,49415831,C,G&fts=all	getma.org/pdb.php?prot=MLL2_HUMAN&from=5408&to=5513&var=E5506Q	getma.org/?cm=msa&ty=f&p=MLL2_HUMAN&rb=5408&re=5513&var=E5506Q	GRCh37	-1	SNP	NA	NA	0	Gag/Cag	NM_003482.3
P-0000083-T01-IM3	8085	KMT2D	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	155	646	0	250	12	49421682	49421682	G	C	S4849R	Missense_Mutation	N	0.77	getma.org/?cm=var&var=hg19,12,49421682,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL2_HUMAN&rb=4541&re=5019&var=S4849R	GRCh37	-1	SNP	NA	NA	0	agC/agG	NM_003482.3
P-0000083-T01-IM3	8085	KMT2D	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	63	191	0	95	12	49435117	49435117	G	T	P2146T	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,12,49435117,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL2_HUMAN&rb=2078&re=2277&var=P2146T	GRCh37	-1	SNP	NA	NA	0	Ccg/Acg	NM_003482.3
DS-sig-002-P	8289	ARID1A	NA	NA	Somatic	C	T	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	73	555	0	650	1	27057835	27057835	C	T	Q515*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,27057835,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_006015.4
DS-sig-045-P2	8289	ARID1A	NA	NA	Somatic	C	T	DS-sig-045-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	359	697	4	393	1	27056349	27056349	C	T	Q449*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,27056349,C,T&fts=all	NA	NA	GRCh37	1	SNP	.	NA	0	Cag/Tag	NM_006015.4
DS-sig-006-P	8289	ARID1A	NA	NA	Somatic	G	C	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	588	720	0	248	1	27056171	27056171	G	C	K389N	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,1,27056171,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ARI1A_HUMAN&rb=1&re=588&var=K389N	GRCh37	1	SNP	NA	NA	0	aaG/aaC	NM_006015.4
DS-sig-012-P	8289	ARID1A	NA	NA	Somatic	C	T	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	45	334	0	234	1	27023429	27023429	C	T	P179S	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,1,27023429,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ARI1A_HUMAN&rb=1&re=588&var=P179S	GRCh37	1	SNP	NA	NA	0.0012	Cct/Tct	NM_006015.4
DS-sig-038-P	8289	ARID1A	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	158	528	0	271	1	27107023	27107023	C	T	Q2212*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,27107023,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_006015.4
DS-sig-038-P	8289	ARID1A	NA	NA	NA	G	-	DS-sig-038-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	109	778	0	388	1	27100152	27100152	G	-	M1318Cfs*163	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	tcG/tc	NM_006015.4
DS-sig-040-P2	8289	ARID1A	NA	NA	Somatic	A	T	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	18	798	0	417	1	27105766	27105766	A	T	K1793*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,27105766,A,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Aag/Tag	NM_006015.4
DS-sig-042-P	8289	ARID1A	NA	NA	NA	AC	-	DS-sig-042-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	237	676	0	380	1	27056200	27056201	AC	-	N399Tfs*223	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0	aAC/a	NM_006015.4
P-0000083-T01-IM3	8289	ARID1A	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	68	317	0	146	1	27094349	27094349	G	C	E1019D	Missense_Mutation	L	0.98	getma.org/?cm=var&var=hg19,1,27094349,G,C&fts=all	getma.org/pdb.php?prot=ARI1A_HUMAN&from=1015&to=1104&var=E1019D	getma.org/?cm=msa&ty=f&p=ARI1A_HUMAN&rb=1015&re=1104&var=E1019D	GRCh37	1	SNP	NA	NA	0	gaG/gaC	NM_006015.4
P-0000083-T01-IM3	8312	AXIN1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	103	399	0	177	16	396196	396196	G	C	A277G	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,16,396196,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=AXIN1_HUMAN&rb=211&re=410&var=A277G	GRCh37	-1	SNP	NA	NA	0	gCc/gGc	NM_003502.3
P-0000083-T01-IM3	8313	AXIN2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	179	629	0	254	17	63526111	63526111	C	G	V839L	Missense_Mutation	L	0.99	getma.org/?cm=var&var=hg19,17,63526111,C,G&fts=all	getma.org/pdb.php?prot=AXIN2_HUMAN&from=761&to=843&var=V839L	getma.org/?cm=msa&ty=f&p=AXIN2_HUMAN&rb=761&re=843&var=V839L	GRCh37	-1	SNP	NA	NA	0	Gtg/Ctg	NM_004655.3
DS-sig-040-P1	8314	BAP1	NA	NA	Somatic	C	A	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	164	296	0	346	3	52436691	52436691	C	A	X662_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_004656.3
DS-sig-040-P2	8314	BAP1	NA	NA	Somatic	C	A	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	100	429	0	346	3	52436691	52436691	C	A	X662_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_004656.3
DS-sig-040-P3	8314	BAP1	NA	NA	Somatic	C	A	DS-sig-040-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	69	576	0	346	3	52436691	52436691	C	A	X662_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_004656.3
DS-sig-002-P	8314	BAP1	NA	NA	Somatic	G	A	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	35	288	0	321	3	52436624	52436624	G	A	Q684*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,3,52436624,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_004656.3
DS-sig-020-P	8314	BAP1	NA	NA	Somatic	G	T	DS-sig-020-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	25	727	0	557	3	52441324	52441324	G	T	P149Q	Missense_Mutation	M	2.595	getma.org/?cm=var&var=hg19,3,52441324,G,T&fts=all	getma.org/pdb.php?prot=BAP1_HUMAN&from=4&to=217&var=P149Q	getma.org/?cm=msa&ty=f&p=BAP1_HUMAN&rb=4&re=217&var=P149Q	GRCh37	-1	SNP	NA	NA	0	cCa/cAa	NM_004656.3
P-0000083-T01-IM3	8452	CUL3	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	114	577	0	188	2	225371704	225371704	G	C	Y300*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,225371704,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	taC/taG	NM_003590.4
P-0000083-T01-IM3	8452	CUL3	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	137	768	0	316	2	225449660	225449660	C	G	X22_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_003590.4
DS-sig-039-P	8503	PIK3R3	NA	NA	Somatic	C	T	DS-sig-039-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	124	996	0	407	1	46543286	46543286	C	T	X72_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_003629.3
P-0000083-T01-IM3	8503	PIK3R3	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	75	320	0	125	1	46509356	46509356	G	C	L459V	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,1,46509356,G,C&fts=all	getma.org/pdb.php?prot=P55G_HUMAN&from=433&to=461&var=L459V	getma.org/?cm=msa&ty=f&p=P55G_HUMAN&rb=403&re=461&var=L459V	GRCh37	-1	SNP	NA	NA	0	Ctt/Gtt	NM_003629.3
DS-sig-029-P	8660	IRS2	NA	NA	NA	CGG	-	DS-sig-029-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	8	52	0	16	13	110436297	110436299	CGG	-	A701del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.0019	gCCGtg/gtg	NM_003749.2
DS-sig-012-P	8660	IRS2	NA	NA	Somatic	C	T	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	36	140	0	100	13	110434487	110434487	C	T	G1305E	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,13,110434487,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=IRS2_HUMAN&rb=1297&re=1338&var=G1305E	GRCh37	-1	SNP	NA	NA	0	gGg/gAg	NM_003749.2
DS-sig-046-P	8660	IRS2	NA	NA	Somatic	C	T	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	11	20	0	62	13	110437865	110437865	C	T	G179E	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,13,110437865,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=IRS2_HUMAN&rb=145&re=193&var=G179E	GRCh37	-1	SNP	NA	NA	0	gGg/gAg	NM_003749.2
DS-sig-010-P1	8929	PHOX2B	NA	NA	NA	CCG	-	DS-sig-010-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	26	0	42	4	41748119	41748121	CCG	-	G217del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.0008	ggCGGg/ggg	NM_003924.3
P-0000083-T01-IM3	8929	PHOX2B	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	33	157	0	87	4	41748112	41748112	G	C	S219R	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,4,41748112,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PHX2B_HUMAN&rb=211&re=312&var=S219R	GRCh37	-1	SNP	NA	NA	0	agC/agG	NM_003924.3
P-0000083-T01-IM3	8986	RPS6KA4	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	79	260	0	97	11	64127734	64127734	C	G	A76G	Missense_Mutation	N	0.775	getma.org/?cm=var&var=hg19,11,64127734,C,G&fts=all	getma.org/pdb.php?prot=KS6A4_HUMAN&from=33&to=301&var=A76G	getma.org/?cm=msa&ty=f&p=KS6A4_HUMAN&rb=33&re=301&var=A76G	GRCh37	1	SNP	NA	NA	0	gCc/gGc	NM_003942.2
P-0000423-T01-IM3	9314	KLF4	MSK-IMPACT	MSK-IMPACT	NA	G	A	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	110	401	0	235	9	110250088	110250088	G	A	S196L	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,9,110250088,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=KLF4_HUMAN&rb=10&re=261&var=S196L	GRCh37	-1	SNP	NA	NA	0	tCg/tTg	NM_004235.4
P-0000083-T01-IM3	9611	NCOR1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	182	854	0	344	17	15974887	15974887	C	G	G1330R	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,17,15974887,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NCOR1_HUMAN&rb=1271&re=1470&var=G1330R	GRCh37	-1	SNP	NA	NA	0	Ggt/Cgt	NM_006311.3
P-0000083-T01-IM3	9611	NCOR1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	83	349	0	180	17	15979006	15979006	G	C	A1171G	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,17,15979006,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=NCOR1_HUMAN&rb=1071&re=1270&var=A1171G	GRCh37	-1	SNP	NA	NA	0	gCt/gGt	NM_006311.3
DS-sig-042-P	9641	IKBKE	NA	NA	Somatic	C	T	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	236	388	0	287	1	206651106	206651106	C	T	T239M	Missense_Mutation	M	2.505	getma.org/?cm=var&var=hg19,1,206651106,C,T&fts=all	getma.org/pdb.php?prot=IKKE_HUMAN&from=9&to=302&var=T239M	getma.org/?cm=msa&ty=f&p=IKKE_HUMAN&rb=9&re=302&var=T239M	GRCh37	1	SNP	NA	NA	0.00006	aCg/aTg	NM_014002.3,NM_001193322.1
P-0000083-T01-IM3	9641	IKBKE	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	116	217	0	76	1	206649641	206649641	G	C	G159A	Missense_Mutation	H	4.195	getma.org/?cm=var&var=hg19,1,206649641,G,C&fts=all	getma.org/pdb.php?prot=IKKE_HUMAN&from=9&to=302&var=G159A	getma.org/?cm=msa&ty=f&p=IKKE_HUMAN&rb=9&re=302&var=G159A	GRCh37	1	SNP	NA	NA	0	gGc/gCc	NM_014002.3,NM_001193322.1
P-0000083-T01-IM3	9641	IKBKE	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	68	496	0	163	1	206653821	206653821	C	G	L458V	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,1,206653821,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=IKKE_HUMAN&rb=348&re=712&var=L458V	GRCh37	1	SNP	NA	NA	0	Ctg/Gtg	NM_014002.3,NM_001193322.1
DS-sig-006-P	9817	KEAP1	NA	NA	Somatic	G	C	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	151	212	5	155	19	10602303	10602303	G	C	I425M	Missense_Mutation	M	2.045	getma.org/?cm=var&var=hg19,19,10602303,G,C&fts=all	getma.org/pdb.php?prot=KEAP1_HUMAN&from=412&to=457&var=I425M	getma.org/?cm=msa&ty=f&p=KEAP1_HUMAN&rb=412&re=457&var=I425M	GRCh37	-1	SNP	NA	NA	0.00001	atC/atG	NM_203500.1
P-0000083-T01-IM3	9817	KEAP1	MSK-IMPACT	MSK-IMPACT	NA	CTC	TTG	NORMAL	CTC	CTC	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	173	674	0	290	19	10599950	10599952	CTC	TTG	E542Q	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	TNP	NA	NA	0	GAG/CAA	NM_203500.1
P-0000083-T01-IM3	9817	KEAP1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	138	500	0	269	19	10602432	10602432	G	C	N382K	Missense_Mutation	L	1.745	getma.org/?cm=var&var=hg19,19,10602432,G,C&fts=all	getma.org/pdb.php?prot=KEAP1_HUMAN&from=361&to=410&var=N382K	getma.org/?cm=msa&ty=f&p=KEAP1_HUMAN&rb=361&re=410&var=N382K	GRCh37	-1	SNP	NA	NA	0	aaC/aaG	NM_203500.1
P-0000083-T01-IM3	9817	KEAP1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	127	343	0	197	19	10602641	10602641	G	C	P313A	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,19,10602641,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=KEAP1_HUMAN&rb=287&re=317&var=P313A	GRCh37	-1	SNP	NA	NA	0	Ccc/Gcc	NM_203500.1
DS-sig-002-P	9863	MAGI2	NA	NA	Somatic	C	T	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	53	653	0	374	7	77708320	77708320	C	T	G1217E	Missense_Mutation	L	1.705	getma.org/?cm=var&var=hg19,7,77708320,C,T&fts=all	getma.org/pdb.php?prot=MAGI2_HUMAN&from=1147&to=1226&var=G1217E	getma.org/?cm=msa&ty=f&p=MAGI2_HUMAN&rb=1147&re=1226&var=G1217E	GRCh37	-1	SNP	NA	NA	0	gGa/gAa	NM_012301.3
DS-sig-020-P	9968	MED12	NA	NA	Somatic	G	T	DS-sig-020-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	33	657	2	512	X	70339931	70339931	G	T	R155L	Missense_Mutation	M	2.05	getma.org/?cm=var&var=hg19,X,70339931,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MED12_HUMAN&rb=101&re=161&var=R155L	GRCh37	1	SNP	NA	NA	0	cGg/cTg	NA
DS-sig-002-P	9968	MED12	NA	NA	Somatic	G	A	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	61	460	2	616	X	70356480	70356480	G	A	R1792H	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,X,70356480,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MED12_HUMAN&rb=1758&re=1816&var=R1792H	GRCh37	1	SNP	NA	NA	0	cGc/cAc	NA
DS-sig-010-P2	10111	RAD50	NA	NA	Somatic	G	C	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	29	404	0	277	5	131930715	131930715	G	C	E511Q	Missense_Mutation	L	1.6	getma.org/?cm=var&var=hg19,5,131930715,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RAD50_HUMAN&rb=635&re=734&var=E650Q	GRCh37	1	SNP	NA	NA	0	Gaa/Caa	NM_005732.3
P-0000083-T01-IM3	10111	RAD50	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	80	383	0	137	5	131940691	131940691	G	C	K767N	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,5,131940691,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RAD50_HUMAN&rb=830&re=950&var=K906N	GRCh37	1	SNP	NA	NA	0	aaG/aaC	NM_005732.3
DS-sig-006-P	10413	YAP1	NA	NA	Somatic	C	T	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	125	653	1	255	11	101984938	101984938	C	T	P129S	Missense_Mutation	M	2.285	getma.org/?cm=var&var=hg19,11,101984938,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=YAP1_HUMAN&rb=1&re=159&var=P129S	GRCh37	1	SNP	NA	NA	0	Cca/Tca	NM_001130145.2,NM_001282101.1
DS-sig-029-P	10413	YAP1	NA	NA	Somatic	G	A	DS-sig-029-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	152	1027	1	475	11	102098222	102098222	G	A	E396K	Missense_Mutation	L	1.67	getma.org/?cm=var&var=hg19,11,102098222,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=YAP1_HUMAN&rb=262&re=461&var=E396K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_001130145.2,NM_001282101.1
DS-sig-039-P	10413	YAP1	NA	NA	Somatic	G	A	DS-sig-039-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	283	787	1	314	11	102098248	102098248	G	A	M404I	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,11,102098248,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=YAP1_HUMAN&rb=262&re=461&var=M404I	GRCh37	1	SNP	NA	NA	0	atG/atA	NM_001130145.2,NM_001282101.1
DS-sig-038-P	10499	NCOA2	NA	NA	Somatic	C	T	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	93	945	0	423	8	71078810	71078810	C	T	E241K	Missense_Mutation	M	2.395	getma.org/?cm=var&var=hg19,8,71078810,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NCOA2_HUMAN&rb=216&re=415&var=E241K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_006540.2
P-0000083-T01-IM3	10664	CTCF	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	52	281	0	97	16	67645423	67645423	G	T	E230*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,16,67645423,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Gaa/Taa	NM_006565.3
P-0000083-T01-IM3	10735	STAG2	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	201	206	0	112	X	123179189	123179189	G	C	R213T	Missense_Mutation	H	3.54	getma.org/?cm=var&var=hg19,X,123179189,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=STAG2_HUMAN&rb=154&re=273&var=R213T	GRCh37	1	SNP	NA	NA	0	aGa/aCa	NM_001042751.1
P-0000083-T01-IM3	10735	STAG2	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	229	374	0	167	X	123190067	123190067	G	C	G429A	Missense_Mutation	L	1.155	getma.org/?cm=var&var=hg19,X,123190067,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=STAG2_HUMAN&rb=274&re=473&var=G429A	GRCh37	1	SNP	NA	NA	0	gGa/gCa	NM_001042751.1
P-0000083-T01-IM3	10735	STAG2	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	286	467	0	163	X	123197055	123197055	G	C	K607N	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,X,123197055,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=STAG2_HUMAN&rb=474&re=673&var=K607N	GRCh37	1	SNP	NA	NA	0	aaG/aaC	NM_001042751.1
DS-sig-027-P	10957	PNRC1	NA	NA	NA	-	C	DS-sig-027-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	3	30	0	12	6	89791136	89791137	-	C	L177Pfs*31	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0	acc/aCcc	NM_006813.2
DS-sig-002-P	11122	PTPRT	NA	NA	Somatic	C	G	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	28	351	0	372	20	40979327	40979327	C	G	E602D	Missense_Mutation	M	2.05	getma.org/?cm=var&var=hg19,20,40979327,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PTPRT_HUMAN&rb=589&re=726&var=E602D	GRCh37	-1	SNP	NA	NA	0	gaG/gaC	NA
DS-sig-024-P	11122	PTPRT	NA	NA	Somatic	G	C	DS-sig-024-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	19	482	0	249	20	40710585	40710585	G	C	I1403M	Missense_Mutation	N	0.715	getma.org/?cm=var&var=hg19,20,40710585,G,C&fts=all	getma.org/pdb.php?prot=PTPRT_HUMAN&from=1202&to=1436&var=I1403M	getma.org/?cm=msa&ty=f&p=PTPRT_HUMAN&rb=1202&re=1436&var=I1403M	GRCh37	-1	SNP	NA	NA	0	atC/atG	NA
DS-sig-024-P	11122	PTPRT	NA	NA	Somatic	G	A	DS-sig-024-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	30	765	0	336	20	41076930	41076930	G	A	P497L	Missense_Mutation	L	1.195	getma.org/?cm=var&var=hg19,20,41076930,G,A&fts=all	getma.org/pdb.php?prot=PTPRT_HUMAN&from=481&to=584&var=P497L	getma.org/?cm=msa&ty=f&p=PTPRT_HUMAN&rb=481&re=584&var=P497L	GRCh37	-1	SNP	NA	NA	0	cCc/cTc	NA
DS-sig-042-P	11200	CHEK2	NA	NA	Somatic	G	A	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	100	784	0	498	22	29091821	29091821	G	A	S379F	Missense_Mutation	L	1.165	getma.org/?cm=var&var=hg19,22,29091821,G,A&fts=all	getma.org/pdb.php?prot=CHK2_HUMAN&from=220&to=486&var=S379F	getma.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=220&re=486&var=S379F	GRCh37	-1	SNP	NA	NA	0	tCt/tTt	NM_007194.3
DS-sig-042-P	11200	CHEK2	NA	NA	Somatic	G	C	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	199	474	0	315	22	29091193	29091193	G	C	Q433E	Missense_Mutation	N	-0.02	getma.org/?cm=var&var=hg19,22,29091193,G,C&fts=all	getma.org/pdb.php?prot=CHK2_HUMAN&from=220&to=486&var=Q433E	getma.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=220&re=486&var=Q433E	GRCh37	-1	SNP	NA	NA	0	Caa/Gaa	NM_007194.3
DS-sig-042-P	11200	CHEK2	NA	NA	Somatic	G	A	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	126	844	2	585	22	29091764	29091764	G	A	S398F	Missense_Mutation	L	1.17	getma.org/?cm=var&var=hg19,22,29091764,G,A&fts=all	getma.org/pdb.php?prot=CHK2_HUMAN&from=220&to=486&var=S398F	getma.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=220&re=486&var=S398F	GRCh37	-1	SNP	NA	NA	0	tCt/tTt	NM_007194.3
P-0000083-T01-IM3	23013	SPEN	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	81	278	0	119	1	16258048	16258048	G	C	E1771D	Missense_Mutation	N	0.625	getma.org/?cm=var&var=hg19,1,16258048,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MINT_HUMAN&rb=1591&re=1839&var=E1771D	GRCh37	1	SNP	NA	NA	0	gaG/gaC	NM_015001.2
P-0000083-T01-IM3	23013	SPEN	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	50	220	0	96	1	16259495	16259495	C	G	Q2254E	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,1,16259495,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MINT_HUMAN&rb=2201&re=2707&var=Q2254E	GRCh37	1	SNP	NA	NA	0	Cag/Gag	NM_015001.2
P-0000083-T01-IM3	23152	CIC	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	237	691	0	207	19	42790996	42790996	C	G	S47R	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,19,42790996,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CIC_HUMAN&rb=16&re=177&var=S47R	GRCh37	1	SNP	NA	NA	0	agC/agG	NM_015125.3
DS-sig-020-P	23405	DICER1	NA	NA	Somatic	C	T	DS-sig-020-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	131	585	0	458	14	95557642	95557642	C	T	G1809R	Missense_Mutation	H	3.935	getma.org/?cm=var&var=hg19,14,95557642,C,T&fts=all	getma.org/pdb.php?prot=DICER_HUMAN&from=1702&to=1824&var=G1809R	getma.org/?cm=msa&ty=f&p=DICER_HUMAN&rb=1702&re=1824&var=G1809R	GRCh37	-1	SNP	NA	NA	0	Ggg/Agg	NM_177438.2
P-0000083-T01-IM3	23405	DICER1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	46	296	0	107	14	95560257	95560257	C	G	E1778Q	Missense_Mutation	L	1.425	getma.org/?cm=var&var=hg19,14,95560257,C,G&fts=all	getma.org/pdb.php?prot=DICER_HUMAN&from=1702&to=1824&var=E1778Q	getma.org/?cm=msa&ty=f&p=DICER_HUMAN&rb=1702&re=1824&var=E1778Q	GRCh37	-1	SNP	NA	NA	0	Gag/Cag	NM_177438.2
P-0000423-T01-IM3	23405	DICER1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	214	753	0	269	14	95593075	95593075	G	C	Q249E	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,14,95593075,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DICER_HUMAN&rb=214&re=413&var=Q249E	GRCh37	-1	SNP	NA	NA	0	Cag/Gag	NM_177438.2
DS-sig-006-P	23451	SF3B1	NA	NA	Somatic	C	T	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	245	664	0	241	2	198265453	198265453	C	T	E902K	Missense_Mutation	M	3.455	getma.org/?cm=var&var=hg19,2,198265453,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SF3B1_HUMAN&rb=858&re=1057&var=E902K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_012433.2
DS-sig-029-P	23451	SF3B1	NA	NA	Somatic	C	T	DS-sig-029-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	74	782	0	520	2	198265453	198265453	C	T	E902K	Missense_Mutation	M	3.455	getma.org/?cm=var&var=hg19,2,198265453,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SF3B1_HUMAN&rb=858&re=1057&var=E902K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_012433.2
P-0000083-T01-IM3	23476	BRD4	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	384	1270	0	487	19	15366932	15366932	G	C	A565G	Missense_Mutation	L	1.495	getma.org/?cm=var&var=hg19,19,15366932,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=BRD4_HUMAN&rb=446&re=645&var=A565G	GRCh37	-1	SNP	NA	NA	0	gCc/gGc	NM_058243.2
P-0000083-T01-IM3	23476	BRD4	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	173	781	0	273	19	15379774	15379774	G	C	A122G	Missense_Mutation	L	1.895	getma.org/?cm=var&var=hg19,19,15379774,G,C&fts=all	getma.org/pdb.php?prot=BRD4_HUMAN&from=67&to=152&var=A122G	getma.org/?cm=msa&ty=f&p=BRD4_HUMAN&rb=67&re=152&var=A122G	GRCh37	-1	SNP	NA	NA	0	gCt/gGt	NM_058243.2
P-0000083-T01-IM3	29072	SETD2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	123	623	0	218	3	47103679	47103679	C	G	E2089D	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,3,47103679,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SETD2_HUMAN&rb=1810&re=2390&var=E2089D	GRCh37	-1	SNP	NA	NA	0	gaG/gaC	NM_014159.6
P-0000083-T01-IM3	51684	SUFU	MSK-IMPACT	MSK-IMPACT	NA	-	T	NORMAL	-	-	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	132	576	0	232	10	104263980	104263981	-	T	A25Gfs*23	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0	ccg/ccTg	NM_016169.3
DS-sig-038-P	51755	CDK12	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	82	903	0	407	17	37618602	37618602	G	A	R93Q	Missense_Mutation	L	1.245	getma.org/?cm=var&var=hg19,17,37618602,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CDK12_HUMAN&rb=66&re=341&var=R93Q	GRCh37	1	SNP	NA	NA	0	cGa/cAa	NM_015083.1,NM_016507.2
P-0000083-T01-IM3	51755	CDK12	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	81	186	0	119	17	37681084	37681084	G	C	A1085P	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,17,37681084,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CDK12_HUMAN&rb=1021&re=1220&var=A1085P	GRCh37	1	SNP	NA	NA	0	Gca/Cca	NM_015083.1,NM_016507.2
P-0000423-T01-IM3	54790	TET2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	43	326	0	177	4	106157480	106157480	C	G	S794*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,106157480,C,G&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	tCa/tGa	NM_001127208.2
DS-sig-012-P	54880	BCOR	NA	NA	Somatic	G	C	DS-sig-012-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	25	253	0	218	X	39922887	39922887	G	C	S1274C	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,X,39922887,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=BCOR_HUMAN&rb=756&re=1389&var=S1274C	GRCh37	-1	SNP	NA	NA	0	tCt/tGt	NM_001123385.1
DS-sig-037-P	54894	RNF43	NA	NA	Somatic	G	A	DS-sig-037-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	13	275	1	227	17	56435317	56435317	G	A	S607L	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,17,56435317,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RNF43_HUMAN&rb=421&re=781&var=S607L	GRCh37	-1	SNP	NA	NA	0.00003	tCg/tTg	NA
DS-sig-016-P	55193	PBRM1	NA	NA	Somatic	C	A	DS-sig-016-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	65	157	0	439	3	52610715	52610715	C	A	X1178_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NA
DS-sig-040-P2	55193	PBRM1	NA	NA	NA	GCTCTC	-	DS-sig-040-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	48	641	0	370	3	52651490	52651495	GCTCTC	-	R534_E535del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0	cGAGAGCca/cca	NA
P-0000083-T01-IM3	55193	PBRM1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	206	788	0	301	3	52696244	52696244	G	C	L145V	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,52696244,G,C&fts=all	getma.org/pdb.php?prot=PB1_HUMAN&from=140&to=185&var=L145V	getma.org/?cm=msa&ty=f&p=PB1_HUMAN&rb=140&re=185&var=L145V	GRCh37	-1	SNP	NA	NA	0	Ctt/Gtt	NA
DS-sig-006-P	55294	FBXW7	NA	NA	Somatic	C	T	DS-sig-006-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	134	386	1	206	4	153251953	153251953	C	T	W351*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,153251953,C,T&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tgG/tgA	NM_033632.3
P-0003826-T01-IM5	55294	FBXW7	.	NA	NA	-	-	NORMAL	C	C	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	255	260	0	186	4	153249522	153249522	C	-	G419Dfs*11	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	NA	0	gGa/ga	NM_033632.3
DS-sig-038-P	57492	ARID1B	NA	NA	Somatic	G	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	93	635	0	326	6	157528895	157528895	G	A	R2194K	Missense_Mutation	N	-1.135	getma.org/?cm=var&var=hg19,6,157528895,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ARI1B_HUMAN&rb=2183&re=2236&var=R2194K	GRCh37	1	SNP	NA	NA	0	aGa/aAa	NM_017519.2
DS-sig-040-P1	58508	KMT2C	NA	NA	NA	-	T	DS-sig-040-N	A	A	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	69	901	0	476	7	151874012	151874013	-	T	N2842Kfs*2	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	NA	NA	0	aat/aaAt	NM_170606.2
DS-sig-013-P	58508	KMT2C	NA	NA	Somatic	C	T	DS-sig-013-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	26	558	0	62	7	151970925	151970925	C	T	A293T	Missense_Mutation	H	3.81	getma.org/?cm=var&var=hg19,7,151970925,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL3_HUMAN&rb=252&re=331&var=A293T	GRCh37	-1	SNP	NA	NA	0	Gcc/Acc	NM_170606.2
DS-sig-002-P	58508	KMT2C	NA	NA	Somatic	C	T	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	74	572	0	253	7	151874191	151874191	C	T	D2783N	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,7,151874191,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL3_HUMAN&rb=2267&re=2787&var=D2783N	GRCh37	-1	SNP	NA	NA	0	Gat/Aat	NM_170606.2
DS-sig-042-P	58508	KMT2C	NA	NA	Somatic	C	T	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	138	414	0	303	7	151845271	151845271	C	T	E4581K	Missense_Mutation	N	0.77	getma.org/?cm=var&var=hg19,7,151845271,C,T&fts=all	getma.org/pdb.php?prot=MLL3_HUMAN&from=4550&to=4604&var=E4581K	getma.org/?cm=msa&ty=f&p=MLL3_HUMAN&rb=4550&re=4604&var=E4581K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_170606.2
P-0000083-T01-IM3	58508	KMT2C	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	70	208	0	80	7	151853111	151853111	C	G	Q3948H	Missense_Mutation	L	1.52	getma.org/?cm=var&var=hg19,7,151853111,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL3_HUMAN&rb=3236&re=4394&var=Q3948H	GRCh37	-1	SNP	NA	NA	0	caG/caC	NM_170606.2
P-0000423-T01-IM3	58508	KMT2C	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	90	221	0	92	7	151884912	151884912	G	C	L1561V	Missense_Mutation	L	1.3	getma.org/?cm=var&var=hg19,7,151884912,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL3_HUMAN&rb=1461&re=1660&var=L1561V	GRCh37	-1	SNP	NA	NA	0	Ctc/Gtc	NM_170606.2
P-0000083-T01-IM3	64324	NSD1	MSK-IMPACT	MSK-IMPACT	NA	GC	CA	NORMAL	GC	GC	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	97	478	0	190	5	176665423	176665424	GC	CA	Q1370K	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DNP	NA	NA	0	ccGCag/ccCAag	NM_022455.4
P-0000083-T01-IM3	64326	COP1	MSK-IMPACT	MSK-IMPACT	NA	C	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	35	418	0	91	1	176104222	176104222	C	T	E298K	Missense_Mutation	N	0.755	getma.org/?cm=var&var=hg19,1,176104222,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RFWD2_HUMAN&rb=176&re=375&var=E298K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_022457.5
P-0000083-T01-IM3	64326	COP1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	94	688	0	204	1	176145047	176145047	C	G	L188F	Missense_Mutation	M	2.19	getma.org/?cm=var&var=hg19,1,176145047,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=RFWD2_HUMAN&rb=176&re=375&var=L188F	GRCh37	-1	SNP	NA	NA	0	ttG/ttC	NM_022457.5
DS-sig-042-P	79577	CDC73	NA	NA	Somatic	G	A	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	276	1220	0	487	1	193107221	193107221	G	A	E144K	Missense_Mutation	L	0.83	getma.org/?cm=var&var=hg19,1,193107221,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CDC73_HUMAN&rb=1&re=200&var=E144K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_024529.4
DS-sig-046-P	79577	CDC73	NA	NA	Somatic	G	C	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	265	887	0	898	1	193202245	193202245	G	C	R426T	Missense_Mutation	M	3.02	getma.org/?cm=var&var=hg19,1,193202245,G,C&fts=all	getma.org/pdb.php?prot=CDC73_HUMAN&from=233&to=525&var=R426T	getma.org/?cm=msa&ty=f&p=CDC73_HUMAN&rb=233&re=525&var=R426T	GRCh37	1	SNP	NA	NA	0	aGa/aCa	NM_024529.4
DS-sig-010-P2	79633	FAT4	NA	NA	Somatic	C	T	DS-sig-010-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	16	308	0	135	4	126367653	126367653	C	T	Q2467*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,126367653,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_024582.4
DS-sig-045-P2	79633	FAT4	NA	NA	Somatic	G	A	DS-sig-045-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	259	1092	2	457	4	126328080	126328080	G	A	D1785N	Missense_Mutation	N	0.555	getma.org/?cm=var&var=hg19,4,126328080,G,A&fts=all	getma.org/pdb.php?prot=FAT4_HUMAN&from=1746&to=1832&var=D1785N	getma.org/?cm=msa&ty=f&p=FAT4_HUMAN&rb=1746&re=1832&var=D1785N	GRCh37	1	SNP	NA	NA	0	Gat/Aat	NM_024582.4
DS-sig-046-P	79633	FAT4	NA	NA	Somatic	G	A	DS-sig-046-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	256	967	1	763	4	126384729	126384729	G	A	E3936K	Missense_Mutation	M	2.4	getma.org/?cm=var&var=hg19,4,126384729,G,A&fts=all	getma.org/pdb.php?prot=FAT4_HUMAN&from=3900&to=3942&var=E3936K	getma.org/?cm=msa&ty=f&p=FAT4_HUMAN&rb=3900&re=3942&var=E3936K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_024582.4
DS-sig-002-P	79728	PALB2	NA	NA	Somatic	C	G	DS-sig-002-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	83	753	0	460	16	23641581	23641581	C	G	E632Q	Missense_Mutation	M	1.95	getma.org/?cm=var&var=hg19,16,23641581,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PALB2_HUMAN&rb=1&re=1184&var=E632Q	GRCh37	-1	SNP	NA	NA	0	Gaa/Caa	NM_024675.3
DS-sig-042-P	79728	PALB2	NA	NA	Somatic	C	G	DS-sig-042-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	21	389	0	209	16	23641001	23641001	C	G	R825T	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,16,23641001,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PALB2_HUMAN&rb=1&re=1184&var=R825T	GRCh37	-1	SNP	NA	NA	0.0002	aGa/aCa	NM_024675.3
P-0000083-T01-IM3	79728	PALB2	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	133	649	0	340	16	23641471	23641471	C	G	M668I	Missense_Mutation	L	1.61	getma.org/?cm=var&var=hg19,16,23641471,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PALB2_HUMAN&rb=1&re=1184&var=M668I	GRCh37	-1	SNP	NA	NA	0	atG/atC	NM_024675.3
DS-sig-029-P	80312	TET1	NA	NA	Somatic	C	T	DS-sig-029-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	54	569	0	366	10	70333465	70333465	C	T	S457L	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,10,70333465,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TET1_HUMAN&rb=340&re=499&var=S457L	GRCh37	1	SNP	NA	NA	0	tCa/tTa	NM_030625.2
P-0000083-T01-IM3	80312	TET1	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	83	498	0	200	10	70404615	70404615	G	T	W710L	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,10,70404615,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TET1_HUMAN&rb=638&re=1347&var=W710L	GRCh37	1	SNP	NA	NA	0	tGg/tTg	NM_030625.2
P-0000423-T01-IM3	80312	TET1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	318	1026	0	529	10	70450623	70450623	C	G	I1821M	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,10,70450623,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TET1_HUMAN&rb=1580&re=2052&var=I1821M	GRCh37	1	SNP	NA	NA	0	atC/atG	NM_030625.2
P-0000423-T01-IM3	80312	TET1	MSK-IMPACT	MSK-IMPACT	NA	C	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	153	516	0	269	10	70450766	70450766	C	T	S1869L	Missense_Mutation	M	2.125	getma.org/?cm=var&var=hg19,10,70450766,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TET1_HUMAN&rb=1580&re=2052&var=S1869L	GRCh37	1	SNP	NA	NA	0	tCa/tTa	NM_030625.2
P-0000423-T01-IM3	80312	TET1	MSK-IMPACT	MSK-IMPACT	NA	C	T	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	103	297	0	221	10	70450886	70450886	C	T	P1909L	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,10,70450886,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TET1_HUMAN&rb=1580&re=2052&var=P1909L	GRCh37	1	SNP	NA	NA	0	cCt/cTt	NM_030625.2
P-0000423-T01-IM3	80312	TET1	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	153	445	0	269	10	70451087	70451087	C	G	S1976C	Missense_Mutation	L	1.245	getma.org/?cm=var&var=hg19,10,70451087,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TET1_HUMAN&rb=1580&re=2052&var=S1976C	GRCh37	1	SNP	NA	NA	0	tCt/tGt	NM_030625.2
P-0000083-T01-IM3	81608	FIP1L1	MSK-IMPACT	MSK-IMPACT	NA	C	A	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	75	393	0	106	4	54280879	54280879	C	A	P305T	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,4,54280879,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=FIP1_HUMAN&rb=198&re=397&var=P305T	GRCh37	1	SNP	NA	NA	0	Cct/Act	NM_030917.3
P-0000083-T01-IM3	84444	DOT1L	MSK-IMPACT	MSK-IMPACT	NA	C	G	NORMAL	C	C	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	220	753	0	330	19	2211757	2211757	C	G	F491L	Missense_Mutation	M	2.045	getma.org/?cm=var&var=hg19,19,2211757,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=DOT1L_HUMAN&rb=337&re=1737&var=F491L	GRCh37	1	SNP	NA	NA	0	ttC/ttG	NM_032482.2
DS-sig-003-P	171023	ASXL1	NA	NA	Somatic	C	T	DS-sig-003-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	91	307	0	142	20	31022403	31022403	C	T	H630Y	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,20,31022403,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ASXL1_HUMAN&rb=623&re=791&var=H630Y	GRCh37	1	SNP	NA	NA	0	Cac/Tac	NM_015338.5
P-0000083-T01-IM3	171023	ASXL1	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	597	503	0	193	20	31022985	31022985	G	C	E824Q	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,20,31022985,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ASXL1_HUMAN&rb=793&re=1071&var=E824Q	GRCh37	1	SNP	NA	NA	0.00001	Gag/Cag	NM_015338.5
P-0000083-T01-IM3	171023	ASXL1	MSK-IMPACT	MSK-IMPACT	NA	G	T	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	602	514	0	194	20	31022992	31022992	G	T	G826V	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,20,31022992,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ASXL1_HUMAN&rb=793&re=1071&var=G826V	GRCh37	1	SNP	NA	NA	0	gGa/gTa	NM_015338.5
DS-sig-038-P	196528	ARID2	NA	NA	Somatic	C	A	DS-sig-038-N	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	high	NA	NA	26	648	0	322	12	46246575	46246575	C	A	P1557T	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,12,46246575,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ARID2_HUMAN&rb=1384&re=1583&var=P1557T	GRCh37	1	SNP	NA	NA	0	Cca/Aca	NM_152641.2
P-0000083-T01-IM3	196528	ARID2	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	96	454	0	163	12	46287316	46287316	G	C	R1754P	Missense_Mutation	M	2.095	getma.org/?cm=var&var=hg19,12,46287316,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ARID2_HUMAN&rb=1584&re=1783&var=R1754P	GRCh37	1	SNP	NA	NA	0	cGa/cCa	NM_152641.2
P-0000083-T01-IM3	253260	RICTOR	MSK-IMPACT	MSK-IMPACT	NA	G	C	NORMAL	G	G	NA	NA	NA	NA	NA	NA	MSK-IMPACT	NA	NA	NA	NA	106	578	0	160	5	38959383	38959383	G	C	L698V	Missense_Mutation	N	0.525	getma.org/?cm=var&var=hg19,5,38959383,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RICTR_HUMAN&rb=6&re=1706&var=L698V	GRCh37	-1	SNP	NA	NA	0	Cta/Gta	NM_152756.3
OSCJM-PT01-166-T	1	A1BG	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT01-583-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	58864479	58864479	T	C	H52R	Missense_Mutation	N	-1.355	getma.org/?cm=var&var=hg19,19,58864479,T,C&fts=all	getma.org/pdb.php?prot=A1BG_HUMAN&from=28&to=112&var=H52R	getma.org/?cm=msa&ty=f&p=A1BG_HUMAN&rb=28&re=112&var=H52R	GRCh37	-1	SNP	rs893184	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.9009	cAc/cGc	NM_130786.3
OSCJM-PT48-530-T	2	A2M	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	9221405	9221405	C	G	V1433L	Missense_Mutation	L	1.785	getma.org/?cm=var&var=hg19,12,9221405,C,G&fts=all	getma.org/pdb.php?prot=A2MG_HUMAN&from=1376&to=1463&var=V1433L	getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=1376&re=1463&var=V1433L	GRCh37	-1	SNP	novel	unknown	0	Gtt/Ctt	NM_000014.4
OSCJM-PT48-530-T	2	A2M	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	9251213	9251213	G	A	S614L	Missense_Mutation	M	3.125	getma.org/?cm=var&var=hg19,12,9251213,G,A&fts=all	getma.org/pdb.php?prot=A2MG_HUMAN&from=608&to=737&var=S614L	getma.org/?cm=msa&ty=f&p=A2MG_HUMAN&rb=608&re=737&var=S614L	GRCh37	-1	SNP	novel	unknown	0.00006	tCg/tTg	NM_000014.4
OSCJM-PTD-578-T	13	AADAC	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	151532078	151532078	T	C	I43T	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,151532078,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=AAAD_HUMAN&rb=1&re=106&var=I43T	GRCh37	1	SNP	NA	NA	0	aTa/aCa	NM_001086.2
OSCJM-PT05-91-T	18	ABAT	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	8858658	8858658	G	A	A171T	Missense_Mutation	H	4.15	getma.org/?cm=var&var=hg19,16,8858658,G,A&fts=all	getma.org/pdb.php?prot=GABT_HUMAN&from=76&to=446&var=A171T	getma.org/?cm=msa&ty=f&p=GABT_HUMAN&rb=76&re=446&var=A171T	GRCh37	1	SNP	NA	NA	0	Gcc/Acc	NM_020686.5
OSCJM-PT32-489-T	23	ABCF1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	30546284	30546284	G	C	S140T	Missense_Mutation	L	1.655	getma.org/?cm=var&var=hg19,6,30546284,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABCF1_HUMAN&rb=36&re=480&var=S140T	GRCh37	1	SNP	NA	NA	0	aGt/aCt	NM_001025091.1
OSCJM-PT50-575-T	26	AOC1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	150555950	150555950	C	T	T557M	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,7,150555950,C,T&fts=all	getma.org/pdb.php?prot=ABP1_HUMAN&from=300&to=715&var=T557M	getma.org/?cm=msa&ty=f&p=ABP1_HUMAN&rb=300&re=715&var=T557M	GRCh37	1	SNP	novel	unknown	0.00004	aCg/aTg	NM_001091.3
OSCJM-PTD-578-T	29	ABR	hgsc.bcm.edu	SOLID	Somatic	-	TCA	OSCJM-PTD-439-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					17	914076	914077	NA	TCA	L709_S710insM	In_Frame_Ins	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	-1	INS	[Not Available]	[Not Available]	0	agt/aTGAgt	NM_021962.3,NM_001282149.1
OSCJM-PT33-288-T	29	ABR	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	962073	962073	C	T	R406H	Missense_Mutation	M	2.31	getma.org/?cm=var&var=hg19,17,962073,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABR_HUMAN&rb=302&re=459&var=R406H	GRCh37	-1	SNP	novel	.	0.00001	cGc/cAc	NM_021962.3,NM_001282149.1
OSCJM-PT38-234-T	31	ACACA	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT38-446-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	35549224	35549224	C	T	R1408H	Missense_Mutation	M	3.25	getma.org/?cm=var&var=hg19,17,35549224,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ACACA_HUMAN&rb=819&re=1569&var=R1371H	GRCh37	-1	SNP	novel	.	0	cGt/cAt	NM_198834.1,NM_198839.1
OSCJM-PT15-391-T	32	ACACB	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	109671621	109671621	G	T	R1403L	Missense_Mutation	N	0.215	getma.org/?cm=var&var=hg19,12,109671621,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ACACB_HUMAN&rb=962&re=1688&var=R1403L	GRCh37	1	SNP	NA	NA	0	cGc/cTc	NA
OSCJM-PT33-288-T	60	ACTB	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	5567507	5567507	C	T	E334K	Missense_Mutation	M	2.975	getma.org/?cm=var&var=hg19,7,5567507,C,T&fts=all	getma.org/pdb.php?prot=ACTB_HUMAN&from=2&to=375&var=E334K	getma.org/?cm=msa&ty=f&p=ACTB_HUMAN&rb=2&re=375&var=E334K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_001101.3
OSCJM-PTA-367-T	70	ACTC1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	35084363	35084363	C	T	D246N	Missense_Mutation	M	3.5	getma.org/?cm=var&var=hg19,15,35084363,C,T&fts=all	getma.org/pdb.php?prot=ACTC_HUMAN&from=4&to=377&var=D246N	getma.org/?cm=msa&ty=f&p=ACTC_HUMAN&rb=4&re=377&var=D246N	GRCh37	-1	SNP	NA	NA	0	Gat/Aat	NM_005159.4
OSCJM-PTD-578-T	91	ACVR1B	hgsc.bcm.edu	Cross	Somatic	T	G	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					12	52380658	52380658	T	G	F398C	Missense_Mutation	M	2.68	getma.org/?cm=var&var=hg19,12,52380658,T,G&fts=all	getma.org/pdb.php?prot=ACV1B_HUMAN&from=207&to=494&var=F398C	getma.org/?cm=msa&ty=f&p=ACV1B_HUMAN&rb=207&re=494&var=F398C	GRCh37	1	SNP	NA	NA	0	tTt/tGt	NM_020328.3,NM_004302.4
OSCJM-PT36-331-T	101	ADAM8	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	135085386	135085386	G	T	H344N	Missense_Mutation	H	3.52	getma.org/?cm=var&var=hg19,10,135085386,G,T&fts=all	getma.org/pdb.php?prot=ADAM8_HUMAN&from=200&to=400&var=H344N	getma.org/?cm=msa&ty=f&p=ADAM8_HUMAN&rb=200&re=400&var=H344N	GRCh37	-1	SNP	novel	.	0	Cat/Aat	NM_001109.4
OSCJM-PT10-325-T	107	ADCY1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	45717544	45717544	C	T	P561L	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,7,45717544,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ADCY1_HUMAN&rb=479&re=610&var=P561L	GRCh37	1	SNP	NA	NA	0	cCg/cTg	NM_021116.2
OSCJM-PT45-364-T	108	ADCY2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT45-246-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	7690874	7690874	T	C	L264P	Missense_Mutation	L	0.95	getma.org/?cm=var&var=hg19,5,7690874,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ADCY2_HUMAN&rb=136&re=280&var=L264P	GRCh37	1	SNP	novel	unknown	0	cTg/cCg	NM_020546.2
OSCJM-PTA-367-T	114	ADCY8	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	131880186	131880186	G	C	Q706E	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,8,131880186,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ADCY8_HUMAN&rb=617&re=712&var=Q706E	GRCh37	-1	SNP	NA	NA	0	Caa/Gaa	NM_001115.2
OSCJM-PT48-530-T	124	ADH1A	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	100200697	100200697	G	T	P330Q	Missense_Mutation	H	3.82	getma.org/?cm=var&var=hg19,4,100200697,G,T&fts=all	getma.org/pdb.php?prot=ADH1A_HUMAN&from=203&to=334&var=P330Q	getma.org/?cm=msa&ty=f&p=ADH1A_HUMAN&rb=203&re=334&var=P330Q	GRCh37	-1	SNP	novel	unknown	0	cCa/cAa	NM_000667.3
OSCJM-PT50-575-T	160	AP2A1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	50296272	50296272	C	T	L210F	Missense_Mutation	M	2.9	getma.org/?cm=var&var=hg19,19,50296272,C,T&fts=all	getma.org/pdb.php?prot=AP2A1_HUMAN&from=29&to=591&var=L210F	getma.org/?cm=msa&ty=f&p=AP2A1_HUMAN&rb=29&re=591&var=L210F	GRCh37	1	SNP	novel	unknown	0	Ctc/Ttc	NM_014203.2
OSCJM-PT18-392-T	165	AEBP1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	44146237	44146237	C	T	P116S	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,7,44146237,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=AEBP1_HUMAN&rb=100&re=160&var=P116S	GRCh37	1	SNP	novel	.	0	Ccg/Tcg	NM_001129.4
OSCJM-PT41-180-T	182	JAG1	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT41-594-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	10622480	10622480	T	A	D878V	Missense_Mutation	M	2.095	getma.org/?cm=var&var=hg19,20,10622480,T,A&fts=all	getma.org/pdb.php?prot=JAG1_HUMAN&from=817&to=1016&var=D878V	getma.org/?cm=msa&ty=f&p=JAG1_HUMAN&rb=817&re=1016&var=D878V	GRCh37	-1	SNP	novel	unknown	0	gAt/gTt	NM_000214.2
OSCJM-PT46-394-T	185	AGTR1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	148459124	148459124	G	A	C101Y	Missense_Mutation	H	4.585	getma.org/?cm=var&var=hg19,3,148459124,G,A&fts=all	getma.org/pdb.php?prot=AGTR1_HUMAN&from=45&to=302&var=C101Y	getma.org/?cm=msa&ty=f&p=AGTR1_HUMAN&rb=45&re=302&var=C101Y	GRCh37	1	SNP	novel	unknown	0	tGt/tAt	NM_000685.4
OSCJM-PT03-388-T	202	CRYBG1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	106967412	106967412	C	G	L369V	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,6,106967412,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=AIM1_HUMAN&rb=1&re=686&var=L369V	GRCh37	1	SNP	NA	NA	0	Ctt/Gtt	NM_001624.2
OSCJM-PT07-43-T	221	ALDH3B1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	67789293	67789293	G	C	MUTATED	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0.0008	NA	NM_001030010.1
OSCJM-PTC-139-T	222	ALDH3B2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	67433869	67433869	C	T	S52N	Missense_Mutation	N	-3.465	getma.org/?cm=var&var=hg19,11,67433869,C,T&fts=all	getma.org/pdb.php?prot=AL3B2_HUMAN&from=4&to=347&var=S52N	getma.org/?cm=msa&ty=f&p=AL3B2_HUMAN&rb=4&re=347&var=S52N	GRCh37	-1	SNP	rs1551888	byCluster;byFrequency;byHapMap	0.9052	aGt/aAt	NM_000695.3
OSCJM-PT49-537-T	224	ALDH3A2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	19575175	19575175	G	A	W450*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,19575175,G,A&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	tGg/tAg	NA
OSCJM-PTC-139-T	240	ALOX5	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	45920410	45920410	C	A	R222R	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	.	0	Cgg/Agg	NM_000698.3,NM_001256153.1
OSCJM-PT22-229-T	248	ALPI	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	233321655	233321655	C	T	T116M	Missense_Mutation	H	4.475	getma.org/?cm=var&var=hg19,2,233321655,C,T&fts=all	getma.org/pdb.php?prot=PPBI_HUMAN&from=52&to=487&var=T116M	getma.org/?cm=msa&ty=f&p=PPBI_HUMAN&rb=52&re=487&var=T116M	GRCh37	1	SNP	novel	.	0.00008	aCg/aTg	NM_001631.3
OSCJM-PT38-234-T	248	ALPI	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT38-446-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	233322722	233322722	G	A	G291R	Missense_Mutation	M	2.405	getma.org/?cm=var&var=hg19,2,233322722,G,A&fts=all	getma.org/pdb.php?prot=PPBI_HUMAN&from=52&to=487&var=G291R	getma.org/?cm=msa&ty=f&p=PPBI_HUMAN&rb=52&re=487&var=G291R	GRCh37	1	SNP	novel	.	0.00003	Gga/Aga	NM_001631.3
OSCJM-PT41-180-T	265	AMELX	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT41-594-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	11316762	11316762	A	G	Q80R	Missense_Mutation	M	2.71	getma.org/?cm=var&var=hg19,X,11316762,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=AMELX_HUMAN&rb=17&re=191&var=Q80R	GRCh37	1	SNP	novel	unknown	0	cAg/cGg	NM_001142.2
OSCJM-PTD-578-T	269	AMHR2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	53823690	53823690	C	T	R406*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,12,53823690,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_001164690.1,NM_020547.2
OSCJM-PT41-180-T	284	ANGPT1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	108509723	108509723	G	A	Q22*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,8,108509723,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Cag/Tag	NM_001199859.1,NM_001146.3
OSCJM-PT43-201-T	290	ANPEP	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	90349733	90349733	C	T	A28T	Missense_Mutation	M	2.695	getma.org/?cm=var&var=hg19,15,90349733,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=AMPN_HUMAN&rb=1&re=74&var=A28T	GRCh37	-1	SNP	novel	unknown	0.00001	Gca/Aca	NM_001150.2
OSCJM-PT40-169-T	324	APC	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT40-108-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	112173816	112173816	A	T	D842V	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,5,112173816,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=APC_HUMAN&rb=732&re=931&var=D842V	GRCh37	1	SNP	NA	NA	0	gAt/gTt	NM_000038.5
OSCJM-PT32-489-T	334	APLP2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	130005458	130005458	A	G	D562G	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,11,130005458,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=APLP2_HUMAN&rb=549&re=706&var=D562G	GRCh37	1	SNP	NA	NA	0	gAt/gGt	NM_001642.2
OSCJM-PT37-513-T	338	APOB	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	21228922	21228922	C	A	Q3606H	Missense_Mutation	M	2.38	getma.org/?cm=var&var=hg19,2,21228922,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=APOB_HUMAN&rb=3440&re=4087&var=Q3606H	GRCh37	-1	SNP	novel	.	0	caG/caT	NM_000384.2
OSCJM-PT43-201-T	338	APOB	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	21241978	21241978	G	T	L1003M	Missense_Mutation	L	1.575	getma.org/?cm=var&var=hg19,2,21241978,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=APOB_HUMAN&rb=958&re=1072&var=L1003M	GRCh37	-1	SNP	novel	unknown	0	Ctg/Atg	NM_000384.2
OSCJM-PT03-388-T	343	AQP8	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	25228682	25228682	A	G	N59S	Missense_Mutation	L	1.34	getma.org/?cm=var&var=hg19,16,25228682,A,G&fts=all	getma.org/pdb.php?prot=AQP8_HUMAN&from=29&to=245&var=N59S	getma.org/?cm=msa&ty=f&p=AQP8_HUMAN&rb=29&re=245&var=N59S	GRCh37	1	SNP	NA	NA	0	aAt/aGt	NM_001169.2
OSCJM-PT20-600-T	351	APP	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					21	27347535	27347535	G	C	Q436E	Missense_Mutation	M	2.835	getma.org/?cm=var&var=hg19,21,27347535,G,C&fts=all	getma.org/pdb.php?prot=A4_HUMAN&from=363&to=549&var=Q436E	getma.org/?cm=msa&ty=f&p=A4_HUMAN&rb=363&re=549&var=Q436E	GRCh37	-1	SNP	novel	.	0	Cag/Gag	NM_000484.3
OSCJM-PTA-367-T	354	KLK3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	51363301	51363301	C	T	A235V	Missense_Mutation	M	2.205	getma.org/?cm=var&var=hg19,19,51363301,C,T&fts=all	getma.org/pdb.php?prot=KLK3_HUMAN&from=25&to=253&var=A235V	getma.org/?cm=msa&ty=f&p=KLK3_HUMAN&rb=25&re=253&var=A235V	GRCh37	1	SNP	NA	NA	0	gCc/gTc	NM_001030047.1,NM_001648.2,NM_001030048.1
OSCJM-PT40-169-T	363	AQP6	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	50367087	50367087	C	T	S44L	Missense_Mutation	H	4.19	getma.org/?cm=var&var=hg19,12,50367087,C,T&fts=all	getma.org/pdb.php?prot=AQP6_HUMAN&from=17&to=231&var=S44L	getma.org/?cm=msa&ty=f&p=AQP6_HUMAN&rb=17&re=231&var=S44L	GRCh37	1	SNP	NA	NA	0	tCa/tTa	NM_001652.3
OSCJM-PT07-43-T	364	AQP7	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	33386400	33386400	A	G	X136_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0.0415	NA	NM_001170.1
OSCJM-PT46-394-T	364	AQP7	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	33385815	33385815	T	C	Q192R	Missense_Mutation	N	0.58	getma.org/?cm=var&var=hg19,9,33385815,T,C&fts=all	getma.org/pdb.php?prot=AQP73_HUMAN&from=27&to=272&var=Q192R	getma.org/?cm=msa&ty=f&p=AQP73_HUMAN&rb=27&re=272&var=Q192R	GRCh37	-1	SNP	rs62542745	byCluster	0.34	cAg/cGg	NM_001170.1
OSCJM-PT13-258-T	367	AR	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT13-257-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	66765167	66765167	A	T	Q60L	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,X,66765167,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ANDR_HUMAN&rb=6&re=75&var=Q60L	GRCh37	1	SNP	novel	unknown	0	cAg/cTg	NM_000044.3
OSCJM-PT38-234-T	368	ABCC6	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT38-446-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	16292032	16292032	G	A	A395V	Missense_Mutation	N	-1.355	getma.org/?cm=var&var=hg19,16,16292032,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MRP6_HUMAN&rb=311&re=580&var=A395V	GRCh37	-1	SNP	novel	.	0	gCt/gTt	NM_001171.5
OSCJM-PT07-43-T	378	ARF4	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	57569702	57569702	T	C	I61V	Missense_Mutation	L	0.81	getma.org/?cm=var&var=hg19,3,57569702,T,C&fts=all	getma.org/pdb.php?prot=ARF4_HUMAN&from=5&to=177&var=I61V	getma.org/?cm=msa&ty=f&p=ARF4_HUMAN&rb=5&re=177&var=I61V	GRCh37	-1	SNP	NA	NA	0	Att/Gtt	NM_001660.3
OSCJM-PT45-364-T	394	ARHGAP5	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	32561316	32561316	G	T	E481*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,14,32561316,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0.014	Gaa/Taa	NM_001030055.1
OSCJM-PT33-288-T	402	ARL2	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT33-571-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	64789194	64789194	T	C	V141A	Missense_Mutation	N	-1.275	getma.org/?cm=var&var=hg19,11,64789194,T,C&fts=all	getma.org/pdb.php?prot=ARL2_HUMAN&from=3&to=176&var=V141A	getma.org/?cm=msa&ty=f&p=ARL2_HUMAN&rb=3&re=176&var=V141A	GRCh37	1	SNP	rs664226	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.5117	gTc/gCc	NM_001667.3
OSCJM-PTD-578-T	419	ART3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	77033553	77033553	C	T	P351S	Missense_Mutation	L	1.385	getma.org/?cm=var&var=hg19,4,77033553,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NAR3_HUMAN&rb=281&re=387&var=P351S	GRCh37	1	SNP	NA	NA	0	Cct/Tct	NM_001130016.2
OSCJM-PT35-37-T	435	ASL	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	65547433	65547433	C	G	L96V	Missense_Mutation	M	2.715	getma.org/?cm=var&var=hg19,7,65547433,C,G&fts=all	getma.org/pdb.php?prot=ARLY_HUMAN&from=11&to=305&var=L96V	getma.org/?cm=msa&ty=f&p=ARLY_HUMAN&rb=11&re=305&var=L96V	GRCh37	1	SNP	novel	.	0	Ctg/Gtg	NM_000048.3
OSCJM-PT33-288-T	495	ATP4A	hgsc.bcm.edu	SOLID	Somatic	GA	-	OSCJM-PT33-571-N	GA	GA	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					19	36049926	36049927	GA	-	I408Tfs*4	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	aTC/a	NM_000704.2
OSCJM-PT20-600-T	518	ATP5MC3	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	176046108	176046108	G	A	A5V	Missense_Mutation	L	1.77	getma.org/?cm=var&var=hg19,2,176046108,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=AT5G3_HUMAN&rb=1&re=72&var=A5V	GRCh37	-1	SNP	novel	.	0	gCc/gTc	NM_001689.4,NM_001002258.4
OSCJM-PT50-575-T	540	ATP7B	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	52539150	52539150	G	A	A576V	Missense_Mutation	M	2.82	getma.org/?cm=var&var=hg19,13,52539150,G,A&fts=all	getma.org/pdb.php?prot=ATP7B_HUMAN&from=567&to=628&var=A576V	getma.org/?cm=msa&ty=f&p=ATP7B_HUMAN&rb=567&re=628&var=A576V	GRCh37	-1	SNP	novel	unknown	0.00003	gCg/gTg	NM_000053.3
OSCJM-PT37-513-T	545	ATR	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	142224039	142224039	C	T	G1713D	Missense_Mutation	M	3.025	getma.org/?cm=var&var=hg19,3,142224039,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATR_HUMAN&rb=1640&re=2185&var=G1713D	GRCh37	-1	SNP	novel	.	0	gGc/gAc	NM_001184.3
OSCJM-PT50-575-T	546	ATRX	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	76938647	76938647	G	A	R701C	Missense_Mutation	L	1.795	getma.org/?cm=var&var=hg19,X,76938647,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATRX_HUMAN&rb=601&re=800&var=R701C	GRCh37	-1	SNP	novel	unknown	0	Cgt/Tgt	NM_000489.3
OSCJM-PT50-575-T	547	KIF1A	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	241661294	241661294	C	A	R1457L	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,2,241661294,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=KIF1A_HUMAN&rb=1298&re=1497&var=R1457L	GRCh37	-1	SNP	novel	unknown	0	cGc/cTc	NM_004321.6
OSCJM-PT50-575-T	576	ADGRB2	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	32196433	32196433	G	T	P1450T	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,1,32196433,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=BAI2_HUMAN&rb=1399&re=1585&var=P1450T	GRCh37	-1	SNP	novel	unknown	0	Ccc/Acc	NM_001703.2
OSCJM-PT41-180-T	594	BCKDHB	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	81053464	81053464	C	G	F374L	Missense_Mutation	L	1.565	getma.org/?cm=var&var=hg19,6,81053464,C,G&fts=all	getma.org/pdb.php?prot=ODBB_HUMAN&from=261&to=379&var=F374L	getma.org/?cm=msa&ty=f&p=ODBB_HUMAN&rb=261&re=379&var=F374L	GRCh37	1	SNP	novel	unknown	0	ttC/ttG	NM_183050.2
OSCJM-PT12-478-T	602	BCL3	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					19	45254511	45254511	G	A	R95Q	Missense_Mutation	N	-0.345	getma.org/?cm=var&var=hg19,19,45254511,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=BCL3_HUMAN&rb=77&re=133&var=R95Q	GRCh37	1	SNP	novel	unknown	0	cGg/cAg	NM_005178.4
OSCJM-PT49-537-T	639	PRDM1	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT49-585-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	106554284	106554284	A	T	K604N	Missense_Mutation	M	2.79	getma.org/?cm=var&var=hg19,6,106554284,A,T&fts=all	getma.org/pdb.php?prot=PRDM1_HUMAN&from=589&to=614&var=K604N	getma.org/?cm=msa&ty=f&p=PRDM1_HUMAN&rb=569&re=634&var=K604N	GRCh37	1	SNP	novel	unknown	0	aaA/aaT	NM_001198.3
OSCJM-PT49-537-T	673	BRAF	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	140481403	140481403	C	G	G469R	Missense_Mutation	H	4.235	getma.org/?cm=var&var=hg19,7,140481403,C,G&fts=all	getma.org/pdb.php?prot=BRAF_HUMAN&from=457&to=714&var=G469R	getma.org/?cm=msa&ty=f&p=BRAF_HUMAN&rb=457&re=714&var=G469R	GRCh37	-1	SNP	novel	unknown	0	Gga/Cga	NM_004333.4
OSCJM-PT03-388-T	676	BRDT	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	92456786	92456786	C	A	S683Y	Missense_Mutation	L	1.245	getma.org/?cm=var&var=hg19,1,92456786,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=BRDT_HUMAN&rb=565&re=764&var=S683Y	GRCh37	1	SNP	novel	unknown	0	tCt/tAt	NM_001242805.1
OSCJM-PT48-530-T	729	C6	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	41160418	41160418	G	A	R504W	Missense_Mutation	M	3.11	getma.org/?cm=var&var=hg19,5,41160418,G,A&fts=all	getma.org/pdb.php?prot=CO6_HUMAN&from=291&to=514&var=R504W	getma.org/?cm=msa&ty=f&p=CO6_HUMAN&rb=291&re=514&var=R504W	GRCh37	-1	SNP	NA	NA	0.00007	Cgg/Tgg	NM_001115131.2
OSCJM-PT10-325-T	775	CACNA1C	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	2676738	2676738	C	T	T558M	Missense_Mutation	N	0.77	getma.org/?cm=var&var=hg19,12,2676738,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CAC1C_HUMAN&rb=558&re=752&var=T558M	GRCh37	1	SNP	novel	NA	0.0004	aCg/aTg	NM_199460.2,NM_001129827.1
OSCJM-PT11-385-T	776	CACNA1D	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT11-517-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	53842756	53842756	C	T	P1944S	Missense_Mutation	N	-0.205	getma.org/?cm=var&var=hg19,3,53842756,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CAC1D_HUMAN&rb=1833&re=2032&var=P1944S	GRCh37	1	SNP	NA	NA	0	Ccc/Tcc	NM_001128840.2
OSCJM-PT12-478-T	776	CACNA1D	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	53760918	53760918	G	A	E705K	Missense_Mutation	M	3.4	getma.org/?cm=var&var=hg19,3,53760918,G,A&fts=all	getma.org/pdb.php?prot=CAC1D_HUMAN&from=557&to=751&var=E705K	getma.org/?cm=msa&ty=f&p=CAC1D_HUMAN&rb=557&re=751&var=E705K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_001128840.2
OSCJM-PT03-388-T	790	CAD	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	27446896	27446896	A	G	T369T	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	.	0.00001	acA/acG	NM_004341.3
OSCJM-PT03-388-T	820	CAMP	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	48266798	48266798	G	T	A133S	Missense_Mutation	N	0.145	getma.org/?cm=var&var=hg19,3,48266798,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CAMP_HUMAN&rb=99&re=135&var=A133S	GRCh37	1	SNP	NA	NA	0	Gcc/Tcc	NA
OSCJM-PT22-229-T	824	CAPN2	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT22-321-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	223954078	223954078	T	C	I567T	Missense_Mutation	M	2.57	getma.org/?cm=var&var=hg19,1,223954078,T,C&fts=all	getma.org/pdb.php?prot=CAN2_HUMAN&from=544&to=604&var=I567T	getma.org/?cm=msa&ty=f&p=CAN2_HUMAN&rb=544&re=604&var=I567T	GRCh37	1	SNP	novel	.	0	aTc/aCc	NM_001748.4
OSCJM-PT32-489-T	840	CASP7	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	115481445	115481445	G	A	E95K	Missense_Mutation	L	0.82	getma.org/?cm=var&var=hg19,10,115481445,G,A&fts=all	getma.org/pdb.php?prot=CASP7_HUMAN&from=68&to=301&var=E95K	getma.org/?cm=msa&ty=f&p=CASP7_HUMAN&rb=68&re=301&var=E95K	GRCh37	1	SNP	NA	NA	0.00004	Gag/Aag	NM_033339.4
OSCJM-PT10-325-T	841	CASP8	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	202131240	202131240	G	A	G11R	Missense_Mutation	M	2.42	getma.org/?cm=var&var=hg19,2,202131240,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CASP8_HUMAN&rb=3&re=86&var=G11R	GRCh37	1	SNP	NA	NA	0	Ggg/Agg	NM_033355.3
OSCJM-PT01-166-T	841	CASP8	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	202131241	202131241	G	A	G11E	Missense_Mutation	L	1.525	getma.org/?cm=var&var=hg19,2,202131241,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CASP8_HUMAN&rb=3&re=86&var=G11E	GRCh37	1	SNP	NA	NA	0	gGg/gAg	NM_033355.3
OSCJM-PT03-388-T	841	CASP8	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	202139663	202139663	A	G	D216G	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,2,202139663,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CASP8_HUMAN&rb=184&re=233&var=D216G	GRCh37	1	SNP	novel	.	0	gAt/gGt	NM_033355.3
OSCJM-PT49-537-T	841	CASP8	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT49-585-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	202136280	202136280	A	T	E116V	Missense_Mutation	M	2.38	getma.org/?cm=var&var=hg19,2,202136280,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CASP8_HUMAN&rb=101&re=183&var=E116V	GRCh37	1	SNP	novel	unknown	0	gAa/gTa	NM_033355.3
OSCJM-PT12-478-T	846	CASR	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	122002533	122002533	G	C	X578_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_000388.3
OSCJM-PT33-288-T	862	RUNX1T1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	93017350	93017350	G	A	P245L	Missense_Mutation	M	2.57	getma.org/?cm=var&var=hg19,8,93017350,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTG8_HUMAN&rb=216&re=336&var=P245L	GRCh37	-1	SNP	novel	.	0	cCa/cTa	NM_001198628.1,NM_001198631.1,NM_001198629.1
OSCJM-PT03-388-T	867	CBL	hgsc.bcm.edu	Cross	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					11	119158592	119158592	G	C	E658Q	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,11,119158592,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CBL_HUMAN&rb=620&re=819&var=E658Q	GRCh37	1	SNP	novel	unknown	0	Gag/Cag	NM_005188.3
OSCJM-PT40-169-T	867	CBL	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT40-108-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	119158593	119158593	A	T	E658V	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,11,119158593,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CBL_HUMAN&rb=620&re=819&var=E658V	GRCh37	1	SNP	novel	unknown	0	gAg/gTg	NM_005188.3
OSCJM-PT05-91-T	908	CCT6A	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	56124067	56124067	G	C	E192Q	Missense_Mutation	M	2.065	getma.org/?cm=var&var=hg19,7,56124067,G,C&fts=all	getma.org/pdb.php?prot=TCPZ_HUMAN&from=30&to=525&var=E192Q	getma.org/?cm=msa&ty=f&p=TCPZ_HUMAN&rb=30&re=525&var=E192Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NM_001762.3
OSCJM-PT49-537-T	913	CD1E	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	158325293	158325293	G	T	G187C	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,1,158325293,G,T&fts=all	getma.org/pdb.php?prot=CD1E_HUMAN&from=1&to=200&var=G187C	getma.org/?cm=msa&ty=f&p=CD1E_HUMAN&rb=1&re=200&var=G187C	GRCh37	1	SNP	novel	unknown	0	Ggt/Tgt	NM_030893.3
OSCJM-PTA-367-T	924	CD7	hgsc.bcm.edu	Illumina	Somatic	-	T	OSCJM-PTA-308-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					17	80274159	80274160	-	T	A175Dfs*40	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	NA	NA	0.00005	gca/gAca	NM_006137.6
OSCJM-PT50-575-T	924	CD7	hgsc.bcm.edu	Illumina	Somatic	-	T	OSCJM-PT50-81-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					17	80274159	80274160	-	T	A175Dfs*40	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	NA	NA	0.00005	gca/gAca	NM_006137.6
OSCJM-PT03-388-T	941	CD80	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	119276519	119276519	G	C	F19L	Missense_Mutation	N	-1.1	getma.org/?cm=var&var=hg19,3,119276519,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CD80_HUMAN&rb=8&re=134&var=F19L	GRCh37	-1	SNP	NA	NA	0	ttC/ttG	NM_005191.3
OSCJM-PT45-364-T	946	SIGLEC6	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	52034476	52034476	C	T	R122Q	Missense_Mutation	M	2.205	getma.org/?cm=var&var=hg19,19,52034476,C,T&fts=all	getma.org/pdb.php?prot=SIGL6_HUMAN&from=30&to=142&var=R122Q	getma.org/?cm=msa&ty=f&p=SIGL6_HUMAN&rb=30&re=142&var=R122Q	GRCh37	-1	SNP	novel	unknown	0	cGg/cAg	NM_001245.5
OSCJM-PT32-489-T	947	CD34	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	208072364	208072364	G	A	P157L	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,1,208072364,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CD34_HUMAN&rb=1&re=189&var=P157L	GRCh37	-1	SNP	NA	NA	0	cCc/cTc	NM_001025109.1
OSCJM-PT13-258-T	950	SCARB2	hgsc.bcm.edu	Cross	Somatic	T	C	OSCJM-PT13-257-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					4	77097669	77097669	T	C	N209D	Missense_Mutation	N	0.33	getma.org/?cm=var&var=hg19,4,77097669,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SCRB2_HUMAN&rb=10&re=459&var=N209D	GRCh37	-1	SNP	novel	unknown	0	Aat/Gat	NM_005506.3
OSCJM-PT20-600-T	987	LRBA	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	151773593	151773593	G	A	A1090V	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,4,151773593,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=LRBA_HUMAN&rb=978&re=1177&var=A1090V	GRCh37	-1	SNP	novel	unknown	0	gCc/gTc	NM_006726.4
OSCJM-PT27-562-T	1001	CDH3	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT27-497-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	68712101	68712101	G	A	R104K	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,16,68712101,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CADH3_HUMAN&rb=49&re=111&var=R104K	GRCh37	1	SNP	novel	.	0	aGa/aAa	NM_001793.4
OSCJM-PT05-91-T	1007	CDH9	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT05-46-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	26915774	26915774	A	C	L163V	Missense_Mutation	N	-0.26	getma.org/?cm=var&var=hg19,5,26915774,A,C&fts=all	getma.org/pdb.php?prot=CADH9_HUMAN&from=160&to=268&var=L163V	getma.org/?cm=msa&ty=f&p=CADH9_HUMAN&rb=160&re=268&var=L163V	GRCh37	-1	SNP	NA	NA	0	Tta/Gta	NM_016279.3
OSCJM-PT03-388-T	1008	CDH10	hgsc.bcm.edu	Cross	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					5	24491701	24491701	G	T	C620*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,5,24491701,G,T&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	tgC/tgA	NM_006727.3
OSCJM-PT45-364-T	1008	CDH10	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	24487953	24487953	G	C	P729R	Missense_Mutation	H	4.025	getma.org/?cm=var&var=hg19,5,24487953,G,C&fts=all	getma.org/pdb.php?prot=CAD10_HUMAN&from=635&to=782&var=P729R	getma.org/?cm=msa&ty=f&p=CAD10_HUMAN&rb=635&re=782&var=P729R	GRCh37	-1	SNP	novel	unknown	0.00001	cCc/cGc	NM_006727.3
OSCJM-PTA-367-T	1014	CDH16	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	66950205	66950205	C	T	R86Q	Missense_Mutation	H	3.96	getma.org/?cm=var&var=hg19,16,66950205,C,T&fts=all	getma.org/pdb.php?prot=CAD16_HUMAN&from=25&to=126&var=R86Q	getma.org/?cm=msa&ty=f&p=CAD16_HUMAN&rb=25&re=126&var=R86Q	GRCh37	-1	SNP	NA	NA	0.00001	cGa/cAa	NM_001204744.1,NM_004062.3,NM_001204745.1
OSCJM-PT20-600-T	1016	CDH18	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	19612555	19612555	G	T	R267S	Missense_Mutation	N	0.235	getma.org/?cm=var&var=hg19,5,19612555,G,T&fts=all	getma.org/pdb.php?prot=CAD18_HUMAN&from=160&to=268&var=R267S	getma.org/?cm=msa&ty=f&p=CAD18_HUMAN&rb=160&re=268&var=R267S	GRCh37	-1	SNP	novel	.	0.00002	Cgc/Agc	NA
OSCJM-PT07-43-T	1040	CDS1	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	85566477	85566477	A	T	R419W	Missense_Mutation	M	2.56	getma.org/?cm=var&var=hg19,4,85566477,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CDS1_HUMAN&rb=418&re=461&var=R419W	GRCh37	1	SNP	NA	NA	0	Agg/Tgg	NM_001263.3
OSCJM-PT07-43-T	1041	CDSN	hgsc.bcm.edu	Illumina	Somatic	CTT	-	OSCJM-PT07-87-N	CTT	CTT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	31084943	31084945	CTT	-	S153del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	rs140128746	byCluster;by1000genomes	0.1844	ggAAGc/ggc	NM_001264.4
OSCJM-PT47-449-T	1041	CDSN	hgsc.bcm.edu	Illumina	Somatic	CTT	-	OSCJM-PT47-225-N	CTT	CTT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	31084943	31084945	CTT	-	S153del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	rs140128746	byCluster;by1000genomes	0.1844	ggAAGc/ggc	NM_001264.4
OSCJM-PT35-37-T	1048	CEACAM5	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	42213948	42213948	C	G	F138L	Missense_Mutation	L	0.93	getma.org/?cm=var&var=hg19,19,42213948,C,G&fts=all	getma.org/pdb.php?prot=CEAM5_HUMAN&from=2&to=140&var=F138L	getma.org/?cm=msa&ty=f&p=CEAM5_HUMAN&rb=2&re=140&var=F138L	GRCh37	1	SNP	novel	.	0	ttC/ttG	NM_004363.2
OSCJM-PT35-37-T	1063	CENPF	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT35-339-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	214828673	214828673	G	T	Q2804H	Missense_Mutation	M	2.135	getma.org/?cm=var&var=hg19,1,214828673,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CENPF_HUMAN&rb=2749&re=2948&var=Q2900H	GRCh37	1	SNP	novel	.	0	caG/caT	NM_016343.3
OSCJM-PT10-325-T	1068	CETN1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	580508	580508	C	T	R34W	Missense_Mutation	M	2.765	getma.org/?cm=var&var=hg19,18,580508,C,T&fts=all	getma.org/pdb.php?prot=CETN1_HUMAN&from=32&to=93&var=R34W	getma.org/?cm=msa&ty=f&p=CETN1_HUMAN&rb=32&re=93&var=R34W	GRCh37	1	SNP	NA	NA	0.00001	Cgg/Tgg	NM_004066.1
OSCJM-PT49-537-T	1103	CHAT	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	50857682	50857682	G	A	R504Q	Missense_Mutation	L	1.225	getma.org/?cm=var&var=hg19,10,50857682,G,A&fts=all	getma.org/pdb.php?prot=CLAT_HUMAN&from=130&to=720&var=R504Q	getma.org/?cm=msa&ty=f&p=CLAT_HUMAN&rb=130&re=720&var=R504Q	GRCh37	1	SNP	novel	unknown	0.00003	cGa/cAa	NM_020549.4,NM_001142929.1
OSCJM-PT41-180-T	1107	CHD3	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7794315	7794315	G	C	E148Q	Missense_Mutation	N	-0.405	getma.org/?cm=var&var=hg19,17,7794315,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CHD3_HUMAN&rb=147&re=201&var=E148Q	GRCh37	1	SNP	novel	unknown	0	Gag/Cag	NM_001005273.2
OSCJM-PTD-578-T	1118	CHIT1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	203186947	203186947	G	C	A359G	Missense_Mutation	M	2.765	getma.org/?cm=var&var=hg19,1,203186947,G,C&fts=all	getma.org/pdb.php?prot=CHIT1_HUMAN&from=22&to=363&var=A359G	getma.org/?cm=msa&ty=f&p=CHIT1_HUMAN&rb=22&re=363&var=A359G	GRCh37	-1	SNP	NA	NA	0	gCa/gGa	NM_003465.2,NM_001270509.1
OSCJM-PT41-180-T	1121	CHM	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	85211180	85211180	C	T	E382K	Missense_Mutation	M	3.405	getma.org/?cm=var&var=hg19,X,85211180,C,T&fts=all	getma.org/pdb.php?prot=RAE1_HUMAN&from=200&to=549&var=E382K	getma.org/?cm=msa&ty=f&p=RAE1_HUMAN&rb=200&re=549&var=E382K	GRCh37	-1	SNP	novel	unknown	0	Gaa/Aaa	NM_000390.2
OSCJM-PT32-489-T	1129	CHRM2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	136700385	136700385	A	G	N258S	Missense_Mutation	N	-0.345	getma.org/?cm=var&var=hg19,7,136700385,A,G&fts=all	getma.org/pdb.php?prot=ACM2_HUMAN&from=40&to=440&var=N258S	getma.org/?cm=msa&ty=f&p=ACM2_HUMAN&rb=40&re=440&var=N258S	GRCh37	1	SNP	rs142006633	byFrequency;by1000genomes	0.0013	aAc/aGc	NM_001006632.1
OSCJM-PT13-258-T	1130	LYST	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	235883977	235883977	C	A	D3182Y	Missense_Mutation	M	3.35	getma.org/?cm=var&var=hg19,1,235883977,C,A&fts=all	getma.org/pdb.php?prot=LYST_HUMAN&from=3132&to=3422&var=D3182Y	getma.org/?cm=msa&ty=f&p=LYST_HUMAN&rb=3132&re=3422&var=D3182Y	GRCh37	-1	SNP	novel	unknown	0	Gat/Tat	NM_000081.3
OSCJM-PT03-388-T	1132	CHRM4	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	46407023	46407023	G	C	A362G	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,11,46407023,G,C&fts=all	getma.org/pdb.php?prot=ACM4_HUMAN&from=49&to=453&var=A362G	getma.org/?cm=msa&ty=f&p=ACM4_HUMAN&rb=49&re=453&var=A362G	GRCh37	-1	SNP	novel	unknown	0	gCc/gGc	NM_000741.2
OSCJM-PT35-37-T	1132	CHRM4	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	46407804	46407804	C	T	A102T	Missense_Mutation	N	0.685	getma.org/?cm=var&var=hg19,11,46407804,C,T&fts=all	getma.org/pdb.php?prot=ACM4_HUMAN&from=49&to=453&var=A102T	getma.org/?cm=msa&ty=f&p=ACM4_HUMAN&rb=49&re=453&var=A102T	GRCh37	-1	SNP	novel	.	0.00001	Gcc/Acc	NM_000741.2
OSCJM-PT03-388-T	1183	CLCN4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	10176304	10176304	G	A	A355T	Missense_Mutation	L	1.625	getma.org/?cm=var&var=hg19,X,10176304,G,A&fts=all	getma.org/pdb.php?prot=CLCN4_HUMAN&from=162&to=565&var=A355T	getma.org/?cm=msa&ty=f&p=CLCN4_HUMAN&rb=162&re=565&var=A355T	GRCh37	1	SNP	NA	NA	0	Gcc/Acc	NM_001830.3,NM_001256944.1
OSCJM-PT35-37-T	1258	CNGB1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	57991249	57991249	C	G	Q290H	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,16,57991249,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNGB1_HUMAN&rb=201&re=400&var=Q290H	GRCh37	-1	SNP	novel	.	0	caG/caC	NM_001297.4
OSCJM-PT41-180-T	1260	CNGA2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	150908126	150908126	G	A	R99H	Missense_Mutation	L	0.98	getma.org/?cm=var&var=hg19,X,150908126,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNGA2_HUMAN&rb=42&re=176&var=R99H	GRCh37	1	SNP	novel	unknown	0	cGt/cAt	NM_005140.1
OSCJM-PT12-478-T	1261	CNGA3	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					2	99013489	99013489	C	T	A619V	Missense_Mutation	M	2.34	getma.org/?cm=var&var=hg19,2,99013489,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNGA3_HUMAN&rb=594&re=694&var=A619V	GRCh37	1	SNP	NA	NA	0.00002	gCg/gTg	NA
OSCJM-PT32-489-T	1293	COL6A3	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	238287849	238287849	G	C	L643V	Missense_Mutation	L	1.58	getma.org/?cm=var&var=hg19,2,238287849,G,C&fts=all	getma.org/pdb.php?prot=CO6A3_HUMAN&from=639&to=816&var=L643V	getma.org/?cm=msa&ty=f&p=CO6A3_HUMAN&rb=639&re=816&var=L643V	GRCh37	-1	SNP	NA	NA	0	Ctt/Gtt	NM_004369.3
OSCJM-PT33-288-T	1294	COL7A1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	48618069	48618069	C	T	R1666Q	Missense_Mutation	L	0.93	getma.org/?cm=var&var=hg19,3,48618069,C,T&fts=all	getma.org/pdb.php?prot=CO7A1_HUMAN&from=1549&to=1748&var=R1666Q	getma.org/?cm=msa&ty=f&p=CO7A1_HUMAN&rb=1549&re=1748&var=R1666Q	GRCh37	-1	SNP	novel	.	0	cGg/cAg	NM_000094.3
OSCJM-PT45-364-T	1296	COL8A2	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	36563294	36563294	G	T	A663D	Missense_Mutation	H	3.605	getma.org/?cm=var&var=hg19,1,36563294,G,T&fts=all	getma.org/pdb.php?prot=CO8A2_HUMAN&from=576&to=700&var=A663D	getma.org/?cm=msa&ty=f&p=CO8A2_HUMAN&rb=576&re=700&var=A663D	GRCh37	-1	SNP	novel	unknown	0	gCc/gAc	NM_005202.2
OSCJM-PT12-478-T	1301	COL11A1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	103405948	103405948	G	C	Q1107E	Missense_Mutation	N	0.72	getma.org/?cm=var&var=hg19,1,103405948,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=COBA1_HUMAN&rb=1101&re=1300&var=Q1107E	GRCh37	-1	SNP	NA	NA	0	Caa/Gaa	NM_001854.3
OSCJM-PT30-592-T	1301	COL11A1	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT30-587-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	103381238	103381238	A	G	G1255G	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	.	0	ggT/ggC	NM_001854.3
OSCJM-PT47-449-T	1301	COL11A1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT47-225-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	103440426	103440426	G	C	P923R	Missense_Mutation	M	1.96	getma.org/?cm=var&var=hg19,1,103440426,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=COBA1_HUMAN&rb=901&re=1100&var=P923R	GRCh37	-1	SNP	novel	unknown	0	cCt/cGt	NM_001854.3
OSCJM-PT19-481-T	1305	COL13A1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT19-3-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	71662505	71662505	G	A	G261D	Missense_Mutation	M	3.12	getma.org/?cm=var&var=hg19,10,71662505,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CODA1_HUMAN&rb=257&re=322&var=G261D	GRCh37	1	SNP	novel	.	0	gGc/gAc	NM_001130103.1
OSCJM-PTA-367-T	1307	COL16A1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	32118423	32118423	C	T	M1548I	Missense_Mutation	N	0.67	getma.org/?cm=var&var=hg19,1,32118423,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=COGA1_HUMAN&rb=1524&re=1581&var=M1548I	GRCh37	-1	SNP	NA	NA	0	atG/atA	NM_001856.3
OSCJM-PT48-530-T	1356	CP	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	148901300	148901300	C	T	R793H	Missense_Mutation	L	1.555	getma.org/?cm=var&var=hg19,3,148901300,C,T&fts=all	getma.org/pdb.php?prot=CERU_HUMAN&from=791&to=903&var=R793H	getma.org/?cm=msa&ty=f&p=CERU_HUMAN&rb=791&re=903&var=R793H	GRCh37	-1	SNP	novel	unknown	0.0068	cGt/cAt	NM_000096.3
OSCJM-PT11-385-T	1368	CPM	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT11-517-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	69264160	69264160	C	T	D151N	Missense_Mutation	M	3.195	getma.org/?cm=var&var=hg19,12,69264160,C,T&fts=all	getma.org/pdb.php?prot=CBPM_HUMAN&from=28&to=303&var=D151N	getma.org/?cm=msa&ty=f&p=CBPM_HUMAN&rb=28&re=303&var=D151N	GRCh37	-1	SNP	NA	NA	0	Gac/Aac	NA
OSCJM-PT32-489-T	1373	CPS1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	211473156	211473156	C	T	S755F	Missense_Mutation	M	2.095	getma.org/?cm=var&var=hg19,2,211473156,C,T&fts=all	getma.org/pdb.php?prot=CPSM_HUMAN&from=751&to=838&var=S755F	getma.org/?cm=msa&ty=f&p=CPSM_HUMAN&rb=751&re=838&var=S755F	GRCh37	1	SNP	NA	NA	0	tCc/tTc	NM_001875.4
OSCJM-PT07-43-T	1378	CR1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	207741172	207741172	T	C	I869T	Missense_Mutation	M	3.01	getma.org/?cm=var&var=hg19,1,207741172,T,C&fts=all	getma.org/pdb.php?prot=CR1_HUMAN&from=869&to=939&var=I869T	getma.org/?cm=msa&ty=f&p=CR1_HUMAN&rb=869&re=939&var=I869T	GRCh37	1	SNP	novel	unknown	0	aTc/aCc	NA
OSCJM-PT33-288-T	1382	CRABP2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	156670374	156670374	G	A	S109L	Missense_Mutation	N	0.61	getma.org/?cm=var&var=hg19,1,156670374,G,A&fts=all	getma.org/pdb.php?prot=RABP2_HUMAN&from=5&to=138&var=S109L	getma.org/?cm=msa&ty=f&p=RABP2_HUMAN&rb=5&re=138&var=S109L	GRCh37	-1	SNP	NA	NA	0	tCg/tTg	NA
OSCJM-PTC-139-T	1382	CRABP2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTC-295-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	156670737	156670737	G	A	R60C	Missense_Mutation	M	2.685	getma.org/?cm=var&var=hg19,1,156670737,G,A&fts=all	getma.org/pdb.php?prot=RABP2_HUMAN&from=5&to=138&var=R60C	getma.org/?cm=msa&ty=f&p=RABP2_HUMAN&rb=5&re=138&var=R60C	GRCh37	-1	SNP	NA	NA	0.00002	Cgc/Tgc	NA
OSCJM-PT35-37-T	1399	CRKL	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					22	21288386	21288386	C	G	Q211E	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,22,21288386,C,G&fts=all	getma.org/pdb.php?prot=CRKL_HUMAN&from=176&to=238&var=Q211E	getma.org/?cm=msa&ty=f&p=CRKL_HUMAN&rb=176&re=238&var=Q211E	GRCh37	1	SNP	NA	NA	0	Cag/Gag	NM_005207.3
OSCJM-PT48-530-T	1462	VCAN	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	82835880	82835880	C	T	T2353M	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,5,82835880,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CSPG2_HUMAN&rb=2217&re=2416&var=T2353M	GRCh37	1	SNP	NA	NA	0.0001	aCg/aTg	NM_004385.4
OSCJM-PT50-575-T	1468	SLC25A10	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	79682616	79682616	G	T	V108F	Missense_Mutation	N	0.535	getma.org/?cm=var&var=hg19,17,79682616,G,T&fts=all	getma.org/pdb.php?prot=DIC_HUMAN&from=95&to=192&var=V108F	getma.org/?cm=msa&ty=f&p=DIC_HUMAN&rb=95&re=192&var=V108F	GRCh37	1	SNP	novel	unknown	0	Gtc/Ttc	NM_012140.4,NM_001270953.1
OSCJM-PT32-489-T	1471	CST3	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	23614554	23614554	T	A	*147Lext*68	Nonstop_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	tAg/tTg	NM_000099.2
OSCJM-PT50-575-T	1486	CTBS	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	85020795	85020795	G	A	R349W	Missense_Mutation	M	2.545	getma.org/?cm=var&var=hg19,1,85020795,G,A&fts=all	getma.org/pdb.php?prot=DIAC_HUMAN&from=89&to=358&var=R349W	getma.org/?cm=msa&ty=f&p=DIAC_HUMAN&rb=89&re=358&var=R349W	GRCh37	-1	SNP	NOVEL	NA	0.0031	Cgg/Tgg	NM_004388.2
OSCJM-PT12-478-T	1500	CTNND1	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT12-103-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	57572173	57572173	T	G	L548R	Missense_Mutation	M	2.85	getma.org/?cm=var&var=hg19,11,57572173,T,G&fts=all	getma.org/pdb.php?prot=CTND1_HUMAN&from=482&to=681&var=L548R	getma.org/?cm=msa&ty=f&p=CTND1_HUMAN&rb=482&re=681&var=L548R	GRCh37	1	SNP	novel	unknown	0	cTt/cGt	NM_001085458.1
OSCJM-PT21-238-T	1506	CTRL	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT21-231-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	67964203	67964203	T	C	H173R	Missense_Mutation	N	-0.16	getma.org/?cm=var&var=hg19,16,67964203,T,C&fts=all	getma.org/pdb.php?prot=CTRL_HUMAN&from=34&to=257&var=H173R	getma.org/?cm=msa&ty=f&p=CTRL_HUMAN&rb=34&re=257&var=H173R	GRCh37	-1	SNP	rs1134760	byCluster;byFrequency;byHapMap	0.2197	cAt/cGt	NM_001907.2
OSCJM-PT41-180-T	1515	CTSV	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	99797114	99797114	C	G	E267Q	Missense_Mutation	M	2.635	getma.org/?cm=var&var=hg19,9,99797114,C,G&fts=all	getma.org/pdb.php?prot=CATL2_HUMAN&from=114&to=333&var=E267Q	getma.org/?cm=msa&ty=f&p=CATL2_HUMAN&rb=114&re=333&var=E267Q	GRCh37	-1	SNP	novel	unknown	0	Gaa/Caa	NM_001333.3
OSCJM-PTD-578-T	1539	CYLC2	hgsc.bcm.edu	Cross	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					9	105767470	105767470	A	G	K186R	Missense_Mutation	M	2.545	getma.org/?cm=var&var=hg19,9,105767470,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CYLC2_HUMAN&rb=101&re=259&var=K186R	GRCh37	1	SNP	NA	NA	0	aAg/aGg	NM_001340.3
OSCJM-PT35-37-T	1555	CYP2B6	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	41512884	41512884	C	T	R187*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,19,41512884,C,T&fts=all	NA	NA	GRCh37	1	SNP	novel	.	0.00004	Cga/Tga	NM_000767.4
OSCJM-PTA-367-T	1557	CYP2C19	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	96580294	96580294	G	T	L287F	Missense_Mutation	M	3.09	getma.org/?cm=var&var=hg19,10,96580294,G,T&fts=all	getma.org/pdb.php?prot=CP2CJ_HUMAN&from=30&to=487&var=L287F	getma.org/?cm=msa&ty=f&p=CP2CJ_HUMAN&rb=30&re=487&var=L287F	GRCh37	1	SNP	NA	NA	0	ttG/ttT	NM_000769.1
OSCJM-PT01-166-T	1562	CYP2C18	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	96447965	96447965	A	G	R139G	Missense_Mutation	L	1.83	getma.org/?cm=var&var=hg19,10,96447965,A,G&fts=all	getma.org/pdb.php?prot=CP2CI_HUMAN&from=30&to=487&var=R139G	getma.org/?cm=msa&ty=f&p=CP2CI_HUMAN&rb=30&re=487&var=R139G	GRCh37	1	SNP	novel	unknown	0	Agg/Ggg	NM_000772.2
OSCJM-PT46-394-T	1562	CYP2C18	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	96447965	96447965	A	G	R139G	Missense_Mutation	L	1.83	getma.org/?cm=var&var=hg19,10,96447965,A,G&fts=all	getma.org/pdb.php?prot=CP2CI_HUMAN&from=30&to=487&var=R139G	getma.org/?cm=msa&ty=f&p=CP2CI_HUMAN&rb=30&re=487&var=R139G	GRCh37	1	SNP	novel	unknown	0	Agg/Ggg	NM_000772.2
OSCJM-PT50-575-T	1573	CYP2J2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT50-81-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	60377953	60377953	T	C	K135R	Missense_Mutation	L	1.56	getma.org/?cm=var&var=hg19,1,60377953,T,C&fts=all	getma.org/pdb.php?prot=CP2J2_HUMAN&from=44&to=498&var=K135R	getma.org/?cm=msa&ty=f&p=CP2J2_HUMAN&rb=44&re=498&var=K135R	GRCh37	-1	SNP	novel	unknown	0	aAg/aGg	NM_000775.2
OSCJM-PTA-367-T	1576	CYP3A4	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	99364768	99364768	C	T	E262K	Missense_Mutation	N	-1.025	getma.org/?cm=var&var=hg19,7,99364768,C,T&fts=all	getma.org/pdb.php?prot=CP3A4_HUMAN&from=38&to=493&var=E262K	getma.org/?cm=msa&ty=f&p=CP3A4_HUMAN&rb=38&re=493&var=E262K	GRCh37	-1	SNP	rs199908125	NA	0.00008	Gaa/Aaa	NM_001202855.2,NM_017460.5
OSCJM-PT03-388-T	1591	CYP24A1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	52773795	52773795	T	A	N490Y	Missense_Mutation	L	1.83	getma.org/?cm=var&var=hg19,20,52773795,T,A&fts=all	getma.org/pdb.php?prot=CP24A_HUMAN&from=58&to=512&var=N490Y	getma.org/?cm=msa&ty=f&p=CP24A_HUMAN&rb=58&re=512&var=N490Y	GRCh37	-1	SNP	NA	NA	0	Aat/Tat	NM_000782.4
OSCJM-PT42-193-T	1595	CYP51A1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT42-279-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	91753166	91753166	G	A	R258C	Missense_Mutation	M	3.13	getma.org/?cm=var&var=hg19,7,91753166,G,A&fts=all	getma.org/pdb.php?prot=CP51A_HUMAN&from=61&to=496&var=R252C	getma.org/?cm=msa&ty=f&p=CP51A_HUMAN&rb=61&re=496&var=R252C	GRCh37	-1	SNP	novel	unknown	0.00005	Cgc/Tgc	NM_000786.3
OSCJM-PT05-91-T	1607	DGKB	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	14647080	14647080	G	A	S472F	Missense_Mutation	L	1.26	getma.org/?cm=var&var=hg19,7,14647080,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DGKB_HUMAN&rb=438&re=562&var=S472F	GRCh37	-1	SNP	novel	unknown	0	tCt/tTt	NM_004080.2
OSCJM-PTC-139-T	1608	DGKG	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PTC-295-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	185993374	185993374	A	G	M291T	Missense_Mutation	M	2.1	getma.org/?cm=var&var=hg19,3,185993374,A,G&fts=all	getma.org/pdb.php?prot=DGKG_HUMAN&from=272&to=324&var=M291T	getma.org/?cm=msa&ty=f&p=DGKG_HUMAN&rb=272&re=324&var=M291T	GRCh37	-1	SNP	NA	NA	0	aTg/aCg	NM_001080744.1,NM_001346.2,NM_001080745.1
OSCJM-PT22-229-T	1628	DBP	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	49136791	49136791	G	C	D224E	Missense_Mutation	M	2.61	getma.org/?cm=var&var=hg19,19,49136791,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DBP_HUMAN&rb=201&re=253&var=D224E	GRCh37	-1	SNP	novel	.	0	gaC/gaG	NM_001352.3
OSCJM-PT07-43-T	1630	DCC	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	50942511	50942511	A	C	M1050L	Missense_Mutation	L	1.525	getma.org/?cm=var&var=hg19,18,50942511,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DCC_HUMAN&rb=1035&re=1145&var=M1050L	GRCh37	1	SNP	NA	NA	0	Atg/Ctg	NM_005215.3
OSCJM-PT37-513-T	1630	DCC	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	50450107	50450107	T	A	L243Q	Missense_Mutation	L	1.83	getma.org/?cm=var&var=hg19,18,50450107,T,A&fts=all	getma.org/pdb.php?prot=DCC_HUMAN&from=240&to=327&var=L243Q	getma.org/?cm=msa&ty=f&p=DCC_HUMAN&rb=240&re=327&var=L243Q	GRCh37	1	SNP	novel	.	0	cTg/cAg	NM_005215.3
OSCJM-PT05-91-T	1636	ACE	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	61562680	61562680	G	A	E669K	Missense_Mutation	M	2.425	getma.org/?cm=var&var=hg19,17,61562680,G,A&fts=all	getma.org/pdb.php?prot=ACE_HUMAN&from=634&to=1228&var=E669K	getma.org/?cm=msa&ty=f&p=ACE_HUMAN&rb=634&re=1228&var=E669K	GRCh37	1	SNP	NA	NA	0.0002	Gag/Aag	NM_000789.3
OSCJM-PTB-347-T	1638	DCT	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	95131262	95131262	C	T	R83H	Missense_Mutation	H	3.68	getma.org/?cm=var&var=hg19,13,95131262,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TYRP2_HUMAN&rb=1&re=178&var=R83H	GRCh37	-1	SNP	NA	NA	0.0003	cGt/cAt	NM_001922.3
OSCJM-PT45-364-T	1655	DDX5	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	62496442	62496442	G	A	R482C	Missense_Mutation	L	1.815	getma.org/?cm=var&var=hg19,17,62496442,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DDX5_HUMAN&rb=437&re=497&var=R482C	GRCh37	-1	SNP	NA	NA	0	Cgt/Tgt	NM_004396.3
OSCJM-PT36-331-T	1660	DHX9	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	182827711	182827711	C	G	S279C	Missense_Mutation	L	1.765	getma.org/?cm=var&var=hg19,1,182827711,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=DHX9_HUMAN&rb=251&re=390&var=S279C	GRCh37	1	SNP	novel	.	0	tCt/tGt	NM_001357.4
OSCJM-PT41-180-T	1670	DEFA5	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	6913026	6913026	C	T	R71H	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	rs7839771	by2Hit2Allele;byHapMap	0.0092	cGt/cAt	NM_021010.1
OSCJM-PTD-578-T	1740	DLG2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	83874509	83874509	C	T	E102K	Missense_Mutation	L	1.105	getma.org/?cm=var&var=hg19,11,83874509,C,T&fts=all	getma.org/pdb.php?prot=DLG2_HUMAN&from=98&to=182&var=E102K	getma.org/?cm=msa&ty=f&p=DLG2_HUMAN&rb=98&re=182&var=E102K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_001364.3
OSCJM-PT43-201-T	1756	DMD	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	32383145	32383145	G	C	L1673V	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,X,32383145,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DMD_HUMAN&rb=1571&re=1676&var=L1673V	GRCh37	-1	SNP	novel	unknown	0	Ctt/Gtt	NM_004007.2,NM_000109.3,NM_004006.2,NM_004014.2,NM_004012.3,NM_0
OSCJM-PT32-489-T	1767	DNAH5	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	13928288	13928288	C	A	X65_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0.00001	NA	NM_001369.2
OSCJM-PT10-325-T	1767	DNAH5	hgsc.bcm.edu	Illumina	Somatic	ACCTCCA	-	OSCJM-PT10-70-N	ACCTCCA	ACCTCCA	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					5	13928252	13928258	ACCTCCA	-	G75Sfs*22	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	gtTGGAGGT/gt	NM_001369.2
OSCJM-PT46-394-T	1767	DNAH5	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	13729585	13729585	A	G	L3949P	Missense_Mutation	H	4.42	getma.org/?cm=var&var=hg19,5,13729585,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=DYH5_HUMAN&rb=3927&re=4622&var=L3949P	GRCh37	-1	SNP	novel	unknown	0	cTt/cCt	NM_001369.2
OSCJM-PT50-575-T	1767	DNAH5	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	13900426	13900426	G	C	I716M	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,5,13900426,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DYH5_HUMAN&rb=246&re=804&var=I716M	GRCh37	-1	SNP	novel	unknown	0	atC/atG	NM_001369.2
OSCJM-PT05-91-T	1768	DNAH6	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	84932821	84932821	C	T	R2893*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,84932821,C,T&fts=all	NA	NA	GRCh37	1	SNP	novel	NA	0	Cga/Tga	NA
OSCJM-PT14-353-T	1770	DNAH9	hgsc.bcm.edu	Cross	Somatic	C	A	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					17	11725774	11725774	C	A	P2957H	Missense_Mutation	H	4.975	getma.org/?cm=var&var=hg19,17,11725774,C,A&fts=all	getma.org/pdb.php?prot=DYH9_HUMAN&from=2788&to=3055&var=P2957H	getma.org/?cm=msa&ty=f&p=DYH9_HUMAN&rb=2788&re=3055&var=P2957H	GRCh37	1	SNP	novel	unknown	0	cCt/cAt	NM_001372.3
OSCJM-PT20-600-T	1770	DNAH9	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	11568199	11568199	C	A	T882N	Missense_Mutation	L	1.155	getma.org/?cm=var&var=hg19,17,11568199,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DYH9_HUMAN&rb=792&re=991&var=T882N	GRCh37	1	SNP	novel	.	0	aCt/aAt	NM_001372.3
OSCJM-PT12-478-T	1778	DYNC1H1	hgsc.bcm.edu	Cross	Somatic	T	C	OSCJM-PT12-103-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					14	102445724	102445724	T	C	L138P	Missense_Mutation	M	2.045	getma.org/?cm=var&var=hg19,14,102445724,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DYHC1_HUMAN&rb=1&re=200&var=L138P	GRCh37	1	SNP	novel	unknown	0	cTt/cCt	NM_001376.4
OSCJM-PT36-331-T	1785	DNM2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	10904485	10904485	G	A	R361Q	Missense_Mutation	M	2.54	getma.org/?cm=var&var=hg19,19,10904485,G,A&fts=all	getma.org/pdb.php?prot=DYN2_HUMAN&from=216&to=510&var=R361Q	getma.org/?cm=msa&ty=f&p=DYN2_HUMAN&rb=216&re=510&var=R361Q	GRCh37	1	SNP	novel	NA	0	cGa/cAa	NM_001005360.2,NM_001190716.1
OSCJM-PT04-447-T	1795	DOCK3	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT04-206-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	51198105	51198105	G	T	E337*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,3,51198105,G,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Gaa/Taa	NM_004947.4
OSCJM-PT13-258-T	1804	DPP6	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	154664393	154664393	C	T	L625F	Missense_Mutation	M	2.72	getma.org/?cm=var&var=hg19,7,154664393,C,T&fts=all	getma.org/pdb.php?prot=DPP6_HUMAN&from=562&to=640&var=L625F	getma.org/?cm=msa&ty=f&p=DPP6_HUMAN&rb=562&re=640&var=L625F	GRCh37	1	SNP	novel	unknown	0	Ctc/Ttc	NA
OSCJM-PT13-258-T	1807	DPYS	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	105393517	105393517	C	T	R490H	Missense_Mutation	M	2.7	getma.org/?cm=var&var=hg19,8,105393517,C,T&fts=all	getma.org/pdb.php?prot=DPYS_HUMAN&from=408&to=519&var=R490H	getma.org/?cm=msa&ty=f&p=DPYS_HUMAN&rb=408&re=519&var=R490H	GRCh37	-1	SNP	NA	NA	0.0002	cGt/cAt	NM_001385.2
OSCJM-PT37-513-T	1813	DRD2	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	113286211	113286211	G	T	R219S	Missense_Mutation	M	2.805	getma.org/?cm=var&var=hg19,11,113286211,G,T&fts=all	getma.org/pdb.php?prot=DRD2_HUMAN&from=51&to=426&var=R219S	getma.org/?cm=msa&ty=f&p=DRD2_HUMAN&rb=51&re=426&var=R219S	GRCh37	-1	SNP	novel	.	0	Cgc/Agc	NM_000795.3
OSCJM-PT32-489-T	1816	DRD5	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	9784899	9784899	A	C	N416H	Missense_Mutation	L	0.915	getma.org/?cm=var&var=hg19,4,9784899,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DRD5_HUMAN&rb=360&re=477&var=N416H	GRCh37	1	SNP	NA	NA	0	Aac/Cac	NM_000798.4
OSCJM-PTA-367-T	1822	ATN1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	7046142	7046142	C	A	S571Y	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,12,7046142,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATN1_HUMAN&rb=349&re=1190&var=S571Y	GRCh37	1	SNP	NA	NA	0	tCt/tAt	NM_001007026.1
OSCJM-PT20-600-T	1823	DSC1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	28720117	28720117	C	T	E470K	Missense_Mutation	M	2.16	getma.org/?cm=var&var=hg19,18,28720117,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DSC1_HUMAN&rb=355&re=471&var=E470K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_024421.2
OSCJM-PT30-592-T	1823	DSC1	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT30-587-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	28714058	28714058	C	A	D638Y	Missense_Mutation	M	2.34	getma.org/?cm=var&var=hg19,18,28714058,C,A&fts=all	getma.org/pdb.php?prot=DSC1_HUMAN&from=576&to=682&var=D638Y	getma.org/?cm=msa&ty=f&p=DSC1_HUMAN&rb=576&re=682&var=D638Y	GRCh37	-1	SNP	novel	.	0	Gat/Tat	NM_024421.2
OSCJM-PTB-347-T	1833	EPYC	hgsc.bcm.edu	Cross	Somatic	C	G	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					12	91358076	91358076	C	G	D276H	Missense_Mutation	M	2.485	getma.org/?cm=var&var=hg19,12,91358076,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=EPYC_HUMAN&rb=255&re=322&var=D276H	GRCh37	-1	SNP	novel	unknown	0	Gat/Cat	NM_004950.4
OSCJM-PT12-478-T	1874	E2F4	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	67226706	67226706	G	A	D60N	Missense_Mutation	H	4.205	getma.org/?cm=var&var=hg19,16,67226706,G,A&fts=all	getma.org/pdb.php?prot=E2F4_HUMAN&from=17&to=83&var=D60N	getma.org/?cm=msa&ty=f&p=E2F4_HUMAN&rb=17&re=83&var=D60N	GRCh37	1	SNP	novel	unknown	0	Gac/Aac	NM_001950.3
OSCJM-PT01-166-T	1953	MEGF6	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	3428684	3428684	C	T	E288K	Missense_Mutation	H	4.14	getma.org/?cm=var&var=hg19,1,3428684,C,T&fts=all	getma.org/pdb.php?prot=MEGF6_HUMAN&from=285&to=324&var=E288K	getma.org/?cm=msa&ty=f&p=MEGF6_HUMAN&rb=285&re=324&var=E288K	GRCh37	-1	SNP	NA	NA	0.00002	Gaa/Aaa	NM_001409.3
OSCJM-PT20-600-T	1956	EGFR	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	55219035	55219035	G	A	G203E	Missense_Mutation	M	2.5	getma.org/?cm=var&var=hg19,7,55219035,G,A&fts=all	getma.org/pdb.php?prot=EGFR_HUMAN&from=177&to=338&var=G203E	getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=177&re=338&var=G203E	GRCh37	1	SNP	novel	.	0	gGa/gAa	NM_005228.3
OSCJM-PT21-238-T	1956	EGFR	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT21-231-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	55229255	55229255	G	A	R521K	Missense_Mutation	N	0.405	getma.org/?cm=var&var=hg19,7,55229255,G,A&fts=all	getma.org/pdb.php?prot=EGFR_HUMAN&from=482&to=681&var=R521K	getma.org/?cm=msa&ty=f&p=EGFR_HUMAN&rb=482&re=681&var=R521K	GRCh37	1	SNP	rs2227983	byCluster;byFrequency	0.2902	aGg/aAg	NM_005228.3
OSCJM-PT37-513-T	1964	EIF1AX	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	20156686	20156686	C	G	R24T	Missense_Mutation	M	3.085	getma.org/?cm=var&var=hg19,X,20156686,C,G&fts=all	getma.org/pdb.php?prot=IF1AX_HUMAN&from=22&to=96&var=R24T	getma.org/?cm=msa&ty=f&p=IF1AX_HUMAN&rb=22&re=96&var=R24T	GRCh37	-1	SNP	novel	.	0	aGa/aCa	NM_001412.3
OSCJM-PT30-592-T	1969	EPHA2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT30-587-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	16458241	16458241	G	A	P817L	Missense_Mutation	H	3.59	getma.org/?cm=var&var=hg19,1,16458241,G,A&fts=all	getma.org/pdb.php?prot=EPHA2_HUMAN&from=613&to=871&var=P817L	getma.org/?cm=msa&ty=f&p=EPHA2_HUMAN&rb=613&re=871&var=P817L	GRCh37	-1	SNP	novel	.	0	cCc/cTc	NM_004431.3
OSCJM-PT01-166-T	1981	EIF4G1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	184039612	184039612	G	A	D414N	Missense_Mutation	L	1.245	getma.org/?cm=var&var=hg19,3,184039612,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=IF4G1_HUMAN&rb=401&re=600&var=D414N	GRCh37	1	SNP	NA	NA	0	Gac/Aac	NM_198241.2
OSCJM-PT45-364-T	1994	ELAVL1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	8032448	8032448	C	T	X246_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	NA	NA
OSCJM-PTD-578-T	2014	EMP3	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					19	48830823	48830823	G	A	D42N	Missense_Mutation	N	-1.59	getma.org/?cm=var&var=hg19,19,48830823,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=EMP3_HUMAN&rb=1&re=156&var=D42N	GRCh37	1	SNP	NA	NA	0.00002	Gac/Aac	NM_001425.2
OSCJM-PT01-166-T	2015	ADGRE1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	6921729	6921729	G	T	K542N	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,19,6921729,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=EMR1_HUMAN&rb=516&re=545&var=K542N	GRCh37	1	SNP	novel	unknown	0	aaG/aaT	NM_001974.4
OSCJM-PTD-578-T	2017	CTTN	hgsc.bcm.edu	Cross	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					11	70263146	70263146	A	G	Y162C	Missense_Mutation	M	2.455	getma.org/?cm=var&var=hg19,11,70263146,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SRC8_HUMAN&rb=157&re=193&var=Y162C	GRCh37	1	SNP	NA	NA	0	tAt/tGt	NM_005231.3
OSCJM-PT15-391-T	2028	ENPEP	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	111441522	111441522	G	C	G576A	Missense_Mutation	L	1.885	getma.org/?cm=var&var=hg19,4,111441522,G,C&fts=all	getma.org/pdb.php?prot=AMPE_HUMAN&from=483&to=615&var=G576A	getma.org/?cm=msa&ty=f&p=AMPE_HUMAN&rb=483&re=615&var=G576A	GRCh37	1	SNP	novel	unknown	0	gGt/gCt	NM_001977.3
OSCJM-PT33-288-T	2033	EP300	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	41564853	41564853	G	A	C1385Y	Missense_Mutation	H	3.56	getma.org/?cm=var&var=hg19,22,41564853,G,A&fts=all	getma.org/pdb.php?prot=EP300_HUMAN&from=1306&to=1612&var=C1385Y	getma.org/?cm=msa&ty=f&p=EP300_HUMAN&rb=1306&re=1612&var=C1385Y	GRCh37	1	SNP	NA	NA	0	tGc/tAc	NM_001429.3
OSCJM-PT20-600-T	2037	EPB41L2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	131211433	131211433	C	T	X554_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	.	0	NA	NM_001431.3
OSCJM-PT03-388-T	2041	EPHA1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	143096979	143096979	G	C	F200L	Missense_Mutation	M	2.6	getma.org/?cm=var&var=hg19,7,143096979,G,C&fts=all	getma.org/pdb.php?prot=EPHA1_HUMAN&from=27&to=204&var=F200L	getma.org/?cm=msa&ty=f&p=EPHA1_HUMAN&rb=27&re=204&var=F200L	GRCh37	-1	SNP	NA	NA	0	ttC/ttG	NM_005232.4
OSCJM-PT01-166-T	2045	EPHA7	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	93967961	93967961	C	A	G656W	Missense_Mutation	M	2.57	getma.org/?cm=var&var=hg19,6,93967961,C,A&fts=all	getma.org/pdb.php?prot=EPHA7_HUMAN&from=633&to=890&var=G656W	getma.org/?cm=msa&ty=f&p=EPHA7_HUMAN&rb=633&re=890&var=G656W	GRCh37	-1	SNP	NA	NA	0	Ggg/Tgg	NM_004440.3,NM_001288629.1
OSCJM-PT03-388-T	2045	EPHA7	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	94120660	94120660	C	G	D131H	Missense_Mutation	M	3.23	getma.org/?cm=var&var=hg19,6,94120660,C,G&fts=all	getma.org/pdb.php?prot=EPHA7_HUMAN&from=32&to=205&var=D131H	getma.org/?cm=msa&ty=f&p=EPHA7_HUMAN&rb=32&re=205&var=D131H	GRCh37	-1	SNP	NA	NA	0	Gac/Cac	NM_004440.3,NM_001288629.1
OSCJM-PT12-478-T	2045	EPHA7	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	93979237	93979237	C	G	D531H	Missense_Mutation	N	0.3	getma.org/?cm=var&var=hg19,6,93979237,C,G&fts=all	getma.org/pdb.php?prot=EPHA7_HUMAN&from=443&to=535&var=D531H	getma.org/?cm=msa&ty=f&p=EPHA7_HUMAN&rb=443&re=535&var=D531H	GRCh37	-1	SNP	NA	NA	0	Gat/Cat	NM_004440.3,NM_001288629.1
OSCJM-PTA-367-T	2046	EPHA8	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					1	22902848	22902848	G	A	E100K	Missense_Mutation	M	2.93	getma.org/?cm=var&var=hg19,1,22902848,G,A&fts=all	getma.org/pdb.php?prot=EPHA8_HUMAN&from=31&to=204&var=E100K	getma.org/?cm=msa&ty=f&p=EPHA8_HUMAN&rb=31&re=204&var=E100K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_020526.3
OSCJM-PT33-288-T	2047	EPHB1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	134968290	134968290	G	A	A935T	Missense_Mutation	H	3.505	getma.org/?cm=var&var=hg19,3,134968290,G,A&fts=all	getma.org/pdb.php?prot=EPHB1_HUMAN&from=909&to=973&var=A935T	getma.org/?cm=msa&ty=f&p=EPHB1_HUMAN&rb=909&re=973&var=A935T	GRCh37	1	SNP	novel	.	0	Gct/Act	NM_004441.4
OSCJM-PT05-91-T	2053	EPHX2	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT05-46-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	27378401	27378401	A	G	E316G	Missense_Mutation	M	2.03	getma.org/?cm=var&var=hg19,8,27378401,A,G&fts=all	getma.org/pdb.php?prot=HYES_HUMAN&from=286&to=540&var=E316G	getma.org/?cm=msa&ty=f&p=HYES_HUMAN&rb=286&re=540&var=E316G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_001979.5
OSCJM-PT10-325-T	2059	EPS8	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT10-70-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	15777171	15777171	A	G	F739L	Missense_Mutation	M	2.85	getma.org/?cm=var&var=hg19,12,15777171,A,G&fts=all	getma.org/pdb.php?prot=EPS8_HUMAN&from=583&to=782&var=F739L	getma.org/?cm=msa&ty=f&p=EPS8_HUMAN&rb=583&re=782&var=F739L	GRCh37	-1	SNP	NA	NA	0	Ttc/Ctc	NM_004447.5
OSCJM-PT25-327-T	2060	EPS15	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT25-74-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	51822435	51822435	C	A	Q876H	Missense_Mutation	M	2.125	getma.org/?cm=var&var=hg19,1,51822435,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=EPS15_HUMAN&rb=603&re=894&var=Q876H	GRCh37	-1	SNP	novel	.	0	caG/caT	NM_001981.2
OSCJM-PT35-37-T	2066	ERBB4	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	212589809	212589809	C	T	D245N	Missense_Mutation	L	1.885	getma.org/?cm=var&var=hg19,2,212589809,C,T&fts=all	getma.org/pdb.php?prot=ERBB4_HUMAN&from=176&to=335&var=D245N	getma.org/?cm=msa&ty=f&p=ERBB4_HUMAN&rb=176&re=335&var=D245N	GRCh37	-1	SNP	novel	.	0	Gac/Aac	NM_005235.2
OSCJM-PT35-37-T	2066	ERBB4	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT35-339-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	212288948	212288948	A	G	L933S	Missense_Mutation	M	2.87	getma.org/?cm=var&var=hg19,2,212288948,A,G&fts=all	getma.org/pdb.php?prot=ERBB4_HUMAN&from=718&to=974&var=L933S	getma.org/?cm=msa&ty=f&p=ERBB4_HUMAN&rb=718&re=974&var=L933S	GRCh37	-1	SNP	novel	.	0	tTa/tCa	NM_005235.2
OSCJM-PTC-139-T	2101	ESRRA	hgsc.bcm.edu	Illumina	Somatic	GGG	-	OSCJM-PTC-295-N	GGG	GGG	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					11	64083296	64083298	GGG	-	R377_A378delinsP	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.0026	cGGGcg/ccg	NA
OSCJM-PT12-478-T	2101	ESRRA	hgsc.bcm.edu	Illumina	Somatic	GGG	-	OSCJM-PT12-103-N	GGG	GGG	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					11	64083296	64083298	GGG	-	R377_A378delinsP	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.0026	cGGGcg/ccg	NA
OSCJM-PT36-331-T	2109	ETFB	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	51850290	51850290	G	A	T154M	Missense_Mutation	L	1.745	getma.org/?cm=var&var=hg19,19,51850290,G,A&fts=all	getma.org/pdb.php?prot=ETFB_HUMAN&from=26&to=190&var=T154M	getma.org/?cm=msa&ty=f&p=ETFB_HUMAN&rb=26&re=190&var=T154M	GRCh37	-1	SNP	rs1130426	bycluster;byfrequency;by1000genomes	0.4904	aCg/aTg	NM_001985.2
OSCJM-PT07-43-T	2115	ETV1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	13935510	13935510	T	C	N472S	Missense_Mutation	N	0.41	getma.org/?cm=var&var=hg19,7,13935510,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ETV1_HUMAN&rb=418&re=477&var=N472S	GRCh37	-1	SNP	NA	NA	0	aAc/aGc	NA
OSCJM-PT01-166-T	2120	ETV6	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	12022544	12022544	G	C	R217T	Missense_Mutation	L	1.61	getma.org/?cm=var&var=hg19,12,12022544,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ETV6_HUMAN&rb=125&re=324&var=R217T	GRCh37	1	SNP	NA	NA	0	aGa/aCa	NM_001987.4
OSCJM-PT03-388-T	2122	MECOM	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	168802723	168802723	C	A	A1044S	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,3,168802723,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=EVI1_HUMAN&rb=868&re=1049&var=A1044S	GRCh37	-1	SNP	NA	NA	0	Gct/Tct	NM_001105078.3
OSCJM-PT07-43-T	2125	EVPL	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	74017554	74017554	G	T	R336S	Missense_Mutation	M	1.95	getma.org/?cm=var&var=hg19,17,74017554,G,T&fts=all	getma.org/pdb.php?prot=EVPL_HUMAN&from=201&to=400&var=R336S	getma.org/?cm=msa&ty=f&p=EVPL_HUMAN&rb=201&re=400&var=R336S	GRCh37	-1	SNP	novel	unknown	0.191	Cgc/Agc	NM_001988.2
OSCJM-PTB-347-T	2150	F2RL1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTB-173-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	76129108	76129108	T	C	C226R	Missense_Mutation	H	3.74	getma.org/?cm=var&var=hg19,5,76129108,T,C&fts=all	getma.org/pdb.php?prot=PAR2_HUMAN&from=92&to=344&var=C226R	getma.org/?cm=msa&ty=f&p=PAR2_HUMAN&rb=92&re=344&var=C226R	GRCh37	1	SNP	novel	unknown	0	Tgt/Cgt	NM_005242.4
OSCJM-PT33-288-T	2153	F5	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	169510034	169510034	C	A	D1432Y	Missense_Mutation	M	2.485	getma.org/?cm=var&var=hg19,1,169510034,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=FA5_HUMAN&rb=1398&re=1470&var=D1432Y	GRCh37	-1	SNP	novel	.	0	Gac/Tac	NM_000130.4
OSCJM-PT03-388-T	2165	F13B	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	197031003	197031003	C	A	G121V	Missense_Mutation	H	3.565	getma.org/?cm=var&var=hg19,1,197031003,C,A&fts=all	getma.org/pdb.php?prot=F13B_HUMAN&from=91&to=146&var=G121V	getma.org/?cm=msa&ty=f&p=F13B_HUMAN&rb=91&re=146&var=G121V	GRCh37	-1	SNP	NA	NA	0	gGg/gTg	NM_001994.2
OSCJM-PT03-388-T	2175	FANCA	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	89836335	89836335	G	C	P805R	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,16,89836335,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=FANCA_HUMAN&rb=6&re=1108&var=P805R	GRCh37	-1	SNP	novel	unknown	0	cCt/cGt	NM_000135.2
OSCJM-PT33-288-T	2176	FANCC	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	97934381	97934381	C	T	A132T	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,9,97934381,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=FANCC_HUMAN&rb=1&re=558&var=A132T	GRCh37	-1	SNP	novel	.	0	Gct/Act	NM_000136.2
OSCJM-PT05-91-T	2187	FANCB	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	14877365	14877365	G	T	S348Y	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,X,14877365,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=FANCB_HUMAN&rb=192&re=393&var=S348Y	GRCh37	-1	SNP	novel	unknown	0	tCc/tAc	NM_152633.2
OSCJM-PTD-578-T	2195	FAT1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	187525003	187525003	G	C	Y3559*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,187525003,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	taC/taG	NM_005245.3
OSCJM-PT07-43-T	2195	FAT1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	187518254	187518254	C	T	G4147D	Missense_Mutation	L	1.86	getma.org/?cm=var&var=hg19,4,187518254,C,T&fts=all	getma.org/pdb.php?prot=FAT1_HUMAN&from=4127&to=4168&var=G4147D	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=4127&re=4168&var=G4147D	GRCh37	-1	SNP	NA	NA	0	gGc/gAc	NM_005245.3
OSCJM-PT32-489-T	2195	FAT1	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	187538253	187538253	A	C	L2994R	Missense_Mutation	H	4.225	getma.org/?cm=var&var=hg19,4,187538253,A,C&fts=all	getma.org/pdb.php?prot=FAT1_HUMAN&from=2923&to=3014&var=L2994R	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=2923&re=3014&var=L2994R	GRCh37	-1	SNP	NA	NA	0	cTt/cGt	NM_005245.3
OSCJM-PT22-229-T	2195	FAT1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	187549812	187549812	G	A	Q1477*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,187549812,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Caa/Taa	NM_005245.3
OSCJM-PT40-169-T	2195	FAT1	hgsc.bcm.edu	Illumina	Somatic	-	T	OSCJM-PT40-108-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					4	187629852	187629853	-	T	S377Kfs*2	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	NA	NA	0	agt/aAgt	NM_005245.3
OSCJM-PT03-388-T	2195	FAT1	hgsc.bcm.edu	Illumina	Somatic	AATC	-	OSCJM-PT03-66-N	AATC	AATC	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					4	187630348	187630351	AATC	-	D211Tfs*2	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	GATTac/ac	NM_005245.3
OSCJM-PT10-325-T	2195	FAT1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT10-70-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	187517692	187517692	A	G	X4334_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	NA	NM_005245.3
OSCJM-PT18-392-T	2195	FAT1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT18-570-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	187540586	187540586	T	A	D2385V	Missense_Mutation	H	4.565	getma.org/?cm=var&var=hg19,4,187540586,T,A&fts=all	getma.org/pdb.php?prot=FAT1_HUMAN&from=2284&to=2390&var=D2385V	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=2284&re=2390&var=D2385V	GRCh37	-1	SNP	novel	.	0	gAt/gTt	NM_005245.3
OSCJM-PT33-288-T	2195	FAT1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	187629360	187629360	G	C	S541*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,187629360,G,C&fts=all	NA	NA	GRCh37	-1	SNP	novel	.	0	tCa/tGa	NM_005245.3
OSCJM-PT46-394-T	2195	FAT1	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	187540788	187540788	T	A	I2318F	Missense_Mutation	M	2.115	getma.org/?cm=var&var=hg19,4,187540788,T,A&fts=all	getma.org/pdb.php?prot=FAT1_HUMAN&from=2288&to=2381&var=I2318F	getma.org/?cm=msa&ty=f&p=FAT1_HUMAN&rb=2288&re=2381&var=I2318F	GRCh37	-1	SNP	novel	unknown	0	Atc/Ttc	NM_005245.3
OSCJM-PT47-449-T	2195	FAT1	hgsc.bcm.edu	Illumina	Somatic	-	A	OSCJM-PT47-225-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					4	187628303	187628304	-	A	L893Ffs*4	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0	tta/ttTa	NM_005245.3
OSCJM-PT50-575-T	2195	FAT1	hgsc.bcm.edu	Illumina	Somatic	-	A	OSCJM-PT50-81-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					4	187540358	187540359	-	A	Y2461Lfs*4	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0	tac/tTac	NM_005245.3
OSCJM-PT25-327-T	2196	FAT2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT25-74-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	150947520	150947520	A	G	Y325H	Missense_Mutation	N	-1.06	getma.org/?cm=var&var=hg19,5,150947520,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=FAT2_HUMAN&rb=248&re=447&var=Y325H	GRCh37	-1	SNP	novel	.	0	Tac/Cac	NM_001447.2
OSCJM-PT20-600-T	2215	FCGR3B	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	161596067	161596067	T	A	K149*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,161596067,T,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	.	0	Aag/Tag	NM_001271035.1,NM_001244753.1
OSCJM-PT14-353-T	2237	FEN1	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					11	61562940	61562940	C	T	S36F	Missense_Mutation	M	2.89	getma.org/?cm=var&var=hg19,11,61562940,C,T&fts=all	getma.org/pdb.php?prot=FEN1_HUMAN&from=1&to=107&var=S36F	getma.org/?cm=msa&ty=f&p=FEN1_HUMAN&rb=1&re=107&var=S36F	GRCh37	1	SNP	novel	unknown	0	tCt/tTt	NM_004111.5
OSCJM-PT04-447-T	2244	FGB	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT04-206-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	155490819	155490819	C	T	S371L	Missense_Mutation	M	1.95	getma.org/?cm=var&var=hg19,4,155490819,C,T&fts=all	getma.org/pdb.php?prot=FIBB_HUMAN&from=237&to=487&var=S371L	getma.org/?cm=msa&ty=f&p=FIBB_HUMAN&rb=237&re=487&var=S371L	GRCh37	1	SNP	NA	NA	0	tCa/tTa	NM_005141.4
OSCJM-PT03-388-T	2262	GPC5	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	92051391	92051391	G	A	E31K	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,13,92051391,G,A&fts=all	getma.org/pdb.php?prot=GPC5_HUMAN&from=8&to=572&var=E31K	getma.org/?cm=msa&ty=f&p=GPC5_HUMAN&rb=8&re=572&var=E31K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_004466.4
OSCJM-PTA-367-T	2263	FGFR2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PTA-308-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	123274743	123274743	A	G	V392A	Missense_Mutation	M	2.135	getma.org/?cm=var&var=hg19,10,123274743,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=FGFR2_HUMAN&rb=360&re=480&var=V392A	GRCh37	-1	SNP	NA	NA	0	gTg/gCg	NM_000141.4
OSCJM-PT41-180-T	2273	FHL1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	135290019	135290019	C	A	Q134K	Missense_Mutation	N	-0.035	getma.org/?cm=var&var=hg19,X,135290019,C,A&fts=all	getma.org/pdb.php?prot=FHL1_HUMAN&from=101&to=158&var=Q134K	getma.org/?cm=msa&ty=f&p=FHL1_HUMAN&rb=101&re=158&var=Q134K	GRCh37	1	SNP	novel	unknown	0	Caa/Aaa	NA
OSCJM-PT01-166-T	2312	FLG	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	152281685	152281685	C	T	D1893N	Missense_Mutation	M	2.38	getma.org/?cm=var&var=hg19,1,152281685,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=FILA_HUMAN&rb=1876&re=1927&var=D1893N	GRCh37	-1	SNP	NA	NA	0.0001	Gac/Aac	NM_002016.1
OSCJM-PTA-367-T	2316	FLNA	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	153591106	153591106	C	A	G776V	Missense_Mutation	H	3.585	getma.org/?cm=var&var=hg19,X,153591106,C,A&fts=all	getma.org/pdb.php?prot=FLNA_HUMAN&from=766&to=863&var=G776V	getma.org/?cm=msa&ty=f&p=FLNA_HUMAN&rb=766&re=863&var=G776V	GRCh37	-1	SNP	NA	NA	0	gGc/gTc	NM_001110556.1
OSCJM-PT03-388-T	2316	FLNA	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	153591044	153591044	C	A	A797S	Missense_Mutation	N	-0.915	getma.org/?cm=var&var=hg19,X,153591044,C,A&fts=all	getma.org/pdb.php?prot=FLNA_HUMAN&from=766&to=863&var=A797S	getma.org/?cm=msa&ty=f&p=FLNA_HUMAN&rb=766&re=863&var=A797S	GRCh37	-1	SNP	novel	unknown	0	Gcc/Tcc	NM_001110556.1
OSCJM-PT30-592-T	2334	AFF2	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT30-587-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	148059485	148059485	T	C	F1143L	Missense_Mutation	M	2.545	getma.org/?cm=var&var=hg19,X,148059485,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=AFF2_HUMAN&rb=18&re=1309&var=F1143L	GRCh37	1	SNP	novel	.	0	Ttt/Ctt	NM_002025.3,NM_001169123.1
OSCJM-PT07-43-T	2335	FN1	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					2	216298182	216298182	C	T	E94K	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,2,216298182,C,T&fts=all	getma.org/pdb.php?prot=FINC_HUMAN&from=88&to=96&var=E94K	getma.org/?cm=msa&ty=f&p=FINC_HUMAN&rb=58&re=126&var=E94K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NA
OSCJM-PT20-600-T	2335	FN1	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT20-506-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	216243857	216243857	A	C	L1782R	Missense_Mutation	H	3.875	getma.org/?cm=var&var=hg19,2,216243857,A,C&fts=all	getma.org/pdb.php?prot=FINC_HUMAN&from=1723&to=1804&var=L1782R	getma.org/?cm=msa&ty=f&p=FINC_HUMAN&rb=1723&re=1804&var=L1782R	GRCh37	-1	SNP	novel	.	0	cTt/cGt	NA
OSCJM-PT10-325-T	2353	FOS	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	75748096	75748096	C	A	S371*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,14,75748096,C,A&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	tCg/tAg	NM_005252.3
OSCJM-PT15-391-T	2358	FPR2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	52272071	52272071	C	T	R54W	Missense_Mutation	H	3.54	getma.org/?cm=var&var=hg19,19,52272071,C,T&fts=all	getma.org/pdb.php?prot=FPR2_HUMAN&from=43&to=302&var=R54W	getma.org/?cm=msa&ty=f&p=FPR2_HUMAN&rb=43&re=302&var=R54W	GRCh37	1	SNP	novel	unknown	0.00005	Cgg/Tgg	NM_001005738.1
OSCJM-PT27-562-T	2475	MTOR	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT27-497-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	11169361	11169361	C	A	R2505L	Missense_Mutation	M	2.435	getma.org/?cm=var&var=hg19,1,11169361,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTOR_HUMAN&rb=2182&re=2516&var=R2505L	GRCh37	-1	SNP	novel	.	0	cGa/cTa	NM_004958.3
OSCJM-PTA-367-T	2532	ACKR1	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					1	159175312	159175312	C	T	S28F	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,1,159175312,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DUFFY_HUMAN&rb=1&re=44&var=S28F	GRCh37	1	SNP	NA	NA	0	tCt/tTt	NM_002036.3
OSCJM-PT36-331-T	2538	G6PC	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	41063022	41063022	G	C	S218T	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,17,41063022,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=G6PC_HUMAN&rb=205&re=357&var=S218T	GRCh37	1	SNP	novel	.	0	aGc/aCc	NM_000151.3
OSCJM-PTB-347-T	2548	GAA	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	78079669	78079669	G	A	R223H	Missense_Mutation	M	2.27	getma.org/?cm=var&var=hg19,17,78079669,G,A&fts=all	getma.org/pdb.php?prot=LYAG_HUMAN&from=131&to=253&var=R223H	getma.org/?cm=msa&ty=f&p=LYAG_HUMAN&rb=131&re=253&var=R223H	GRCh37	1	SNP	rs1042395	byCluster;byFrequency	0.6717	cGc/cAc	NM_000152.3
OSCJM-PT10-325-T	2549	GAB1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	144380628	144380628	G	A	R559Q	Missense_Mutation	M	2.39	getma.org/?cm=var&var=hg19,4,144380628,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GAB1_HUMAN&rb=129&re=692&var=R559Q	GRCh37	1	SNP	novel	.	0	cGa/cAa	NM_002039.3
OSCJM-PT32-489-T	2556	GABRA3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	151336735	151336735	C	T	E482K	Missense_Mutation	L	0.85	getma.org/?cm=var&var=hg19,X,151336735,C,T&fts=all	getma.org/pdb.php?prot=GBRA3_HUMAN&from=476&to=492&var=E482K	getma.org/?cm=msa&ty=f&p=GBRA3_HUMAN&rb=446&re=492&var=E482K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_000808.3
OSCJM-PT37-513-T	2570	GABRR2	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	89978803	89978803	A	T	F147I	Missense_Mutation	L	1.83	getma.org/?cm=var&var=hg19,6,89978803,A,T&fts=all	getma.org/pdb.php?prot=GBRR2_HUMAN&from=80&to=286&var=F172I	getma.org/?cm=msa&ty=f&p=GBRR2_HUMAN&rb=80&re=286&var=F172I	GRCh37	-1	SNP	novel	.	0	Ttc/Atc	NM_002043.3
OSCJM-PT01-166-T	2588	GALNS	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT01-583-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	88907419	88907419	T	G	S135R	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,16,88907419,T,G&fts=all	getma.org/pdb.php?prot=GALNS_HUMAN&from=31&to=453&var=S135R	getma.org/?cm=msa&ty=f&p=GALNS_HUMAN&rb=31&re=453&var=S135R	GRCh37	-1	SNP	novel	unknown	0	Agc/Cgc	NM_000512.4
OSCJM-PT18-392-T	2591	GALNT3	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT18-570-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	166611455	166611455	A	G	V504A	Missense_Mutation	L	1.895	getma.org/?cm=var&var=hg19,2,166611455,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=GALT3_HUMAN&rb=504&re=630&var=V504A	GRCh37	-1	SNP	novel	.	0	gTt/gCt	NM_004482.3
OSCJM-PT15-391-T	2638	GC	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	72620717	72620717	G	C	S381*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,72620717,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tCa/tGa	NM_001204306.1,NM_000583.3
OSCJM-PT04-447-T	2648	KAT2A	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT04-206-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	40266057	40266057	C	T	E761K	Missense_Mutation	M	2.205	getma.org/?cm=var&var=hg19,17,40266057,C,T&fts=all	getma.org/pdb.php?prot=KAT2A_HUMAN&from=737&to=820&var=E761K	getma.org/?cm=msa&ty=f&p=KAT2A_HUMAN&rb=737&re=820&var=E761K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_021078.2
OSCJM-PT36-331-T	2658	GDF2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	48413756	48413756	G	A	T371M	Missense_Mutation	H	3.88	getma.org/?cm=var&var=hg19,10,48413756,G,A&fts=all	getma.org/pdb.php?prot=GDF2_HUMAN&from=324&to=429&var=T371M	getma.org/?cm=msa&ty=f&p=GDF2_HUMAN&rb=324&re=429&var=T371M	GRCh37	-1	SNP	novel	.	0.0001	aCg/aTg	NM_016204.1
OSCJM-PT37-513-T	2658	GDF2	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	48413837	48413837	C	A	W344L	Missense_Mutation	H	3.895	getma.org/?cm=var&var=hg19,10,48413837,C,A&fts=all	getma.org/pdb.php?prot=GDF2_HUMAN&from=324&to=429&var=W344L	getma.org/?cm=msa&ty=f&p=GDF2_HUMAN&rb=324&re=429&var=W344L	GRCh37	-1	SNP	novel	.	0	tGg/tTg	NM_016204.1
OSCJM-PT48-530-T	2661	GDF9	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	132197403	132197403	G	A	P415S	Missense_Mutation	M	2.51	getma.org/?cm=var&var=hg19,5,132197403,G,A&fts=all	getma.org/pdb.php?prot=GDF9_HUMAN&from=350&to=454&var=P415S	getma.org/?cm=msa&ty=f&p=GDF9_HUMAN&rb=350&re=454&var=P415S	GRCh37	-1	SNP	novel	unknown	0	Cca/Tca	NM_001288828.1,NM_001288825.1
OSCJM-PT37-513-T	2668	GDNF	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	37815963	37815963	A	T	F142L	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,5,37815963,A,T&fts=all	getma.org/pdb.php?prot=GDNF_HUMAN&from=115&to=211&var=F142L	getma.org/?cm=msa&ty=f&p=GDNF_HUMAN&rb=115&re=211&var=F142L	GRCh37	-1	SNP	novel	.	0	ttT/ttA	NM_000514.3
OSCJM-PT33-288-T	2671	GFER	hgsc.bcm.edu	SOLID	weird	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	2035868	2035868	C	T	L153L	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	rs1046502	bycluster;byfrequency;by1000genomes	0.1577	Ctg/Ttg	NM_005262.2
OSCJM-PT50-575-T	2674	GFRA1	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	118030570	118030570	C	G	S33T	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,10,118030570,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=GFRA1_HUMAN&rb=29&re=111&var=S33T	GRCh37	-1	SNP	novel	unknown	0	aGt/aCt	NM_005264.4
OSCJM-PT03-388-T	2770	GNAI1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	79842176	79842176	G	C	E289Q	Missense_Mutation	M	2.73	getma.org/?cm=var&var=hg19,7,79842176,G,C&fts=all	getma.org/pdb.php?prot=GNAI1_HUMAN&from=3&to=354&var=E289Q	getma.org/?cm=msa&ty=f&p=GNAI1_HUMAN&rb=3&re=354&var=E289Q	GRCh37	1	SNP	NA	NA	0	Gaa/Caa	NM_002069.5
OSCJM-PT11-385-T	2784	GNB3	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT11-517-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	6954826	6954826	A	G	Q259R	Missense_Mutation	N	0.135	getma.org/?cm=var&var=hg19,12,6954826,A,G&fts=all	getma.org/pdb.php?prot=GBB3_HUMAN&from=255&to=264&var=Q259R	getma.org/?cm=msa&ty=f&p=GBB3_HUMAN&rb=225&re=294&var=Q259R	GRCh37	1	SNP	NA	NA	0	cAg/cGg	NM_002075.2
OSCJM-PT05-91-T	2804	GOLGB1	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	121415104	121415104	C	G	E1417D	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,3,121415104,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=GOGB1_HUMAN&rb=1356&re=2374&var=E1417D	GRCh37	-1	SNP	novel	unknown	0	gaG/gaC	NM_001256487.1,NM_004487.4,NM_001256488.1
OSCJM-PT18-392-T	2817	GPC1	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT18-570-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	241405528	241405528	A	G	S500G	Missense_Mutation	N	-1.145	getma.org/?cm=var&var=hg19,2,241405528,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=GPC1_HUMAN&rb=8&re=557&var=S500G	GRCh37	1	SNP	rs2228331	byCluster;byFrequency;byHapMap	0.6593	Agc/Ggc	NM_002081.2
OSCJM-PT12-478-T	2835	GPR12	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	27333013	27333013	C	T	G318S	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,13,27333013,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=GPR12_HUMAN&rb=302&re=334&var=G318S	GRCh37	-1	SNP	novel	NA	0	Ggc/Agc	NA
OSCJM-PT01-166-T	2843	GPR20	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	142367698	142367698	C	T	R109H	Missense_Mutation	M	2.65	getma.org/?cm=var&var=hg19,8,142367698,C,T&fts=all	getma.org/pdb.php?prot=GPR20_HUMAN&from=70&to=297&var=R109H	getma.org/?cm=msa&ty=f&p=GPR20_HUMAN&rb=70&re=297&var=R109H	GRCh37	-1	SNP	NA	NA	0	cGc/cAc	NM_005293.2
OSCJM-PT18-392-T	2854	GPR32	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	51274719	51274719	G	A	E288K	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,19,51274719,G,A&fts=all	getma.org/pdb.php?prot=GPR32_HUMAN&from=60&to=316&var=E288K	getma.org/?cm=msa&ty=f&p=GPR32_HUMAN&rb=60&re=316&var=E288K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_001506.2
OSCJM-PT46-394-T	2869	GRK5	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	121203166	121203166	G	A	E390K	Missense_Mutation	N	0.525	getma.org/?cm=var&var=hg19,10,121203166,G,A&fts=all	getma.org/pdb.php?prot=GRK5_HUMAN&from=186&to=448&var=E390K	getma.org/?cm=msa&ty=f&p=GRK5_HUMAN&rb=186&re=448&var=E390K	GRCh37	1	SNP	novel	unknown	0	Gag/Aag	NM_005308.2
OSCJM-PT49-537-T	2899	GRIK3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	37267622	37267622	C	T	D864N	Missense_Mutation	N	0.14	getma.org/?cm=var&var=hg19,1,37267622,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=GRIK3_HUMAN&rb=833&re=919&var=D864N	GRCh37	-1	SNP	NA	NA	0	Gat/Aat	NM_000831.3
OSCJM-PT45-364-T	2899	GRIK3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	37324732	37324732	G	A	R361C	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,1,37324732,G,A&fts=all	getma.org/pdb.php?prot=GRIK3_HUMAN&from=55&to=398&var=R361C	getma.org/?cm=msa&ty=f&p=GRIK3_HUMAN&rb=55&re=398&var=R361C	GRCh37	-1	SNP	novel	unknown	0.00001	Cgc/Tgc	NM_000831.3
OSCJM-PTD-578-T	2911	GRM1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	146720766	146720766	A	G	K864R	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,6,146720766,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=GRM1_HUMAN&rb=839&re=973&var=K864R	GRCh37	1	SNP	NA	NA	0	aAg/aGg	NM_001278067.1,NM_001278064.1
OSCJM-PT20-600-T	2913	GRM3	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	86468866	86468866	G	A	R679K	Missense_Mutation	L	1.105	getma.org/?cm=var&var=hg19,7,86468866,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GRM3_HUMAN&rb=586&re=826&var=R679K	GRCh37	1	SNP	novel	.	0	aGg/aAg	NM_000840.2
OSCJM-PTA-367-T	2914	GRM4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	34101144	34101144	G	A	R44C	Missense_Mutation	M	2.06	getma.org/?cm=var&var=hg19,6,34101144,G,A&fts=all	getma.org/pdb.php?prot=GRM4_HUMAN&from=1&to=76&var=R44C	getma.org/?cm=msa&ty=f&p=GRM4_HUMAN&rb=1&re=76&var=R44C	GRCh37	-1	SNP	NA	NA	0	Cgc/Tgc	NM_000841.2,NM_001256811.1
OSCJM-PT49-537-T	2926	GRSF1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	71698979	71698979	G	A	R176C	Missense_Mutation	M	2.295	getma.org/?cm=var&var=hg19,4,71698979,G,A&fts=all	getma.org/pdb.php?prot=GRSF1_HUMAN&from=152&to=223&var=R176C	getma.org/?cm=msa&ty=f&p=GRSF1_HUMAN&rb=152&re=223&var=R176C	GRCh37	-1	SNP	novel	unknown	0.00002	Cgc/Tgc	NM_002092.3
OSCJM-PTA-367-T	2934	GSN	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	124064328	124064328	C	A	L78M	Missense_Mutation	M	2.07	getma.org/?cm=var&var=hg19,9,124064328,C,A&fts=all	getma.org/pdb.php?prot=GELS_HUMAN&from=75&to=158&var=L78M	getma.org/?cm=msa&ty=f&p=GELS_HUMAN&rb=75&re=158&var=L78M	GRCh37	1	SNP	NA	NA	0.00001	Ctg/Atg	NM_000177.4,NM_001258029.1
OSCJM-PT42-193-T	2972	BRF1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT42-279-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	105684121	105684121	T	C	K511R	Missense_Mutation	N	0.66	getma.org/?cm=var&var=hg19,14,105684121,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TF3B_HUMAN&rb=453&re=547&var=K511R	GRCh37	-1	SNP	novel	unknown	0	aAg/aGg	NM_001519.3,NM_001242787.1
OSCJM-PT21-238-T	2975	GTF3C1	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT21-231-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	27510036	27510036	G	T	P694T	Missense_Mutation	M	2.515	getma.org/?cm=var&var=hg19,16,27510036,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TF3C1_HUMAN&rb=602&re=2107&var=P694T	GRCh37	-1	SNP	novel	.	0	Ccg/Acg	NM_001520.3
OSCJM-PT48-530-T	2975	GTF3C1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT48-60-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	27476660	27476660	T	C	K1759R	Missense_Mutation	N	-0.315	getma.org/?cm=var&var=hg19,16,27476660,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TF3C1_HUMAN&rb=602&re=2107&var=K1759R	GRCh37	-1	SNP	novel	unknown	0	aAg/aGg	NM_001520.3
OSCJM-PT41-180-T	2986	GUCY2F	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	108625386	108625386	C	G	E1037D	Missense_Mutation	N	0.51	getma.org/?cm=var&var=hg19,X,108625386,C,G&fts=all	getma.org/pdb.php?prot=GUC2F_HUMAN&from=875&to=1062&var=E1037D	getma.org/?cm=msa&ty=f&p=GUC2F_HUMAN&rb=875&re=1062&var=E1037D	GRCh37	-1	SNP	novel	unknown	0	gaG/gaC	NM_001522.2
OSCJM-PTA-367-T	3005	H1F0	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	38201688	38201688	C	G	S46W	Missense_Mutation	H	4.175	getma.org/?cm=var&var=hg19,22,38201688,C,G&fts=all	getma.org/pdb.php?prot=H10_HUMAN&from=24&to=97&var=S46W	getma.org/?cm=msa&ty=f&p=H10_HUMAN&rb=24&re=97&var=S46W	GRCh37	1	SNP	novel	unknown	0	tCg/tGg	NM_005318.3
OSCJM-PT01-166-T	3017	HIST1H2BD	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	26158692	26158692	G	C	V99L	Missense_Mutation	H	3.515	getma.org/?cm=var&var=hg19,6,26158692,G,C&fts=all	getma.org/pdb.php?prot=H2B1D_HUMAN&from=32&to=102&var=V99L	getma.org/?cm=msa&ty=f&p=H2B1D_HUMAN&rb=32&re=102&var=V99L	GRCh37	1	SNP	NA	NA	0	Gtg/Ctg	NM_138720.2
OSCJM-PT50-575-T	3018	HIST1H2BB	hgsc.bcm.edu	Illumina	Somatic	A	C	OSCJM-PT50-81-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	26043774	26043774	A	C	Y38D	Missense_Mutation	M	3.375	getma.org/?cm=var&var=hg19,6,26043774,A,C&fts=all	getma.org/pdb.php?prot=H2B1B_HUMAN&from=32&to=102&var=Y38D	getma.org/?cm=msa&ty=f&p=H2B1B_HUMAN&rb=32&re=102&var=Y38D	GRCh37	-1	SNP	novel	unknown	0	Tat/Gat	NM_021062.2
OSCJM-PT12-478-T	3021	H3F3B	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	73775145	73775145	C	G	K37N	Missense_Mutation	H	3.65	getma.org/?cm=var&var=hg19,17,73775145,C,G&fts=all	getma.org/pdb.php?prot=H33_HUMAN&from=1&to=57&var=K37N	getma.org/?cm=msa&ty=f&p=H33_HUMAN&rb=1&re=57&var=K37N	GRCh37	-1	SNP	novel	unknown	0	aaG/aaC	NM_005324.3
OSCJM-PT40-169-T	3034	HAL	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	96377733	96377733	T	C	K415E	Missense_Mutation	N	0.485	getma.org/?cm=var&var=hg19,12,96377733,T,C&fts=all	getma.org/pdb.php?prot=HUTH_HUMAN&from=114&to=592&var=K415E	getma.org/?cm=msa&ty=f&p=HUTH_HUMAN&rb=114&re=592&var=K415E	GRCh37	-1	SNP	NA	NA	0	Aag/Gag	NM_002108.3
OSCJM-PTA-367-T	3062	HCRTR2	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	55113499	55113499	C	G	L96V	Missense_Mutation	H	3.66	getma.org/?cm=var&var=hg19,6,55113499,C,G&fts=all	getma.org/pdb.php?prot=OX2R_HUMAN&from=71&to=364&var=L96V	getma.org/?cm=msa&ty=f&p=OX2R_HUMAN&rb=71&re=364&var=L96V	GRCh37	1	SNP	NA	NA	0	Ctt/Gtt	NM_001526.3
OSCJM-PT37-513-T	3062	HCRTR2	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	55039422	55039422	C	A	R13S	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,6,55039422,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=OX2R_HUMAN&rb=1&re=70&var=R13S	GRCh37	1	SNP	novel	.	0	Cgc/Agc	NM_001526.3
OSCJM-PTD-578-T	3064	HTT	hgsc.bcm.edu	Illumina	Somatic	GAG	-	OSCJM-PTD-439-N	GAG	GAG	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					4	3230411	3230413	GAG	-	E2643del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.0603	GAG/-	NM_002111.6
OSCJM-PTC-139-T	3067	HDC	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	50534666	50534666	C	T	A594T	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,15,50534666,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DCHS_HUMAN&rb=415&re=614&var=A594T	GRCh37	-1	SNP	NA	NA	0	Gct/Act	NM_002112.3
OSCJM-PT46-394-T	3069	HDLBP	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	242179156	242179156	C	T	R824Q	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,2,242179156,C,T&fts=all	getma.org/pdb.php?prot=VIGLN_HUMAN&from=802&to=863&var=R824Q	getma.org/?cm=msa&ty=f&p=VIGLN_HUMAN&rb=802&re=863&var=R824Q	GRCh37	-1	SNP	novel	unknown	0.00002	cGg/cAg	NM_203346.3
OSCJM-PT11-385-T	3073	HEXA	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT11-517-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	72641550	72641550	T	C	T286A	Missense_Mutation	M	2.28	getma.org/?cm=var&var=hg19,15,72641550,T,C&fts=all	getma.org/pdb.php?prot=HEXA_HUMAN&from=167&to=488&var=T286A	getma.org/?cm=msa&ty=f&p=HEXA_HUMAN&rb=167&re=488&var=T286A	GRCh37	-1	SNP	NA	NA	0	Acc/Gcc	NM_000520.4
OSCJM-PT48-530-T	3075	CFH	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	196712738	196712738	C	T	T1097M	Missense_Mutation	H	3.71	getma.org/?cm=var&var=hg19,1,196712738,C,T&fts=all	getma.org/pdb.php?prot=CFAH_HUMAN&from=1048&to=1102&var=T1097M	getma.org/?cm=msa&ty=f&p=CFAH_HUMAN&rb=1048&re=1102&var=T1097M	GRCh37	1	SNP	NA	NA	0.00002	aCg/aTg	NM_000186.3
OSCJM-PT20-600-T	3077	HFE	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT20-506-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	26094445	26094445	A	T	E346D	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,6,26094445,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=HFE_HUMAN&rb=295&re=348&var=E346D	GRCh37	1	SNP	novel	.	0	gaA/gaT	NM_000410.3,NM_139006.2
OSCJM-PT14-353-T	3078	CFHR1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	196799684	196799684	C	T	S221L	Missense_Mutation	M	2.215	getma.org/?cm=var&var=hg19,1,196799684,C,T&fts=all	getma.org/pdb.php?prot=FHR1_HUMAN&from=208&to=262&var=S221L	getma.org/?cm=msa&ty=f&p=FHR1_HUMAN&rb=208&re=262&var=S221L	GRCh37	1	SNP	novel	unknown	0	tCa/tTa	NM_002113.2
OSCJM-PT46-394-T	3096	HIVEP1	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	12161765	12161765	A	T	D2194V	Missense_Mutation	M	2.695	getma.org/?cm=var&var=hg19,6,12161765,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZEP1_HUMAN&rb=2128&re=2327&var=D2194V	GRCh37	1	SNP	novel	unknown	0	gAt/gTt	NM_002114.2
OSCJM-PT07-43-T	3105	HLA-A	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	29910349	29910349	C	T	R7*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,29910349,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NA
OSCJM-PT12-478-T	3105	HLA-A	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT12-103-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	29910688	29910688	A	G	I76M	Missense_Mutation	N	-1.14	getma.org/?cm=var&var=hg19,6,29910688,A,G&fts=all	getma.org/pdb.php?prot=1A69_HUMAN&from=25&to=203&var=I76M	getma.org/?cm=msa&ty=f&p=1A69_HUMAN&rb=25&re=203&var=I76M	GRCh37	1	SNP	rs41544012	unknown	0.1765	atA/atG	NA
OSCJM-PT15-391-T	3105	HLA-A	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	29910742	29910742	G	C	Q94H	Missense_Mutation	N	-0.835	getma.org/?cm=var&var=hg19,6,29910742,G,C&fts=all	getma.org/pdb.php?prot=1A69_HUMAN&from=25&to=203&var=Q94H	getma.org/?cm=msa&ty=f&p=1A69_HUMAN&rb=25&re=203&var=Q94H	GRCh37	1	SNP	rs1059463	byCluster;byFrequency	0.6566	caG/caC	NA
OSCJM-PT01-166-T	3106	HLA-B	hgsc.bcm.edu	Illumina	Somatic	T	-	OSCJM-PT01-583-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	31324604	31324604	T	-	E69Rfs*8	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	rs66519358	unknown	0.1736	agA/ag	NM_005514.6
OSCJM-PT11-385-T	3106	HLA-B	hgsc.bcm.edu	SOLID	Somatic	CA	-	OSCJM-PT11-517-N	CA	CA	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					6	31322969	31322970	CA	-	V309Gfs*24	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0	gTG/g	NM_005514.6
OSCJM-PT20-600-T	3106	HLA-B	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	31324542	31324542	T	C	Q89R	Missense_Mutation	N	-0.56	getma.org/?cm=var&var=hg19,6,31324542,T,C&fts=all	getma.org/pdb.php?prot=1B55_HUMAN&from=25&to=203&var=Q89R	getma.org/?cm=msa&ty=f&p=1B55_HUMAN&rb=25&re=203&var=Q89R	GRCh37	-1	SNP	rs151341188	unknown	0.0386	cAg/cGg	NM_005514.6
OSCJM-PT05-91-T	3106	HLA-B	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PT05-46-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	31324601	31324602	-	G	E69Dfs*30	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0.1179	gag/gaCg	NM_005514.6
OSCJM-PTD-578-T	3106	HLA-B	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	31324925	31324925	A	G	M4T	Missense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,31324925,A,G&fts=all	NA	NA	GRCh37	-1	SNP	rs1050458	byCluster;byFrequency	0.5975	aTg/aCg	NM_005514.6
OSCJM-PT07-43-T	3107	HLA-C	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	31238910	31238910	T	G	T187P	Missense_Mutation	M	2.585	getma.org/?cm=var&var=hg19,6,31238910,T,G&fts=all	getma.org/pdb.php?prot=1C08_HUMAN&from=25&to=203&var=T187P	getma.org/?cm=msa&ty=f&p=1C08_HUMAN&rb=25&re=203&var=T187P	GRCh37	-1	SNP	rs1050685	byCluster;byFrequency	0.3186	Acg/Ccg	NM_002117.5
OSCJM-PT07-43-T	3107	HLA-C	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	31238909	31238909	G	A	T187M	Missense_Mutation	H	3.535	getma.org/?cm=var&var=hg19,6,31238909,G,A&fts=all	getma.org/pdb.php?prot=1C08_HUMAN&from=25&to=203&var=T187M	getma.org/?cm=msa&ty=f&p=1C08_HUMAN&rb=25&re=203&var=T187M	GRCh37	-1	SNP	rs1050686	byCluster	0.3168	aCg/aTg	NM_002117.5
OSCJM-PTC-139-T	3117	HLA-DQA1	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PTC-295-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	32609296	32609297	-	G	I98Sfs*4	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0.001	atc/aGtc	NM_002122.3
OSCJM-PTB-347-T	3117	HLA-DQA1	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PTB-173-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	32609296	32609297	-	G	I98Sfs*4	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0.001	atc/aGtc	NM_002122.3
OSCJM-PTC-139-T	3117	HLA-DQA1	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PTC-295-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	32609299	32609299	A	-	M99*	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.0011	Atg/tg	NM_002122.3
OSCJM-PTB-347-T	3117	HLA-DQA1	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PTB-173-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	32609299	32609299	A	-	M99*	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.0011	Atg/tg	NM_002122.3
OSCJM-PT40-169-T	3117	HLA-DQA1	hgsc.bcm.edu	Illumina	Somatic	GGT	-	OSCJM-PT40-108-N	GGT	GGT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	32609239	32609241	GGT	-	G79del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.2391	GGT/-	NM_002122.3
OSCJM-PTB-347-T	3117	HLA-DQA1	hgsc.bcm.edu	Illumina	Somatic	GGT	-	OSCJM-PTB-173-N	GGT	GGT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	32609239	32609241	GGT	-	G79del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.2391	GGT/-	NM_002122.3
OSCJM-PT40-169-T	3141	HLCS	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					21	38309264	38309264	C	T	A161T	Missense_Mutation	M	1.95	getma.org/?cm=var&var=hg19,21,38309264,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=BPL1_HUMAN&rb=150&re=447&var=A161T	GRCh37	-1	SNP	novel	unknown	0	Gca/Aca	NM_000411.6,NM_001242785.1
OSCJM-PT07-43-T	3156	HMGCR	hgsc.bcm.edu	Cross	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					5	74655134	74655134	A	G	Q766R	Missense_Mutation	H	4.16	getma.org/?cm=var&var=hg19,5,74655134,A,G&fts=all	getma.org/pdb.php?prot=HMDH_HUMAN&from=489&to=871&var=Q766R	getma.org/?cm=msa&ty=f&p=HMDH_HUMAN&rb=489&re=871&var=Q766R	GRCh37	1	SNP	NA	NA	0	cAg/cGg	NM_000859.2
OSCJM-PT12-478-T	3171	FOXA3	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	46375776	46375776	C	G	F171L	Missense_Mutation	N	0.025	getma.org/?cm=var&var=hg19,19,46375776,C,G&fts=all	getma.org/pdb.php?prot=FOXA3_HUMAN&from=117&to=212&var=F171L	getma.org/?cm=msa&ty=f&p=FOXA3_HUMAN&rb=117&re=212&var=F171L	GRCh37	1	SNP	novel	unknown	0	ttC/ttG	NM_004497.2
OSCJM-PT40-169-T	3177	SLC29A2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	66134014	66134014	C	T	S252N	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,11,66134014,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=S29A2_HUMAN&rb=131&re=454&var=S252N	GRCh37	-1	SNP	NA	NA	0.00001	aGt/aAt	NM_001532.2
OSCJM-PT41-180-T	3178	HNRNPA1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	54675233	54675233	G	T	D27Y	Missense_Mutation	M	2.965	getma.org/?cm=var&var=hg19,12,54675233,G,T&fts=all	getma.org/pdb.php?prot=ROA1_HUMAN&from=16&to=85&var=D27Y	getma.org/?cm=msa&ty=f&p=ROA1_HUMAN&rb=16&re=85&var=D27Y	GRCh37	1	SNP	novel	unknown	0	Gat/Tat	NM_002136.2,NM_031157.2
OSCJM-PT41-180-T	3178	HNRNPA1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	54675224	54675224	G	T	E24*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,12,54675224,G,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Gaa/Taa	NM_002136.2,NM_031157.2
OSCJM-PT12-478-T	3188	HNRNPH2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	100667706	100667706	G	C	D244H	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,X,100667706,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=HNRH2_HUMAN&rb=183&re=254&var=D244H	GRCh37	1	SNP	novel	unknown	0	Gat/Cat	NM_001199974.1,NM_001199973.1,NM_019597.4,NM_001032393.2
OSCJM-PT01-166-T	3235	HOXD9	hgsc.bcm.edu	Illumina	Somatic	-	GCA	OSCJM-PT01-583-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					2	176988290	176988291	-	GCA	Q269dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0.4143	ccg/ccGCAg	NM_014213.3
OSCJM-PT27-562-T	3235	HOXD9	hgsc.bcm.edu	SOLID	Somatic	-	GCA	OSCJM-PT27-497-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					2	176988290	176988291	-	GCA	Q269dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0.4143	ccg/ccGCAg	NM_014213.3
OSCJM-PT48-530-T	3237	HOXD11	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	176972205	176972205	G	A	C41Y	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,2,176972205,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=HXD11_HUMAN&rb=26&re=206&var=C41Y	GRCh37	1	SNP	novel	unknown	0	tGc/tAc	NM_021192.2
OSCJM-PT03-388-T	3265	HRAS	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	534289	534289	C	A	G12C	Missense_Mutation	M	2.83	getma.org/?cm=var&var=hg19,11,534289,C,A&fts=all	getma.org/pdb.php?prot=RASH_HUMAN&from=5&to=165&var=G12C	getma.org/?cm=msa&ty=f&p=RASH_HUMAN&rb=5&re=165&var=G12C	GRCh37	-1	SNP	NA	NA	0	Ggc/Tgc	NA
OSCJM-PT01-166-T	3265	HRAS	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	534288	534288	C	T	G12D	Missense_Mutation	M	3.305	getma.org/?cm=var&var=hg19,11,534288,C,T&fts=all	getma.org/pdb.php?prot=RASH_HUMAN&from=5&to=165&var=G12D	getma.org/?cm=msa&ty=f&p=RASH_HUMAN&rb=5&re=165&var=G12D	GRCh37	-1	SNP	rs104894230	NA	0	gGc/gAc	NA
OSCJM-PT49-537-T	3265	HRAS	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	534288	534288	C	T	G12D	Missense_Mutation	M	3.305	getma.org/?cm=var&var=hg19,11,534288,C,T&fts=all	getma.org/pdb.php?prot=RASH_HUMAN&from=5&to=165&var=G12D	getma.org/?cm=msa&ty=f&p=RASH_HUMAN&rb=5&re=165&var=G12D	GRCh37	-1	SNP	rs104894230	NA	0	gGc/gAc	NA
OSCJM-PT41-180-T	3265	HRAS	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	534289	534289	C	T	G12S	Missense_Mutation	L	1.535	getma.org/?cm=var&var=hg19,11,534289,C,T&fts=all	getma.org/pdb.php?prot=RASH_HUMAN&from=5&to=165&var=G12S	getma.org/?cm=msa&ty=f&p=RASH_HUMAN&rb=5&re=165&var=G12S	GRCh37	-1	SNP	NA	NA	0	Ggc/Agc	NA
OSCJM-PT48-530-T	3265	HRAS	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	534289	534289	C	T	G12S	Missense_Mutation	L	1.535	getma.org/?cm=var&var=hg19,11,534289,C,T&fts=all	getma.org/pdb.php?prot=RASH_HUMAN&from=5&to=165&var=G12S	getma.org/?cm=msa&ty=f&p=RASH_HUMAN&rb=5&re=165&var=G12S	GRCh37	-1	SNP	NA	NA	0	Ggc/Agc	NA
OSCJM-PT10-325-T	3268	AGFG2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	100148025	100148025	C	T	R108W	Missense_Mutation	M	2.715	getma.org/?cm=var&var=hg19,7,100148025,C,T&fts=all	getma.org/pdb.php?prot=AGFG2_HUMAN&from=32&to=148&var=R108W	getma.org/?cm=msa&ty=f&p=AGFG2_HUMAN&rb=32&re=148&var=R108W	GRCh37	1	SNP	novel	.	0	Cgg/Tgg	NM_006076.4
OSCJM-PTB-347-T	3270	HRC	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	49657455	49657455	C	T	G347D	Missense_Mutation	L	1.665	getma.org/?cm=var&var=hg19,19,49657455,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SRCH_HUMAN&rb=323&re=377&var=G347D	GRCh37	-1	SNP	novel	unknown	0	gGc/gAc	NM_002152.2
OSCJM-PT45-364-T	3273	HRG	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	186395433	186395433	C	T	P447S	Missense_Mutation	L	1.24	getma.org/?cm=var&var=hg19,3,186395433,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=HRG_HUMAN&rb=310&re=509&var=P447S	GRCh37	1	SNP	novel	unknown	0	Ccc/Tcc	NM_000412.2
OSCJM-PT01-166-T	3321	IGSF3	hgsc.bcm.edu	Illumina	Somatic	-	TCC	OSCJM-PT01-583-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					1	117122285	117122286	-	TCC	D1020_D1021insE	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	NA	NA	0.2469	gac/gaGGAc	NM_001007237.2
OSCJM-PT03-388-T	3321	IGSF3	hgsc.bcm.edu	Illumina	Somatic	-	TCC	OSCJM-PT03-66-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					1	117122285	117122286	-	TCC	D1020_D1021insE	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	NA	NA	0.2469	gac/gaGGAc	NM_001007237.2
OSCJM-PT49-537-T	3321	IGSF3	hgsc.bcm.edu	Illumina	Somatic	-	TCC	OSCJM-PT49-585-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					1	117122285	117122286	-	TCC	D1020_D1021insE	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	NA	NA	0.2469	gac/gaGGAc	NM_001007237.2
OSCJM-PT22-229-T	3350	HTR1A	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	63256473	63256473	C	G	W358C	Missense_Mutation	H	4.24	getma.org/?cm=var&var=hg19,5,63256473,C,G&fts=all	getma.org/pdb.php?prot=5HT1A_HUMAN&from=53&to=400&var=W358C	getma.org/?cm=msa&ty=f&p=5HT1A_HUMAN&rb=53&re=400&var=W358C	GRCh37	-1	SNP	novel	.	0	tgG/tgC	NM_000524.3
OSCJM-PT03-388-T	3356	HTR2A	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	47469881	47469881	T	C	N54S	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,13,47469881,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=5HT2A_HUMAN&rb=1&re=90&var=N54S	GRCh37	-1	SNP	NA	NA	0	aAc/aGc	NA
OSCJM-PT47-449-T	3359	HTR3A	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT47-225-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	113860203	113860203	C	A	C385*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,11,113860203,C,A&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	tgC/tgA	NA
OSCJM-PT47-449-T	3360	HTR4	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT47-225-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	147929745	147929745	C	G	G36A	Missense_Mutation	M	3.12	getma.org/?cm=var&var=hg19,5,147929745,C,G&fts=all	getma.org/pdb.php?prot=5HT4R_HUMAN&from=36&to=312&var=G36A	getma.org/?cm=msa&ty=f&p=5HT4R_HUMAN&rb=36&re=312&var=G36A	GRCh37	-1	SNP	novel	unknown	0	gGg/gCg	NM_000870.5
OSCJM-PT32-489-T	3363	HTR7	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	92509226	92509226	G	C	A222G	Missense_Mutation	N	0.73	getma.org/?cm=var&var=hg19,10,92509226,G,C&fts=all	getma.org/pdb.php?prot=5HT7R_HUMAN&from=98&to=384&var=A222G	getma.org/?cm=msa&ty=f&p=5HT7R_HUMAN&rb=98&re=384&var=A222G	GRCh37	-1	SNP	NA	NA	0	gCt/gGt	NM_019859.3
OSCJM-PT03-388-T	3371	TNC	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	117826943	117826943	G	A	S1157F	Missense_Mutation	M	2.97	getma.org/?cm=var&var=hg19,9,117826943,G,A&fts=all	getma.org/pdb.php?prot=TENA_HUMAN&from=1075&to=1162&var=S1157F	getma.org/?cm=msa&ty=f&p=TENA_HUMAN&rb=1075&re=1162&var=S1157F	GRCh37	-1	SNP	NA	NA	0	tCt/tTt	NM_002160.3
OSCJM-PT33-288-T	3382	ICA1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	8167548	8167548	G	A	Q429*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,7,8167548,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_022307.2
OSCJM-PT49-537-T	3382	ICA1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	8167710	8167710	G	C	L375V	Missense_Mutation	L	1.795	getma.org/?cm=var&var=hg19,7,8167710,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ICA69_HUMAN&rb=261&re=483&var=L375V	GRCh37	-1	SNP	novel	unknown	0	Ctg/Gtg	NM_022307.2
OSCJM-PT15-391-T	3394	IRF8	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					16	85953789	85953789	C	T	P355S	Missense_Mutation	M	2.035	getma.org/?cm=var&var=hg19,16,85953789,C,T&fts=all	getma.org/pdb.php?prot=IRF8_HUMAN&from=202&to=382&var=P355S	getma.org/?cm=msa&ty=f&p=IRF8_HUMAN&rb=202&re=382&var=P355S	GRCh37	1	SNP	novel	unknown	0	Ccg/Tcg	NM_002163.2
OSCJM-PT36-331-T	3422	IDI1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	1087243	1087243	C	T	E247K	Missense_Mutation	L	0.92	getma.org/?cm=var&var=hg19,10,1087243,C,T&fts=all	getma.org/pdb.php?prot=IDI1_HUMAN&from=50&to=200&var=E190K	getma.org/?cm=msa&ty=f&p=IDI1_HUMAN&rb=50&re=200&var=E190K	GRCh37	-1	SNP	novel	.	0	Gaa/Aaa	NM_004508.2
OSCJM-PT10-325-T	3459	IFNGR1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	137519502	137519502	G	C	S379C	Missense_Mutation	L	1.32	getma.org/?cm=var&var=hg19,6,137519502,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=INGR1_HUMAN&rb=338&re=489&var=S379C	GRCh37	-1	SNP	NA	NA	0	tCt/tGt	NM_000416.2
OSCJM-PT40-169-T	3508	IGHMBP2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	68704028	68704028	C	T	R694W	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,11,68704028,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMBP2_HUMAN&rb=616&re=729&var=R694W	GRCh37	1	SNP	rs2236654	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.185	Cgg/Tgg	NM_002180.2
OSCJM-PT43-201-T	3547	IGSF1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	130409458	130409458	C	T	V1060I	Missense_Mutation	M	2.18	getma.org/?cm=var&var=hg19,X,130409458,C,T&fts=all	getma.org/pdb.php?prot=IGSF1_HUMAN&from=970&to=1060&var=V1060I	getma.org/?cm=msa&ty=f&p=IGSF1_HUMAN&rb=970&re=1060&var=V1060I	GRCh37	-1	SNP	novel	unknown	0	Gtc/Atc	NA
OSCJM-PTD-578-T	3598	IL13RA2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	114238663	114238663	C	T	E375K	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,X,114238663,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=I13R2_HUMAN&rb=236&re=380&var=E375K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_000640.2
OSCJM-PT45-364-T	3598	IL13RA2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	114250285	114250285	C	A	C65F	Missense_Mutation	M	2.25	getma.org/?cm=var&var=hg19,X,114250285,C,A&fts=all	getma.org/pdb.php?prot=I13R2_HUMAN&from=31&to=124&var=C65F	getma.org/?cm=msa&ty=f&p=I13R2_HUMAN&rb=31&re=124&var=C65F	GRCh37	-1	SNP	novel	unknown	0	tGc/tTc	NM_000640.2
OSCJM-PT48-530-T	3598	IL13RA2	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT48-60-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	114244118	114244118	T	A	E273V	Missense_Mutation	M	2.08	getma.org/?cm=var&var=hg19,X,114244118,T,A&fts=all	getma.org/pdb.php?prot=I13R2_HUMAN&from=238&to=336&var=E273V	getma.org/?cm=msa&ty=f&p=I13R2_HUMAN&rb=238&re=336&var=E273V	GRCh37	-1	SNP	novel	unknown	0	gAa/gTa	NM_000640.2
OSCJM-PT10-325-T	3625	INHBB	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT10-70-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	121106686	121106686	T	C	S154P	Missense_Mutation	N	0.49	getma.org/?cm=var&var=hg19,2,121106686,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=INHBB_HUMAN&rb=55&re=279&var=S154P	GRCh37	1	SNP	novel	unknown	0	Tcc/Ccc	NM_002193.2
OSCJM-PTC-139-T	3635	INPP5D	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	234070428	234070428	C	T	P20L	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0.00003	cCg/cTg	NA
OSCJM-PT35-37-T	3638	INSIG1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	155094013	155094013	C	T	S197F	Missense_Mutation	M	2.48	getma.org/?cm=var&var=hg19,7,155094013,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=INSI1_HUMAN&rb=84&re=267&var=S197F	GRCh37	1	SNP	novel	.	0	tCt/tTt	NM_005542.4
OSCJM-PT03-388-T	3665	IRF7	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	614318	614318	T	C	K179E	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,11,614318,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=IRF7_HUMAN&rb=128&re=285&var=K179E	GRCh37	-1	SNP	NA	NA	0.2659	Aag/Gag	NM_001572.3
OSCJM-PTB-347-T	3684	ITGAM	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	31273075	31273075	G	A	A31T	Missense_Mutation	M	1.975	getma.org/?cm=var&var=hg19,16,31273075,G,A&fts=all	getma.org/pdb.php?prot=ITAM_HUMAN&from=1&to=149&var=A31T	getma.org/?cm=msa&ty=f&p=ITAM_HUMAN&rb=1&re=149&var=A31T	GRCh37	1	SNP	novel	unknown	0	Gca/Aca	NA
OSCJM-PT12-478-T	3687	ITGAX	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT12-103-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	31371677	31371677	A	G	K252E	Missense_Mutation	H	4.005	getma.org/?cm=var&var=hg19,16,31371677,A,G&fts=all	getma.org/pdb.php?prot=ITAX_HUMAN&from=151&to=329&var=K252E	getma.org/?cm=msa&ty=f&p=ITAX_HUMAN&rb=151&re=329&var=K252E	GRCh37	1	SNP	novel	unknown	0	Aaa/Gaa	NM_000887.3
OSCJM-PT30-592-T	3691	ITGB4	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT30-587-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	73753503	73753503	T	C	L1779P	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,17,73753503,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ITB4_HUMAN&rb=1729&re=1822&var=L1779P	GRCh37	1	SNP	NA	NA	0.7139	cTg/cCg	NM_000213.3
OSCJM-PT35-37-T	3691	ITGB4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT35-339-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	73747119	73747119	G	A	W1240*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,73747119,G,A&fts=all	NA	NA	GRCh37	1	SNP	novel	.	0	tgG/tgA	NM_000213.3
OSCJM-PT03-388-T	3695	ITGB7	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	53586963	53586963	C	A	D563Y	Missense_Mutation	L	1.6	getma.org/?cm=var&var=hg19,12,53586963,C,A&fts=all	getma.org/pdb.php?prot=ITB7_HUMAN&from=477&to=603&var=D563Y	getma.org/?cm=msa&ty=f&p=ITB7_HUMAN&rb=477&re=603&var=D563Y	GRCh37	-1	SNP	NA	NA	0	Gat/Tat	NM_000889.1
OSCJM-PT33-288-T	3695	ITGB7	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	53589937	53589937	G	A	S288L	Missense_Mutation	M	2.61	getma.org/?cm=var&var=hg19,12,53589937,G,A&fts=all	getma.org/pdb.php?prot=ITB7_HUMAN&from=50&to=476&var=S288L	getma.org/?cm=msa&ty=f&p=ITB7_HUMAN&rb=50&re=476&var=S288L	GRCh37	-1	SNP	novel	.	0	tCa/tTa	NM_000889.1
OSCJM-PT32-489-T	3709	ITPR2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	26808679	26808679	G	A	P851S	Missense_Mutation	N	0.68	getma.org/?cm=var&var=hg19,12,26808679,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ITPR2_HUMAN&rb=678&re=877&var=P851S	GRCh37	-1	SNP	NA	NA	0	Cct/Tct	NM_002223.2
OSCJM-PT15-391-T	3709	ITPR2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	26589171	26589171	C	G	G2251A	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,12,26589171,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ITPR2_HUMAN&rb=2228&re=2261&var=G2251A	GRCh37	-1	SNP	novel	unknown	0	gGg/gCg	NM_002223.2
OSCJM-PT35-37-T	3710	ITPR3	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT35-339-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	33648389	33648389	A	T	S1470C	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,6,33648389,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ITPR3_HUMAN&rb=1346&re=1545&var=S1470C	GRCh37	1	SNP	novel	.	0	Agc/Tgc	NA
OSCJM-PT48-530-T	3710	ITPR3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	33659440	33659440	G	A	C2425Y	Missense_Mutation	M	2.705	getma.org/?cm=var&var=hg19,6,33659440,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ITPR3_HUMAN&rb=2205&re=2516&var=C2425Y	GRCh37	1	SNP	novel	unknown	0	tGc/tAc	NA
OSCJM-PT37-513-T	3716	JAK1	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					1	65316533	65316533	A	G	M570T	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,1,65316533,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=JAK1_HUMAN&rb=401&re=582&var=M570T	GRCh37	-1	SNP	novel	.	0	aTg/aCg	NM_002227.2
OSCJM-PT12-478-T	3738	KCNA3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	111216579	111216579	G	A	R285C	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,1,111216579,G,A&fts=all	getma.org/pdb.php?prot=KCNA3_HUMAN&from=198&to=296&var=R285C	getma.org/?cm=msa&ty=f&p=KCNA3_HUMAN&rb=198&re=296&var=R285C	GRCh37	-1	SNP	novel	unknown	0	Cgc/Tgc	NM_002232.3
OSCJM-PT10-325-T	3751	KCND2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	120385964	120385964	G	A	R533Q	Missense_Mutation	M	2.165	getma.org/?cm=var&var=hg19,7,120385964,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=KCND2_HUMAN&rb=445&re=547&var=R533Q	GRCh37	1	SNP	NA	NA	0.00008	cGa/cAa	NM_012281.2
OSCJM-PT22-229-T	3752	KCND3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	112524769	112524769	C	T	A194T	Missense_Mutation	M	2.035	getma.org/?cm=var&var=hg19,1,112524769,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=KCND3_HUMAN&rb=132&re=227&var=A194T	GRCh37	-1	SNP	novel	.	0	Gct/Act	NM_004980.4
OSCJM-PT03-388-T	3757	KCNH2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	150671807	150671807	C	T	R100Q	Missense_Mutation	H	3.84	getma.org/?cm=var&var=hg19,7,150671807,C,T&fts=all	getma.org/pdb.php?prot=KCNH2_HUMAN&from=29&to=134&var=R100Q	getma.org/?cm=msa&ty=f&p=KCNH2_HUMAN&rb=29&re=134&var=R100Q	GRCh37	-1	SNP	novel	unknown	0	cGg/cAg	NM_000238.3
OSCJM-PT18-392-T	3757	KCNH2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	150649794	150649794	G	A	P426S	Missense_Mutation	H	3.57	getma.org/?cm=var&var=hg19,7,150649794,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=KCNH2_HUMAN&rb=335&re=453&var=P426S	GRCh37	-1	SNP	novel	.	0	Ccc/Tcc	NM_000238.3
OSCJM-PT03-388-T	3760	KCNJ3	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	155566160	155566160	G	A	E250K	Missense_Mutation	M	1.945	getma.org/?cm=var&var=hg19,2,155566160,G,A&fts=all	getma.org/pdb.php?prot=IRK3_HUMAN&from=47&to=385&var=E250K	getma.org/?cm=msa&ty=f&p=IRK3_HUMAN&rb=47&re=385&var=E250K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_002239.3,NM_001260509.1
OSCJM-PTB-347-T	3760	KCNJ3	hgsc.bcm.edu	Cross	Somatic	A	G	OSCJM-PTB-173-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					2	155711583	155711583	A	G	T422A	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,2,155711583,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=IRK3_HUMAN&rb=386&re=501&var=T422A	GRCh37	1	SNP	novel	unknown	0	Aca/Gca	NM_002239.3,NM_001260509.1
OSCJM-PT01-166-T	3768	KCNJ12	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT01-583-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	21319439	21319439	T	G	I262S	Missense_Mutation	M	2.925	getma.org/?cm=var&var=hg19,17,21319439,T,G&fts=all	getma.org/pdb.php?prot=IRK12_HUMAN&from=47&to=381&var=I262S	getma.org/?cm=msa&ty=f&p=IRK12_HUMAN&rb=47&re=381&var=I262S	GRCh37	1	SNP	rs76684759	NA	0.1865	aTc/aGc	NM_001194958.2
OSCJM-PT18-392-T	3768	KCNJ12	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	21319369	21319369	G	A	E239K	Missense_Mutation	N	0.375	getma.org/?cm=var&var=hg19,17,21319369,G,A&fts=all	getma.org/pdb.php?prot=IRK12_HUMAN&from=47&to=381&var=E239K	getma.org/?cm=msa&ty=f&p=IRK12_HUMAN&rb=47&re=381&var=E239K	GRCh37	1	SNP	novel	.	0.2769	Gag/Aag	NM_001194958.2
OSCJM-PT37-513-T	3768	KCNJ12	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	21319468	21319468	C	T	H272Y	Missense_Mutation	H	4.16	getma.org/?cm=var&var=hg19,17,21319468,C,T&fts=all	getma.org/pdb.php?prot=IRK12_HUMAN&from=47&to=381&var=H272Y	getma.org/?cm=msa&ty=f&p=IRK12_HUMAN&rb=47&re=381&var=H272Y	GRCh37	1	SNP	novel	.	0	Cat/Tat	NM_001194958.2
OSCJM-PT22-229-T	3778	KCNMA1	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	78870012	78870012	C	A	M350I	Missense_Mutation	N	0.775	getma.org/?cm=var&var=hg19,10,78870012,C,A&fts=all	getma.org/pdb.php?prot=KCMA1_HUMAN&from=216&to=387&var=M350I	getma.org/?cm=msa&ty=f&p=KCMA1_HUMAN&rb=216&re=387&var=M350I	GRCh37	-1	SNP	novel	.	0	atG/atT	NM_001161352.1
OSCJM-PT13-258-T	3782	KCNN3	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT13-257-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	154842238	154842238	T	A	Q68L	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,1,154842238,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=KCNN3_HUMAN&rb=1&re=200&var=Q68L	GRCh37	-1	SNP	novel	unknown	0	cAg/cTg	NM_001204087.1,NM_002249.5
OSCJM-PT10-325-T	3785	KCNQ2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	62071057	62071057	G	A	T274M	Missense_Mutation	H	4.255	getma.org/?cm=var&var=hg19,20,62071057,G,A&fts=all	getma.org/pdb.php?prot=KCNQ2_HUMAN&from=128&to=312&var=T274M	getma.org/?cm=msa&ty=f&p=KCNQ2_HUMAN&rb=128&re=312&var=T274M	GRCh37	-1	SNP	NA	NA	0	aCg/aTg	NM_172107.2
OSCJM-PT46-394-T	3785	KCNQ2	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	62059723	62059723	A	T	F405Y	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,20,62059723,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=KCNQ2_HUMAN&rb=313&re=463&var=F405Y	GRCh37	-1	SNP	novel	unknown	0	tTc/tAc	NM_172107.2
OSCJM-PT43-201-T	3827	KNG1	hgsc.bcm.edu	Illumina	Somatic	A	C	OSCJM-PT43-326-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	186435436	186435436	A	C	K35N	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,3,186435436,A,C&fts=all	getma.org/pdb.php?prot=KNG1_HUMAN&from=21&to=116&var=K35N	getma.org/?cm=msa&ty=f&p=KNG1_HUMAN&rb=21&re=116&var=K35N	GRCh37	1	SNP	novel	unknown	0	aaA/aaC	NM_001102416.2
OSCJM-PT22-229-T	3835	KIF22	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	29816219	29816219	G	C	G588R	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,16,29816219,G,C&fts=all	getma.org/pdb.php?prot=KIF22_HUMAN&from=460&to=590&var=G588R	getma.org/?cm=msa&ty=f&p=KIF22_HUMAN&rb=460&re=590&var=G588R	GRCh37	1	SNP	novel	.	0	Ggg/Cgg	NM_001256269.1,NM_007317.2
OSCJM-PT13-258-T	3851	KRT4	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PT13-257-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					12	53207602	53207603	-	G	G155Rfs*16	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0.008	-/C	NA
OSCJM-PTB-347-T	3851	KRT4	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PTB-173-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					12	53207602	53207603	-	G	G155Rfs*16	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0.008	-/C	NA
OSCJM-PTA-367-T	3851	KRT4	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PTA-308-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					12	53207602	53207603	-	G	G155Rfs*16	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0.008	-/C	NA
OSCJM-PT21-238-T	3866	KRT15	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT21-231-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	39674775	39674775	G	A	S102F	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,17,39674775,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=K1C15_HUMAN&rb=1&re=103&var=S102F	GRCh37	-1	SNP	novel	.	0	tCt/tTt	NM_002275.3
OSCJM-PT46-394-T	3889	KRT83	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	52710696	52710696	C	T	D288N	Missense_Mutation	M	2.505	getma.org/?cm=var&var=hg19,12,52710696,C,T&fts=all	getma.org/pdb.php?prot=KRT83_HUMAN&from=110&to=421&var=D288N	getma.org/?cm=msa&ty=f&p=KRT83_HUMAN&rb=110&re=421&var=D288N	GRCh37	-1	SNP	novel	unknown	0.00003	Gat/Aat	NM_002282.3
OSCJM-PT03-388-T	3909	LAMA3	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	21478742	21478742	G	C	G1885A	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,18,21478742,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=LAMA3_HUMAN&rb=1839&re=2105&var=G1885A	GRCh37	1	SNP	novel	unknown	0	gGa/gCa	NM_198129.1
OSCJM-PT05-91-T	3912	LAMB1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	107566753	107566753	G	A	R1647C	Missense_Mutation	M	2.28	getma.org/?cm=var&var=hg19,7,107566753,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=LAMB1_HUMAN&rb=1577&re=1706&var=R1647C	GRCh37	-1	SNP	NA	NA	0.00003	Cgc/Tgc	NM_002291.2
OSCJM-PT05-91-T	3939	LDHA	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT05-46-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	18424398	18424398	A	G	T144A	Missense_Mutation	M	2.375	getma.org/?cm=var&var=hg19,11,18424398,A,G&fts=all	getma.org/pdb.php?prot=LDHA_HUMAN&from=21&to=161&var=T144A	getma.org/?cm=msa&ty=f&p=LDHA_HUMAN&rb=21&re=161&var=T144A	GRCh37	1	SNP	novel	unknown	0	Acc/Gcc	NA
OSCJM-PT03-388-T	3972	LHB	hgsc.bcm.edu	Cross	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					19	49520329	49520329	G	T	L4I	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,19,49520329,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LSHB_HUMAN&rb=1&re=55&var=L4I	GRCh37	-1	SNP	novel	unknown	0	Ctc/Atc	NM_000894.2
OSCJM-PT12-478-T	3980	LIG3	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	33331411	33331411	G	A	M972I	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,17,33331411,G,A&fts=all	getma.org/pdb.php?prot=DNLI3_HUMAN&from=852&to=1007&var=M972I	getma.org/?cm=msa&ty=f&p=DNLI3_HUMAN&rb=852&re=1007&var=M972I	GRCh37	1	SNP	NA	NA	0	atG/atA	NM_013975.3
OSCJM-PT35-37-T	3983	ABLIM1	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	116417745	116417745	C	A	G72V	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,10,116417745,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABLM1_HUMAN&rb=1&re=98&var=G72V	GRCh37	-1	SNP	novel	.	0	gGg/gTg	NM_002313.5
OSCJM-PT01-166-T	3991	LIPE	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	42909635	42909635	A	G	L815P	Missense_Mutation	M	2.125	getma.org/?cm=var&var=hg19,19,42909635,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=LIPS_HUMAN&rb=810&re=934&var=L815P	GRCh37	-1	SNP	novel	unknown	0	cTg/cCg	NM_005357.2
OSCJM-PT03-388-T	3992	FADS1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	61580747	61580747	G	C	P152A	Missense_Mutation	L	1.3	getma.org/?cm=var&var=hg19,11,61580747,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=FADS1_HUMAN&rb=95&re=154&var=P95A	GRCh37	-1	SNP	novel	unknown	0	Cca/Gca	NM_013402.4
OSCJM-PTB-347-T	4009	LMX1A	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	165322349	165322349	C	A	R76L	Missense_Mutation	M	2.16	getma.org/?cm=var&var=hg19,1,165322349,C,A&fts=all	getma.org/pdb.php?prot=LMX1A_HUMAN&from=35&to=90&var=R76L	getma.org/?cm=msa&ty=f&p=LMX1A_HUMAN&rb=35&re=90&var=R76L	GRCh37	-1	SNP	NA	NA	0	cGg/cTg	NM_001174069.1
OSCJM-PT03-388-T	4013	VWA5A	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	123989074	123989074	G	T	R142L	Missense_Mutation	M	2.56	getma.org/?cm=var&var=hg19,11,123989074,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=VMA5A_HUMAN&rb=133&re=279&var=R142L	GRCh37	1	SNP	NA	NA	0	cGc/cTc	NM_014622.4
OSCJM-PT20-600-T	4013	VWA5A	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT20-506-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	123988550	123988550	A	G	K72E	Missense_Mutation	L	1.42	getma.org/?cm=var&var=hg19,11,123988550,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=VMA5A_HUMAN&rb=13&re=132&var=K72E	GRCh37	1	SNP	novel	.	0	Aaa/Gaa	NM_014622.4
OSCJM-PT07-43-T	4035	LRP1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	57553664	57553664	A	G	T619A	Missense_Mutation	M	2.235	getma.org/?cm=var&var=hg19,12,57553664,A,G&fts=all	getma.org/pdb.php?prot=LRP1_HUMAN&from=614&to=657&var=T619A	getma.org/?cm=msa&ty=f&p=LRP1_HUMAN&rb=614&re=657&var=T619A	GRCh37	1	SNP	novel	unknown	0	Acg/Gcg	NM_002332.2
OSCJM-PT49-537-T	4035	LRP1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT49-585-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	57603553	57603553	A	G	K4114R	Missense_Mutation	N	-0.325	getma.org/?cm=var&var=hg19,12,57603553,A,G&fts=all	getma.org/pdb.php?prot=LRP1_HUMAN&from=4100&to=4299&var=K4114R	getma.org/?cm=msa&ty=f&p=LRP1_HUMAN&rb=4100&re=4299&var=K4114R	GRCh37	1	SNP	novel	unknown	0	aAg/aGg	NM_002332.2
OSCJM-PT45-364-T	4036	LRP2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT45-246-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	170063661	170063661	T	C	D2190G	Missense_Mutation	M	1.99	getma.org/?cm=var&var=hg19,2,170063661,T,C&fts=all	getma.org/pdb.php?prot=LRP2_HUMAN&from=2129&to=2201&var=D2190G	getma.org/?cm=msa&ty=f&p=LRP2_HUMAN&rb=2129&re=2201&var=D2190G	GRCh37	-1	SNP	novel	unknown	0	gAc/gGc	NM_004525.2
OSCJM-PTB-347-T	4052	LTBP1	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	33335670	33335670	G	T	Q295H	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,2,33335670,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LTBP1_HUMAN&rb=239&re=544&var=Q295H	GRCh37	1	SNP	NA	NA	0	caG/caT	NA
OSCJM-PTC-139-T	4054	LTBP3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	65321641	65321641	C	T	S181N	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,11,65321641,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LTBP3_HUMAN&rb=141&re=269&var=S181N	GRCh37	-1	SNP	novel	unknown	0	aGc/aAc	NM_001130144.2
OSCJM-PT01-166-T	4059	BCAM	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	45322744	45322744	A	G	T539A	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,19,45322744,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=BCAM_HUMAN&rb=448&re=541&var=T539A	GRCh37	1	SNP	rs1135062	byCluster;byFrequency;byHapMap	0.2717	Acc/Gcc	NM_005581.4,NM_001013257.2
OSCJM-PT36-331-T	4076	CAPRIN1	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	34118794	34118794	A	T	Y651F	Missense_Mutation	M	1.95	getma.org/?cm=var&var=hg19,11,34118794,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CAPR1_HUMAN&rb=367&re=683&var=Y651F	GRCh37	1	SNP	novel	.	0	tAt/tTt	NM_005898.4
OSCJM-PT03-388-T	4088	SMAD3	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	67482870	67482870	C	G	S425C	Missense_Mutation	M	3.07	getma.org/?cm=var&var=hg19,15,67482870,C,G&fts=all	getma.org/pdb.php?prot=SMAD3_HUMAN&from=232&to=425&var=S425C	getma.org/?cm=msa&ty=f&p=SMAD3_HUMAN&rb=232&re=425&var=S425C	GRCh37	1	SNP	NA	NA	0	tCt/tGt	NM_005902.3
OSCJM-PT12-478-T	4089	SMAD4	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	48575209	48575209	C	T	R135*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,18,48575209,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_005359.5
OSCJM-PT50-575-T	4089	SMAD4	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT50-81-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					18	48591847	48591847	A	G	E337G	Missense_Mutation	M	3.5	getma.org/?cm=var&var=hg19,18,48591847,A,G&fts=all	getma.org/pdb.php?prot=SMAD4_HUMAN&from=317&to=532&var=E337G	getma.org/?cm=msa&ty=f&p=SMAD4_HUMAN&rb=317&re=532&var=E337G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_005359.5
OSCJM-PT28-298-T	4113	MAGEB2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT28-437-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	30237101	30237101	G	A	G135E	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,X,30237101,G,A&fts=all	getma.org/pdb.php?prot=MAGB2_HUMAN&from=118&to=288&var=G135E	getma.org/?cm=msa&ty=f&p=MAGB2_HUMAN&rb=118&re=288&var=G135E	GRCh37	1	SNP	NA	NA	0	gGa/gAa	NM_002364.4
OSCJM-PT04-447-T	4130	MAP1A	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT04-206-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	43821514	43821514	C	A	P2615T	Missense_Mutation	N	0.455	getma.org/?cm=var&var=hg19,15,43821514,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MAP1A_HUMAN&rb=2491&re=2690&var=P2615T	GRCh37	1	SNP	NA	NA	0	Cca/Aca	NA
OSCJM-PT41-180-T	4131	MAP1B	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	71495804	71495804	C	T	R2208C	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,5,71495804,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MAP1B_HUMAN&rb=2082&re=2466&var=R2208C	GRCh37	1	SNP	novel	unknown	0.00001	Cgc/Tgc	NM_005909.3
OSCJM-PT07-43-T	4135	MAP6	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	75298616	75298616	G	A	P644S	Missense_Mutation	N	0.795	getma.org/?cm=var&var=hg19,11,75298616,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MAP6_HUMAN&rb=452&re=778&var=P644S	GRCh37	-1	SNP	NA	NA	0	Cca/Tca	NM_033063.1
OSCJM-PT48-530-T	4137	MAPT	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	44061137	44061137	G	C	G323R	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,17,44061137,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TAU_HUMAN&rb=1&re=525&var=G323R	GRCh37	1	SNP	novel	unknown	0	Gga/Cga	NM_016835.4
OSCJM-PTD-578-T	4139	MARK1	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	220804398	220804398	A	T	M311L	Missense_Mutation	N	-0.95	getma.org/?cm=var&var=hg19,1,220804398,A,T&fts=all	getma.org/pdb.php?prot=MARK1_HUMAN&from=60&to=311&var=M311L	getma.org/?cm=msa&ty=f&p=MARK1_HUMAN&rb=60&re=311&var=M311L	GRCh37	1	SNP	NA	NA	0	Atg/Ttg	NM_001286124.1
OSCJM-PT46-394-T	4141	MARS	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	57905790	57905790	G	A	X514_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	NA	NM_004990.3
OSCJM-PTD-578-T	4168	MCF2	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	138686866	138686866	T	A	R573*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,X,138686866,T,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Aga/Tga	NM_005369.4,NM_001171879.1
OSCJM-PT22-229-T	4168	MCF2	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT22-321-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	138713672	138713672	T	G	X58_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	.	0	NA	NM_005369.4,NM_001171879.1
OSCJM-PT10-325-T	4199	ME1	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	83921695	83921695	C	A	C556F	Missense_Mutation	N	-0.345	getma.org/?cm=var&var=hg19,6,83921695,C,A&fts=all	getma.org/pdb.php?prot=MAOX_HUMAN&from=523&to=572&var=C556F	getma.org/?cm=msa&ty=f&p=MAOX_HUMAN&rb=523&re=572&var=C556F	GRCh37	-1	SNP	NA	NA	0	tGt/tTt	NM_002395.4
OSCJM-PT37-513-T	4222	MEOX1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	41738823	41738823	G	A	S27L	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,17,41738823,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MEOX1_HUMAN&rb=1&re=171&var=S27L	GRCh37	-1	SNP	rs9898682;COSM436676	Cosmic	0.1213	tCg/tTg	NM_001040002.1,NM_004527.3
OSCJM-PT36-331-T	4223	MEOX2	hgsc.bcm.edu	SOLID	Somatic	TGG	-	OSCJM-PT36-126-N	TGG	TGG	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					7	15725798	15725800	TGG	-	H80del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.6217	caCCAt/cat	NM_005924.4
OSCJM-PT43-201-T	4236	MFAP1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT43-326-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	44097662	44097662	T	C	D350G	Missense_Mutation	M	3.015	getma.org/?cm=var&var=hg19,15,44097662,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MFAP1_HUMAN&rb=163&re=436&var=D350G	GRCh37	-1	SNP	novel	unknown	0	gAt/gGt	NM_005926.2
OSCJM-PT32-489-T	4240	MFGE8	hgsc.bcm.edu	SOLID	Somatic	GTGTACGA	-	OSCJM-PT32-30-N	GTGTACGA	GTGTACGA	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					15	89453067	89453074	GTGTACGA	-	S52Lfs*5	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	.	0	TCGTACACc/c	NM_005928.2
OSCJM-PTB-347-T	4288	MKI67	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	129904199	129904199	C	T	E1969K	Missense_Mutation	L	1.265	getma.org/?cm=var&var=hg19,10,129904199,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=KI67_HUMAN&rb=1936&re=2005&var=E1969K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_002417.4
OSCJM-PTB-347-T	4295	MLN	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTB-173-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	33768880	33768880	A	G	S21P	Missense_Mutation	M	2.3	getma.org/?cm=var&var=hg19,6,33768880,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MOTI_HUMAN&rb=1&re=56&var=S21P	GRCh37	-1	SNP	novel	unknown	0	Tcc/Ccc	NM_001040109.1,NM_002418.2,NM_001184698.1
OSCJM-PT42-193-T	4297	KMT2A	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT42-279-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	118367082	118367082	T	A	N1885K	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,11,118367082,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL1_HUMAN&rb=1828&re=1899&var=N1885K	GRCh37	1	SNP	novel	unknown	0	aaT/aaA	NA
OSCJM-PT50-575-T	4298	MLLT1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	6230705	6230705	C	A	C99F	Missense_Mutation	L	0.95	getma.org/?cm=var&var=hg19,19,6230705,C,A&fts=all	getma.org/pdb.php?prot=ENL_HUMAN&from=29&to=112&var=C99F	getma.org/?cm=msa&ty=f&p=ENL_HUMAN&rb=29&re=112&var=C99F	GRCh37	-1	SNP	novel	unknown	0	tGc/tTc	NM_005934.3
OSCJM-PT22-229-T	4308	TRPM1	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT22-321-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	31359284	31359284	T	G	E178D	Missense_Mutation	L	1.2	getma.org/?cm=var&var=hg19,15,31359284,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TRPM1_HUMAN&rb=1&re=200&var=E178D	GRCh37	-1	SNP	novel	.	0	gaA/gaC	NM_002420.5
OSCJM-PT40-169-T	4311	MME	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT40-108-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	154860025	154860025	G	A	X365_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	NA	NM_007289.2
OSCJM-PT18-392-T	4324	MMP15	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	58071508	58071508	G	A	D99N	Missense_Mutation	M	2.325	getma.org/?cm=var&var=hg19,16,58071508,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MMP15_HUMAN&rb=48&re=106&var=D99N	GRCh37	1	SNP	novel	.	0.00001	Gac/Aac	NM_002428.2
OSCJM-PT12-478-T	4493	MT1E	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	56660831	56660831	C	G	A45G	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	gCc/gGc	NM_175617.3
OSCJM-PT46-394-T	4520	MTF1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	38280841	38280841	C	A	E743D	Missense_Mutation	L	1.065	getma.org/?cm=var&var=hg19,1,38280841,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTF1_HUMAN&rb=680&re=753&var=E743D	GRCh37	-1	SNP	novel	unknown	0	gaG/gaT	NM_005955.2
OSCJM-PT10-325-T	4534	MTM1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	149828946	149828946	C	T	R486*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,X,149828946,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_000252.2
OSCJM-PT07-43-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	1093324	1093324	G	A	G1715S	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	Ggc/Agc	NM_002457.2
OSCJM-PT13-258-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	1093066	1093066	C	A	P1629T	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	rs56365200	unknown	0.0629	Cca/Aca	NM_002457.2
OSCJM-PT12-478-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	1093204	1093204	C	A	P1675T	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	Cca/Aca	NM_002457.2
OSCJM-PT07-43-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					11	1092802	1092802	A	-	T1541Pfs*6	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.0004	Acc/cc	NM_002457.2
OSCJM-PT05-91-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PT05-46-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					11	1092802	1092802	A	-	T1541Pfs*6	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.0004	Acc/cc	NM_002457.2
OSCJM-PT12-478-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	1093072	1093072	G	C	A1631P	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	rs12575990	unknown	0.0175	Gcc/Ccc	NM_002457.2
OSCJM-PT13-258-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	1093004	1093004	C	A	P1608H	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	cCc/cAc	NM_002457.2
OSCJM-PT13-258-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	1093010	1093010	C	G	T1610S	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0.0004	aCc/aGc	NM_002457.2
OSCJM-PT13-258-T	4583	MUC2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	1093049	1093049	G	C	G1623A	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	gGc/gCc	NM_002457.2
OSCJM-PT49-537-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT49-585-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195508393	195508393	A	G	V3353A	Missense_Mutation	N	-0.55	getma.org/?cm=var&var=hg19,3,195508393,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=V3353A	GRCh37	-1	SNP	Novel	NA	0.0979	gTa/gCa	NM_018406.6
OSCJM-PT12-478-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195506303	195506303	G	T	P4050T	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,195506303,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=P4050T	GRCh37	-1	SNP	NA	NA	0.0906	Cct/Act	NM_018406.6
OSCJM-PT07-43-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	-	OSCJM-PT07-87-N	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					3	195515367	195515414	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	-	S1013_T1028del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	rs13065584;rs13060431;rs5	by1000genomes;by1000genomes	0.0771	AGCCCTTCCTCAGTATCCACAGGTCACACCACCCCTCTTCCTGTCACC/-	NM_018406.6
OSCJM-PT46-394-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195515290	195515290	C	G	S1054T	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,3,195515290,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=S1054T	GRCh37	-1	SNP	NA	NA	0.0193	aGc/aCc	NM_018406.6
OSCJM-PT46-394-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195509374	195509374	T	G	H3026P	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,195509374,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=H3026P	GRCh37	-1	SNP	rs62282479	NA	0.0003	cAt/cCt	NM_018406.6
OSCJM-PT47-449-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	OSCJM-PT47-225-N	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					3	195508442	195508537	CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	V3305_S3336del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0.002	gTATCCACAGGTCACGCCACTCCTCTTCTTGTCACCGACGCTTCCTCAGCATCCACAGGTCACGCCACCCCTCTTCATGTCACCAGCCCTTCCTCAGca/gca	NM_018406.6
OSCJM-PT40-169-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT40-108-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195513826	195513826	G	A	P1542L	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,195513826,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=P1542L	GRCh37	-1	SNP	novel	unknown	0.0114	cCt/cTt	NM_018406.6
OSCJM-PT43-201-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195515194	195515194	G	C	T1086S	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,195515194,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=T1086S	GRCh37	-1	SNP	NA	NA	0.00006	aCc/aGc	NM_018406.6
OSCJM-PT13-258-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195509052	195509052	C	G	Q3133H	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,195509052,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=Q3133H	GRCh37	-1	SNP	NA	NA	0.0004	caG/caC	NM_018406.6
OSCJM-PT05-91-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	ACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC	-	OSCJM-PT05-46-N	ACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC	ACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					3	195508479	195508574	ACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC	-	D3293_G3324del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0.0155	GACACCACCCCTCTTCTTGTCACCGAGACTTCCTCAGTATCCACAGGTCACGCCACTCCTCTTCTTGTCACCGACGCTTCCTCAGCATCCACAGGT/-	NM_018406.6
OSCJM-PT05-91-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195509353	195509353	G	A	A3033V	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,195509353,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=A3033V	GRCh37	-1	SNP	novel	unknown	0.0031	gCa/gTa	NM_018406.6
OSCJM-PT05-91-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195506914	195506914	G	A	P3846L	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,3,195506914,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=P3846L	GRCh37	-1	SNP	novel	unknown	0.0044	cCt/cTt	NM_018406.6
OSCJM-PT05-91-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	A	C	OSCJM-PT05-46-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195506917	195506917	A	C	I3845S	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,3,195506917,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=I3845S	GRCh37	-1	SNP	novel	unknown	0.0044	aTc/aGc	NM_018406.6
OSCJM-PT07-43-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195506101	195506101	T	A	D4117V	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,3,195506101,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=D4117V	GRCh37	-1	SNP	novel	unknown	0	gAc/gTc	NM_018406.6
OSCJM-PT07-43-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195509861	195509861	A	G	S2864P	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,3,195509861,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=S2864P	GRCh37	-1	SNP	novel	unknown	0.0026	Tct/Cct	NM_018406.6
OSCJM-PT07-43-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195506483	195506483	T	G	T3990P	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,3,195506483,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=T3990P	GRCh37	-1	SNP	novel	unknown	0.0451	Act/Cct	NM_018406.6
OSCJM-PT12-478-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT12-103-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195508510	195508510	A	T	L3314H	Missense_Mutation	N	-0.345	getma.org/?cm=var&var=hg19,3,195508510,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=L3314H	GRCh37	-1	SNP	novel	unknown	0.1498	cTt/cAt	NM_018406.6
OSCJM-PT40-169-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195509555	195509555	T	G	T2966P	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,195509555,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=T2966P	GRCh37	-1	SNP	novel	unknown	0	Act/Cct	NM_018406.6
OSCJM-PT49-537-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	CTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	OSCJM-PT49-585-N	CTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	CTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					3	195508490	195508537	CTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA	-	V3305_S3320del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0.4184	gTATCCACAGGTCACGCCACTCCTCTTCTTGTCACCGACGCTTCCTCAGca/gca	NM_018406.6
OSCJM-PT50-575-T	4585	MUC4	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	195511379	195511379	C	G	A2358P	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,3,195511379,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=E9PDY6_HUMAN&rb=971&re=4249&var=A2358P	GRCh37	-1	SNP	novel	unknown	0.0069	Gct/Cct	NM_018406.6
OSCJM-PT35-37-T	4607	MYBPC3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	47361245	47361245	C	T	G675E	Missense_Mutation	M	3.4	getma.org/?cm=var&var=hg19,11,47361245,C,T&fts=all	getma.org/pdb.php?prot=MYPC3_HUMAN&from=652&to=767&var=G674E	getma.org/?cm=msa&ty=f&p=MYPC3_HUMAN&rb=652&re=767&var=G674E	GRCh37	-1	SNP	novel	.	0	gGg/gAg	NM_000256.3
OSCJM-PT45-364-T	4619	MYH1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	10402081	10402081	C	T	R1348Q	Missense_Mutation	M	2.65	getma.org/?cm=var&var=hg19,17,10402081,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYH1_HUMAN&rb=1072&re=1930&var=R1348Q	GRCh37	-1	SNP	rs146728905	NA	0.00007	cGg/cAg	NM_005963.3
OSCJM-PT03-388-T	4620	MYH2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	10424643	10424643	C	T	R1927Q	Missense_Mutation	H	4.11	getma.org/?cm=var&var=hg19,17,10424643,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYH2_HUMAN&rb=1074&re=1932&var=R1927Q	GRCh37	-1	SNP	rs34161789	byCluster;byFrequency	0.004	cGg/cAg	NM_017534.5
OSCJM-PT05-91-T	4622	MYH4	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	10369860	10369860	G	A	A68V	Missense_Mutation	L	1.385	getma.org/?cm=var&var=hg19,17,10369860,G,A&fts=all	getma.org/pdb.php?prot=MYH4_HUMAN&from=35&to=76&var=A68V	getma.org/?cm=msa&ty=f&p=MYH4_HUMAN&rb=35&re=76&var=A68V	GRCh37	-1	SNP	novel	unknown	0	gCt/gTt	NM_017533.2
OSCJM-PT10-325-T	4629	MYH11	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	15880488	15880488	G	A	T211M	Missense_Mutation	N	0.27	getma.org/?cm=var&var=hg19,16,15880488,G,A&fts=all	getma.org/pdb.php?prot=MYH11_HUMAN&from=87&to=771&var=T211M	getma.org/?cm=msa&ty=f&p=MYH11_HUMAN&rb=87&re=771&var=T211M	GRCh37	-1	SNP	NA	NA	0.00002	aCg/aTg	NM_002474.2
OSCJM-PT32-489-T	4640	MYO1A	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	57431381	57431381	C	G	G669A	Missense_Mutation	N	0.015	getma.org/?cm=var&var=hg19,12,57431381,C,G&fts=all	getma.org/pdb.php?prot=MYO1A_HUMAN&from=10&to=681&var=G669A	getma.org/?cm=msa&ty=f&p=MYO1A_HUMAN&rb=10&re=681&var=G669A	GRCh37	-1	SNP	NA	NA	0	gGg/gCg	NM_005379.3
OSCJM-PT46-394-T	4641	MYO1C	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	1374541	1374541	T	A	K704M	Missense_Mutation	M	2.91	getma.org/?cm=var&var=hg19,17,1374541,T,A&fts=all	getma.org/pdb.php?prot=MYO1C_HUMAN&from=48&to=718&var=K704M	getma.org/?cm=msa&ty=f&p=MYO1C_HUMAN&rb=48&re=718&var=K704M	GRCh37	-1	SNP	novel	unknown	0	aAg/aTg	NM_001080779.1
OSCJM-PT03-388-T	4644	MYO5A	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	52681545	52681545	C	G	D520H	Missense_Mutation	M	2.82	getma.org/?cm=var&var=hg19,15,52681545,C,G&fts=all	getma.org/pdb.php?prot=MYO5A_HUMAN&from=71&to=751&var=D520H	getma.org/?cm=msa&ty=f&p=MYO5A_HUMAN&rb=71&re=751&var=D520H	GRCh37	-1	SNP	novel	unknown	0	Gat/Cat	NM_000259.3
OSCJM-PT43-201-T	4644	MYO5A	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	52643488	52643488	G	A	S1271F	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,15,52643488,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYO5A_HUMAN&rb=1229&re=1350&var=S1271F	GRCh37	-1	SNP	novel	unknown	0	tCt/tTt	NM_000259.3
OSCJM-PT50-575-T	4649	MYO9A	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	72227684	72227684	G	A	L840L	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	ctC/ctT	NM_006901.3
OSCJM-PT10-325-T	4665	NAB2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	57486916	57486916	G	A	R405H	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,12,57486916,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NAB2_HUMAN&rb=367&re=420&var=R405H	GRCh37	1	SNP	NA	NA	0	cGc/cAc	NM_005967.3
OSCJM-PT10-325-T	4673	NAP1L1	hgsc.bcm.edu	SOLID	Somatic	AT	-	OSCJM-PT10-70-N	AT	AT	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					12	76453948	76453949	AT	-	Y106Cfs*9	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	.	0	tAT/t	NM_004537.4,NM_139207.2
OSCJM-PT32-489-T	4677	NARS	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	55283091	55283091	C	A	W70C	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,18,55283091,C,A&fts=all	getma.org/pdb.php?prot=SYNC_HUMAN&from=1&to=127&var=W70C	getma.org/?cm=msa&ty=f&p=SYNC_HUMAN&rb=1&re=127&var=W70C	GRCh37	-1	SNP	NA	NA	0	tgG/tgT	NM_004539.3
OSCJM-PT50-575-T	4677	NARS	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	55276654	55276654	G	A	L172F	Missense_Mutation	L	1.63	getma.org/?cm=var&var=hg19,18,55276654,G,A&fts=all	getma.org/pdb.php?prot=SYNC_HUMAN&from=128&to=208&var=L172F	getma.org/?cm=msa&ty=f&p=SYNC_HUMAN&rb=128&re=208&var=L172F	GRCh37	-1	SNP	novel	unknown	0	Ctc/Ttc	NM_004539.3
OSCJM-PT48-530-T	4683	NBN	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	90967655	90967655	G	C	S418*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,8,90967655,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tCa/tGa	NM_002485.4
OSCJM-PT15-391-T	4684	NCAM1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	113130889	113130889	G	A	E649K	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	Gag/Aag	NM_181351.4,NM_001242607.1
OSCJM-PT32-489-T	4686	NCBP1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	100403139	100403139	C	G	S33C	Missense_Mutation	M	2.85	getma.org/?cm=var&var=hg19,9,100403139,C,G&fts=all	getma.org/pdb.php?prot=NCBP1_HUMAN&from=28&to=240&var=S33C	getma.org/?cm=msa&ty=f&p=NCBP1_HUMAN&rb=28&re=240&var=S33C	GRCh37	1	SNP	NA	NA	0	tCt/tGt	NM_002486.4
OSCJM-PT49-537-T	4690	NCK1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	136664959	136664959	C	T	P254L	Missense_Mutation	L	1.665	getma.org/?cm=var&var=hg19,3,136664959,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NCK1_HUMAN&rb=245&re=281&var=P254L	GRCh37	1	SNP	novel	unknown	0	cCa/cTa	NM_006153.4
OSCJM-PT32-489-T	4703	NEB	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	152397296	152397296	G	T	A5200D	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,2,152397296,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NEBU_HUMAN&rb=5136&re=5246&var=A5200D	GRCh37	-1	SNP	NA	NA	0	gCc/gAc	NA
OSCJM-PT42-193-T	4744	NEFH	hgsc.bcm.edu	Illumina	Somatic	-	CCCCTGAGAAGGCCAAGT	OSCJM-PT42-279-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	29885589	29885590	NA	CCCCTGAGAAGGCCAAGT	A652_K657dup	In_Frame_Ins	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	NA	INS	novel	[Not Available]	0	tcc/tCCCCTGAGAAGGCCAAGTcc	NM_021076.3
OSCJM-PT50-575-T	4744	NEFH	hgsc.bcm.edu	Illumina	Somatic	-	AGTCCCCTGAGAAGGCCA	OSCJM-PT50-81-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	29885586	29885587	NA	AGTCCCCTGAGAAGGCCA	A652_K657dup	In_Frame_Ins	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	NA	INS	novel	[Not Available]	0	aag/aAGTCCCCTGAGAAGGCCAag	NM_021076.3
OSCJM-PT12-478-T	4744	NEFH	hgsc.bcm.edu	Illumina	Somatic	AGGCCAAGTCCCCAGAGAAGGAAG	-	OSCJM-PT12-103-N	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	29885581	29885604	AGGCCAAGTCCCCAGAGAAGGAAG	-	E658_K665del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.0003	aAGGCCAAGTCCCCAGAGAAGGAAGag/aag	NM_021076.3
OSCJM-PT41-180-T	4744	NEFH	hgsc.bcm.edu	Illumina	Somatic	-	AAGTCCCCTGAGAAGGCC	OSCJM-PT41-594-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	29885567	29885568	-	AAGTCCCCTGAGAAGGCC	A652_K657dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	unknown	0.6495	-/AAGTCCCCTGAGAAGGCC	NM_021076.3
OSCJM-PT45-364-T	4744	NEFH	hgsc.bcm.edu	Illumina	Somatic	-	AAGTCCCCTGAGAAGGCC	OSCJM-PT45-246-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	29885567	29885568	-	AAGTCCCCTGAGAAGGCC	A652_K657dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	unknown	0.6495	-/AAGTCCCCTGAGAAGGCC	NM_021076.3
OSCJM-PT15-391-T	4744	NEFH	hgsc.bcm.edu	Illumina	Somatic	-	AAGTCCCCTGAGAAGGCC	OSCJM-PT15-284-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	29885567	29885568	-	AAGTCCCCTGAGAAGGCC	A652_K657dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	unknown	0.6495	-/AAGTCCCCTGAGAAGGCC	NM_021076.3
OSCJM-PTD-578-T	4744	NEFH	hgsc.bcm.edu	Illumina	Somatic	-	AAGTCCCCTGAGAAGGCC	OSCJM-PTD-439-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	29885567	29885568	-	AAGTCCCCTGAGAAGGCC	A652_K657dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	unknown	0.6495	-/AAGTCCCCTGAGAAGGCC	NM_021076.3
OSCJM-PT07-43-T	4753	NELL2	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	45170851	45170851	C	G	D246H	Missense_Mutation	M	2.2	getma.org/?cm=var&var=hg19,12,45170851,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NELL2_HUMAN&rb=30&re=258&var=D246H	GRCh37	-1	SNP	NA	NA	0	Gat/Cat	NM_001145108.1
OSCJM-PT14-353-T	4753	NELL2	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	45108433	45108433	C	G	K362N	Missense_Mutation	L	1.845	getma.org/?cm=var&var=hg19,12,45108433,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NELL2_HUMAN&rb=332&re=396&var=K362N	GRCh37	-1	SNP	novel	.	0	aaG/aaC	NM_001145108.1
OSCJM-PT46-394-T	4771	NF2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					22	30054234	30054234	T	C	V219A	Missense_Mutation	M	3.31	getma.org/?cm=var&var=hg19,22,30054234,T,C&fts=all	getma.org/pdb.php?prot=MERL_HUMAN&from=105&to=222&var=V219A	getma.org/?cm=msa&ty=f&p=MERL_HUMAN&rb=105&re=222&var=V219A	GRCh37	1	SNP	novel	unknown	0	gTg/gCg	NM_000268.3,NM_016418.5,NM_181832.2
OSCJM-PT10-325-T	4803	NGF	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	115829133	115829133	C	T	R95H	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,1,115829133,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NGF_HUMAN&rb=1&re=124&var=R95H	GRCh37	-1	SNP	NA	NA	0.0003	cGt/cAt	NM_002506.2
OSCJM-PT42-193-T	4820	NKTR	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT42-279-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	42680575	42680575	G	A	D1127N	Missense_Mutation	M	2.89	getma.org/?cm=var&var=hg19,3,42680575,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NKTR_HUMAN&rb=715&re=1460&var=D1127N	GRCh37	1	SNP	novel	unknown	0	Gac/Aac	NM_005385.3
OSCJM-PT04-447-T	4849	CNOT3	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT04-206-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	54649744	54649744	T	C	S268P	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,19,54649744,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNOT3_HUMAN&rb=241&re=509&var=S268P	GRCh37	1	SNP	novel	unknown	0	Tct/Cct	NM_014516.3
OSCJM-PT12-478-T	4851	NOTCH1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					9	139411828	139411828	C	A	G484V	Missense_Mutation	H	4.39	getma.org/?cm=var&var=hg19,9,139411828,C,A&fts=all	getma.org/pdb.php?prot=NOTC1_HUMAN&from=452&to=491&var=G484V	getma.org/?cm=msa&ty=f&p=NOTC1_HUMAN&rb=452&re=491&var=G484V	GRCh37	-1	SNP	NA	NA	0	gGt/gTt	NM_017617.3
OSCJM-PT11-385-T	4851	NOTCH1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	139393696	139393696	G	A	R1984*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,9,139393696,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cga/Tga	NM_017617.3
OSCJM-PT15-391-T	4851	NOTCH1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	139412272	139412272	G	A	S458L	Missense_Mutation	M	2.37	getma.org/?cm=var&var=hg19,9,139412272,G,A&fts=all	getma.org/pdb.php?prot=NOTC1_HUMAN&from=452&to=491&var=S458L	getma.org/?cm=msa&ty=f&p=NOTC1_HUMAN&rb=452&re=491&var=S458L	GRCh37	-1	SNP	novel	unknown	0.00002	tCg/tTg	NM_017617.3
OSCJM-PT20-600-T	4851	NOTCH1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					9	139413274	139413274	G	A	Q290*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,9,139413274,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	.	0	Cag/Tag	NM_017617.3
OSCJM-PT01-166-T	4852	NPY	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT01-583-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	24324879	24324879	T	C	L7P	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	rs16139	byCluster;byFrequency;byHapMap	0.03	cTg/cCg	NM_000905.3
OSCJM-PT43-201-T	4853	NOTCH2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	120484158	120484158	C	A	C991F	Missense_Mutation	H	4.795	getma.org/?cm=var&var=hg19,1,120484158,C,A&fts=all	getma.org/pdb.php?prot=NOTC2_HUMAN&from=991&to=1021&var=C991F	getma.org/?cm=msa&ty=f&p=NOTC2_HUMAN&rb=991&re=1021&var=C991F	GRCh37	-1	SNP	novel	unknown	0	tGc/tTc	NM_024408.3
OSCJM-PT43-201-T	4853	NOTCH2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	120510178	120510178	C	A	C444F	Missense_Mutation	H	4.655	getma.org/?cm=var&var=hg19,1,120510178,C,A&fts=all	getma.org/pdb.php?prot=NOTC2_HUMAN&from=415&to=454&var=C444F	getma.org/?cm=msa&ty=f&p=NOTC2_HUMAN&rb=415&re=454&var=C444F	GRCh37	-1	SNP	novel	unknown	0	tGt/tTt	NM_024408.3
OSCJM-PTC-139-T	4857	NOVA1	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PTC-295-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	27064643	27064643	G	T	L85M	Missense_Mutation	L	1.505	getma.org/?cm=var&var=hg19,14,27064643,G,T&fts=all	getma.org/pdb.php?prot=NOVA1_HUMAN&from=52&to=117&var=L85M	getma.org/?cm=msa&ty=f&p=NOVA1_HUMAN&rb=52&re=117&var=L85M	GRCh37	-1	SNP	NA	NA	0	Ctg/Atg	NM_002515.2
OSCJM-PT05-91-T	4861	NPAS1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	47543709	47543709	G	A	D324N	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,19,47543709,G,A&fts=all	getma.org/pdb.php?prot=NPAS1_HUMAN&from=315&to=401&var=D324N	getma.org/?cm=msa&ty=f&p=NPAS1_HUMAN&rb=315&re=401&var=D324N	GRCh37	1	SNP	NA	NA	0.00009	Gac/Aac	NM_002517.2
OSCJM-PT33-288-T	4883	NPR3	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	32739137	32739137	G	A	X353_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0.00001	NA	NM_001204375.1,NM_000908.3
OSCJM-PT21-238-T	4898	NRDC	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT21-231-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	52256276	52256276	C	T	G1101R	Missense_Mutation	M	2.505	getma.org/?cm=var&var=hg19,1,52256276,C,T&fts=all	getma.org/pdb.php?prot=NRDC_HUMAN&from=1021&to=1150&var=G1032R	getma.org/?cm=msa&ty=f&p=NRDC_HUMAN&rb=1021&re=1150&var=G1032R	GRCh37	-1	SNP	novel	.	0	Ggg/Agg	NM_002525.2
OSCJM-PT20-600-T	4943	TBC1D25	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	48418002	48418002	G	A	V236M	Missense_Mutation	M	2.165	getma.org/?cm=var&var=hg19,X,48418002,G,A&fts=all	getma.org/pdb.php?prot=TBC25_HUMAN&from=231&to=435&var=V236M	getma.org/?cm=msa&ty=f&p=TBC25_HUMAN&rb=231&re=435&var=V236M	GRCh37	1	SNP	novel	.	0	Gtg/Atg	NM_002536.2
OSCJM-PTC-139-T	4967	OGDH	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PTC-295-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	44737043	44737043	A	G	N709S	Missense_Mutation	L	1.52	getma.org/?cm=var&var=hg19,7,44737043,A,G&fts=all	getma.org/pdb.php?prot=ODO1_HUMAN&from=649&to=866&var=N709S	getma.org/?cm=msa&ty=f&p=ODO1_HUMAN&rb=649&re=866&var=N709S	GRCh37	1	SNP	NA	NA	0.00002	aAt/aGt	NM_002541.3
OSCJM-PTB-347-T	4999	ORC2	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PTB-173-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	201822125	201822125	T	A	Q79H	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,2,201822125,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ORC2_HUMAN&rb=32&re=80&var=Q79H	GRCh37	-1	SNP	NA	NA	0	caA/caT	NM_006190.4
OSCJM-PT15-391-T	5009	OTC	hgsc.bcm.edu	Cross	Somatic	C	G	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					X	38280312	38280312	C	G	Q348E	Missense_Mutation	L	1.465	getma.org/?cm=var&var=hg19,X,38280312,C,G&fts=all	getma.org/pdb.php?prot=OTC_HUMAN&from=342&to=354&var=Q348E	getma.org/?cm=msa&ty=f&p=OTC_HUMAN&rb=312&re=354&var=Q348E	GRCh37	1	SNP	novel	unknown	0	Cag/Gag	NM_000531.5
OSCJM-PT03-388-T	5026	P2RX5	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					17	3594277	3594277	G	-	N112Tfs*36	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0.6687	ccC/cc	NM_001204519.1,NM_002561.3
OSCJM-PT13-258-T	5064	PALM	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT13-257-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	731144	731144	A	G	T107A	Missense_Mutation	N	-0.205	getma.org/?cm=var&var=hg19,19,731144,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PALM_HUMAN&rb=70&re=387&var=T107A	GRCh37	1	SNP	rs1050457	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.4745	Act/Gct	NM_002579.2
OSCJM-PT20-600-T	5066	PAM	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	102342701	102342701	C	A	T667K	Missense_Mutation	N	0.43	getma.org/?cm=var&var=hg19,5,102342701,C,A&fts=all	getma.org/pdb.php?prot=AMD_HUMAN&from=660&to=682&var=T667K	getma.org/?cm=msa&ty=f&p=AMD_HUMAN&rb=630&re=712&var=T667K	GRCh37	1	SNP	novel	.	0	aCa/aAa	NM_001177306.1,NM_000919.3,NM_138766.2
OSCJM-PT10-325-T	5071	PRKN	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	162394349	162394349	G	A	T240M	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,6,162394349,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PRKN2_HUMAN&rb=74&re=273&var=T240M	GRCh37	-1	SNP	NA	NA	0.0003	aCg/aTg	NM_004562.2
OSCJM-PT48-530-T	5077	PAX3	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	223084917	223084917	G	T	P372H	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,2,223084917,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PAX3_HUMAN&rb=346&re=391&var=P372H	GRCh37	-1	SNP	novel	unknown	0	cCt/cAt	NM_181457.3
OSCJM-PT47-449-T	5083	PAX9	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT47-225-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	37135753	37135753	G	C	A240P	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,14,37135753,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PAX9_HUMAN&rb=129&re=328&var=A240P	GRCh37	1	SNP	rs4904210	byCluster;byFrequency	0.4347	Gcg/Ccg	NA
OSCJM-PTB-347-T	5090	PBX3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	128723110	128723110	C	T	P331S	Missense_Mutation	M	2.14	getma.org/?cm=var&var=hg19,9,128723110,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PBX3_HUMAN&rb=296&re=434&var=P331S	GRCh37	1	SNP	NA	NA	0	Ccc/Tcc	NM_006195.5
OSCJM-PT50-575-T	5091	PC	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	66616585	66616585	C	T	V1108M	Missense_Mutation	M	2.48	getma.org/?cm=var&var=hg19,11,66616585,C,T&fts=all	getma.org/pdb.php?prot=PYC_HUMAN&from=1063&to=1109&var=V1108M	getma.org/?cm=msa&ty=f&p=PYC_HUMAN&rb=1063&re=1109&var=V1108M	GRCh37	-1	SNP	novel	unknown	0	Gtg/Atg	NM_022172.2
OSCJM-PT46-394-T	5101	PCDH9	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	67801335	67801335	G	A	A413V	Missense_Mutation	N	0.565	getma.org/?cm=var&var=hg19,13,67801335,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCDH9_HUMAN&rb=370&re=460&var=A413V	GRCh37	-1	SNP	NA	NA	0.00008	gCg/gTg	NA
OSCJM-PT49-537-T	5101	PCDH9	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT49-585-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	67799962	67799962	T	C	R871G	Missense_Mutation	N	0.235	getma.org/?cm=var&var=hg19,13,67799962,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCDH9_HUMAN&rb=777&re=1002&var=R871G	GRCh37	-1	SNP	novel	unknown	0.00002	Aga/Gga	NA
OSCJM-PT45-364-T	5106	PCK2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	24567485	24567485	C	T	R117W	Missense_Mutation	M	2.31	getma.org/?cm=var&var=hg19,14,24567485,C,T&fts=all	getma.org/pdb.php?prot=PCKGM_HUMAN&from=46&to=640&var=R117W	getma.org/?cm=msa&ty=f&p=PCKGM_HUMAN&rb=46&re=640&var=R117W	GRCh37	1	SNP	novel	unknown	0.00002	Cgg/Tgg	NM_004563.2
OSCJM-PT42-193-T	5155	PDGFB	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	39627784	39627784	C	T	R100H	Missense_Mutation	M	2.98	getma.org/?cm=var&var=hg19,22,39627784,C,T&fts=all	getma.org/pdb.php?prot=PDGFB_HUMAN&from=97&to=180&var=R100H	getma.org/?cm=msa&ty=f&p=PDGFB_HUMAN&rb=97&re=180&var=R100H	GRCh37	-1	SNP	novel	unknown	0	cGc/cAc	NM_002608.2
OSCJM-PT32-489-T	5159	PDGFRB	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	149503837	149503837	G	T	L667M	Missense_Mutation	L	1.73	getma.org/?cm=var&var=hg19,5,149503837,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PGFRB_HUMAN&rb=600&re=958&var=L667M	GRCh37	-1	SNP	NA	NA	0	Ctg/Atg	NM_002609.3
OSCJM-PT05-91-T	5166	PDK4	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT05-46-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	95225509	95225509	A	G	S33P	Missense_Mutation	M	3.27	getma.org/?cm=var&var=hg19,7,95225509,A,G&fts=all	getma.org/pdb.php?prot=PDK4_HUMAN&from=33&to=196&var=S33P	getma.org/?cm=msa&ty=f&p=PDK4_HUMAN&rb=33&re=196&var=S33P	GRCh37	-1	SNP	novel	unknown	0	Tcc/Ccc	NM_002612.3
OSCJM-PT03-388-T	5173	PDYN	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	1961039	1961039	C	T	R232H	Missense_Mutation	M	2.775	getma.org/?cm=var&var=hg19,20,1961039,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PDYN_HUMAN&rb=70&re=254&var=R232H	GRCh37	-1	SNP	NA	NA	0.00002	cGc/cAc	NM_024411.4,NM_001190898.2,NM_001190892.1
OSCJM-PTD-578-T	5178	PEG3	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	57325894	57325894	T	G	N1306H	Missense_Mutation	L	1.125	getma.org/?cm=var&var=hg19,19,57325894,T,G&fts=all	getma.org/pdb.php?prot=PEG3_HUMAN&from=1304&to=1331&var=N1306H	getma.org/?cm=msa&ty=f&p=PEG3_HUMAN&rb=1274&re=1361&var=N1306H	GRCh37	-1	SNP	NA	NA	0	Aat/Cat	NM_006210.2
OSCJM-PT03-388-T	5213	PFKM	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	48534623	48534623	A	T	H437L	Missense_Mutation	L	1.775	getma.org/?cm=var&var=hg19,12,48534623,A,T&fts=all	getma.org/pdb.php?prot=K6PF_HUMAN&from=401&to=688&var=H437L	getma.org/?cm=msa&ty=f&p=K6PF_HUMAN&rb=401&re=688&var=H437L	GRCh37	1	SNP	NA	NA	0	cAt/cTt	NM_001166687.1
OSCJM-PT04-447-T	5214	PFKP	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT04-206-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	3178006	3178006	A	G	E734G	Missense_Mutation	L	1.44	getma.org/?cm=var&var=hg19,10,3178006,A,G&fts=all	getma.org/pdb.php?prot=K6PP_HUMAN&from=700&to=784&var=E734G	getma.org/?cm=msa&ty=f&p=K6PP_HUMAN&rb=700&re=784&var=E734G	GRCh37	1	SNP	NA	NA	0	gAg/gGg	NM_002627.4
OSCJM-PT15-391-T	5230	PGK1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	77372818	77372818	G	A	E143K	Missense_Mutation	N	0.54	getma.org/?cm=var&var=hg19,X,77372818,G,A&fts=all	getma.org/pdb.php?prot=PGK1_HUMAN&from=8&to=406&var=E143K	getma.org/?cm=msa&ty=f&p=PGK1_HUMAN&rb=8&re=406&var=E143K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_000291.3
OSCJM-PTB-347-T	5243	ABCB1	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PTB-173-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	87229448	87229448	T	G	K18T	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,7,87229448,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MDR1_HUMAN&rb=1&re=50&var=K18T	GRCh37	-1	SNP	NA	NA	0	aAa/aCa	NM_000927.4
OSCJM-PT41-180-T	5257	PHKB	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT41-594-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	47694612	47694612	A	G	H693R	Missense_Mutation	L	1.12	getma.org/?cm=var&var=hg19,16,47694612,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=KPBB_HUMAN&rb=47&re=878&var=H693R	GRCh37	1	SNP	novel	unknown	0	cAt/cGt	NM_000293.2
OSCJM-PT14-353-T	5276	SERPINI2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	167185002	167185002	G	A	L107F	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,3,167185002,G,A&fts=all	getma.org/pdb.php?prot=SPI2_HUMAN&from=24&to=392&var=L107F	getma.org/?cm=msa&ty=f&p=SPI2_HUMAN&rb=24&re=392&var=L107F	GRCh37	-1	SNP	novel	.	0	Ctt/Ttt	NA
OSCJM-PTD-578-T	5290	PIK3CA	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	178936082	178936082	G	A	E542K	Missense_Mutation	L	1.27	getma.org/?cm=var&var=hg19,3,178936082,G,A&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=519&to=704&var=E542K	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=519&re=704&var=E542K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_006218.2
OSCJM-PT43-201-T	5290	PIK3CA	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT43-326-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	178952085	178952085	A	G	H1047R	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,3,178952085,A,G&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=H1047R	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=H1047R	GRCh37	1	SNP	NA	NA	0	cAt/cGt	NM_006218.2
OSCJM-PT48-530-T	5290	PIK3CA	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT48-60-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	178952085	178952085	A	G	H1047R	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,3,178952085,A,G&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=H1047R	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=H1047R	GRCh37	1	SNP	NA	NA	0	cAt/cGt	NM_006218.2
OSCJM-PT10-325-T	5290	PIK3CA	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT10-70-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					3	178952085	178952085	A	T	H1047L	Missense_Mutation	N	-1.325	getma.org/?cm=var&var=hg19,3,178952085,A,T&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=H1047L	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=H1047L	GRCh37	1	SNP	NA	NA	0	cAt/cTt	NM_006218.2
OSCJM-PT01-166-T	5290	PIK3CA	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	178916944	178916944	A	G	K111E	Missense_Mutation	M	2.42	getma.org/?cm=var&var=hg19,3,178916944,A,G&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=109&to=172&var=K111E	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=109&re=172&var=K111E	GRCh37	1	SNP	NA	NA	0	Aag/Gag	NM_006218.2
OSCJM-PT32-489-T	5290	PIK3CA	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					3	178916946	178916946	G	C	K111N	Missense_Mutation	M	2.42	getma.org/?cm=var&var=hg19,3,178916946,G,C&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=109&to=172&var=K111N	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=109&re=172&var=K111N	GRCh37	1	SNP	NA	NA	0	aaG/aaC	NM_006218.2
OSCJM-PT01-166-T	5290	PIK3CA	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	178952099	178952099	A	G	T1052A	Missense_Mutation	L	1.49	getma.org/?cm=var&var=hg19,3,178952099,A,G&fts=all	getma.org/pdb.php?prot=PK3CA_HUMAN&from=797&to=1068&var=T1052A	getma.org/?cm=msa&ty=f&p=PK3CA_HUMAN&rb=797&re=1068&var=T1052A	GRCh37	1	SNP	novel	unknown	0	Aca/Gca	NM_006218.2
OSCJM-PT03-388-T	5310	PKD1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	2160948	2160948	G	A	P1407L	Missense_Mutation	N	0.75	getma.org/?cm=var&var=hg19,16,2160948,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PKD1_HUMAN&rb=1384&re=1456&var=P1407L	GRCh37	-1	SNP	novel	unknown	0.0002	cCg/cTg	NM_001009944.2
OSCJM-PT01-166-T	5314	PKHD1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	51907774	51907774	G	A	R994W	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,6,51907774,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PKHD1_HUMAN&rb=931&re=1010&var=R994W	GRCh37	-1	SNP	NA	NA	0.00001	Cgg/Tgg	NM_138694.3
OSCJM-PT20-600-T	5314	PKHD1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	51927453	51927453	G	A	R328*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,51927453,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	.	0.00005	Cga/Tga	NM_138694.3
OSCJM-PT41-180-T	5319	PLA2G1B	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	120762760	120762760	G	C	S100C	Missense_Mutation	M	2.9	getma.org/?cm=var&var=hg19,12,120762760,G,C&fts=all	getma.org/pdb.php?prot=PA21B_HUMAN&from=23&to=146&var=S100C	getma.org/?cm=msa&ty=f&p=PA21B_HUMAN&rb=23&re=146&var=S100C	GRCh37	-1	SNP	novel	unknown	0	tCt/tGt	NM_000928.2
OSCJM-PT42-193-T	5326	PLAGL2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT42-279-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	30784632	30784632	G	C	L372V	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,20,30784632,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLAL2_HUMAN&rb=324&re=397&var=L372V	GRCh37	-1	SNP	novel	unknown	0	Ctc/Gtc	NM_002657.3
OSCJM-PT43-201-T	5326	PLAGL2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT43-326-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					20	30784508	30784508	T	C	D413G	Missense_Mutation	M	1.905	getma.org/?cm=var&var=hg19,20,30784508,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLAL2_HUMAN&rb=398&re=494&var=D413G	GRCh37	-1	SNP	novel	unknown	0	gAc/gGc	NM_002657.3
OSCJM-PT49-537-T	5332	PLCB4	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	9417769	9417769	G	T	A900S	Missense_Mutation	N	-0.28	getma.org/?cm=var&var=hg19,20,9417769,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLCB4_HUMAN&rb=787&re=908&var=A900S	GRCh37	1	SNP	novel	unknown	0.00004	Gcc/Tcc	NM_182797.2
OSCJM-PT45-364-T	5334	PLCL1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	199011631	199011631	G	A	R1078H	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,2,199011631,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLCL1_HUMAN&rb=1014&re=1095&var=R1078H	GRCh37	1	SNP	NA	NA	0.00004	cGc/cAc	NM_006226.3
OSCJM-PT28-298-T	5335	PLCG1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT28-437-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	39802798	39802798	C	T	T1226M	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,20,39802798,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLCG1_HUMAN&rb=1178&re=1290&var=T1226M	GRCh37	1	SNP	novel	.	0.00004	aCg/aTg	NM_182811.1
OSCJM-PT43-201-T	5336	PLCG2	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT43-326-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	81965169	81965169	T	G	D883E	Missense_Mutation	N	0.41	getma.org/?cm=var&var=hg19,16,81965169,T,G&fts=all	getma.org/pdb.php?prot=PLCG2_HUMAN&from=822&to=928&var=D883E	getma.org/?cm=msa&ty=f&p=PLCG2_HUMAN&rb=822&re=928&var=D883E	GRCh37	1	SNP	novel	unknown	0	gaT/gaG	NM_002661.3
OSCJM-PT40-169-T	5337	PLD1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	171394576	171394576	C	T	A682T	Missense_Mutation	M	2.03	getma.org/?cm=var&var=hg19,3,171394576,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLD1_HUMAN&rb=487&re=686&var=A682T	GRCh37	-1	SNP	NA	NA	0	Gcc/Acc	NM_002662.4
OSCJM-PT03-388-T	5347	PLK1	hgsc.bcm.edu	SOLID	Somatic	-	T	OSCJM-PT03-66-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					16	23691464	23691465	-	T	L157Sfs*30	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	.	0	-/T	NM_005030.3
OSCJM-PT22-229-T	5361	PLXNA1	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT22-321-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	126707801	126707801	A	G	Y122C	Missense_Mutation	M	3.07	getma.org/?cm=var&var=hg19,3,126707801,A,G&fts=all	getma.org/pdb.php?prot=PLXA1_HUMAN&from=51&to=495&var=Y122C	getma.org/?cm=msa&ty=f&p=PLXA1_HUMAN&rb=51&re=495&var=Y122C	GRCh37	1	SNP	novel	.	0	tAt/tGt	NM_032242.3
OSCJM-PT36-331-T	5362	PLXNA2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	208218426	208218426	G	A	Q1209*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,208218426,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	.	0	Cag/Tag	NM_025179.3
OSCJM-PT10-325-T	5394	EXOSC10	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	11140823	11140823	G	C	Y528*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,11140823,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	taC/taG	NM_001001998.1
OSCJM-PT04-447-T	5409	PNMT	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT04-206-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	37825990	37825990	A	G	E104G	Missense_Mutation	M	2.455	getma.org/?cm=var&var=hg19,17,37825990,A,G&fts=all	getma.org/pdb.php?prot=PNMT_HUMAN&from=14&to=279&var=E104G	getma.org/?cm=msa&ty=f&p=PNMT_HUMAN&rb=14&re=279&var=E104G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_002686.4
OSCJM-PT40-169-T	5420	PODXL	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	131194197	131194197	C	T	S317N	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,7,131194197,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PODXL_HUMAN&rb=1&re=321&var=S317N	GRCh37	-1	SNP	NA	NA	0	aGc/aAc	NA
OSCJM-PT03-388-T	5424	POLD1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	50916686	50916686	G	A	V720I	Missense_Mutation	L	1.67	getma.org/?cm=var&var=hg19,19,50916686,G,A&fts=all	getma.org/pdb.php?prot=DPOD1_HUMAN&from=550&to=990&var=V720I	getma.org/?cm=msa&ty=f&p=DPOD1_HUMAN&rb=550&re=990&var=V720I	GRCh37	1	SNP	NA	NA	0	Gtc/Atc	NM_002691.3,NM_001256849.1
OSCJM-PT32-489-T	5426	POLE	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	133249289	133249289	T	C	E537G	Missense_Mutation	H	3.725	getma.org/?cm=var&var=hg19,12,133249289,T,C&fts=all	getma.org/pdb.php?prot=DPOE1_HUMAN&from=428&to=615&var=E537G	getma.org/?cm=msa&ty=f&p=DPOE1_HUMAN&rb=428&re=615&var=E537G	GRCh37	-1	SNP	NA	NA	0	gAg/gGg	NM_006231.2
OSCJM-PT46-394-T	5431	POLR2B	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	57881676	57881676	G	T	M603I	Missense_Mutation	N	-0.995	getma.org/?cm=var&var=hg19,4,57881676,G,T&fts=all	getma.org/pdb.php?prot=RPB2_HUMAN&from=567&to=630&var=M603I	getma.org/?cm=msa&ty=f&p=RPB2_HUMAN&rb=567&re=630&var=M603I	GRCh37	1	SNP	novel	unknown	0	atG/atT	NM_000938.1
OSCJM-PT13-258-T	5442	POLRMT	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT13-257-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	622336	622336	T	G	E555A	Missense_Mutation	N	-1.445	getma.org/?cm=var&var=hg19,19,622336,T,G&fts=all	getma.org/pdb.php?prot=RPOM_HUMAN&from=330&to=559&var=E555A	getma.org/?cm=msa&ty=f&p=RPOM_HUMAN&rb=330&re=559&var=E555A	GRCh37	-1	SNP	rs2238549	by2Hit2Allele;byCluster;byFrequency	0.6218	gAg/gCg	NM_005035.3
OSCJM-PT43-201-T	5465	PPARA	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	46614211	46614211	C	A	R141S	Missense_Mutation	L	1.57	getma.org/?cm=var&var=hg19,22,46614211,C,A&fts=all	getma.org/pdb.php?prot=PPARA_HUMAN&from=100&to=168&var=R141S	getma.org/?cm=msa&ty=f&p=PPARA_HUMAN&rb=100&re=168&var=R141S	GRCh37	1	SNP	novel	unknown	0	Cgc/Agc	NM_005036.4,NM_001001928.2
OSCJM-PT48-530-T	5493	PPL	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	4949064	4949064	C	T	E276K	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,16,4949064,C,T&fts=all	getma.org/pdb.php?prot=PEPL_HUMAN&from=201&to=400&var=E276K	getma.org/?cm=msa&ty=f&p=PEPL_HUMAN&rb=201&re=400&var=E276K	GRCh37	-1	SNP	novel	unknown	0.00002	Gag/Aag	NM_002705.4
OSCJM-PT50-575-T	5499	PPP1CA	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	67166584	67166584	G	C	P192A	Missense_Mutation	H	3.555	getma.org/?cm=var&var=hg19,11,67166584,G,C&fts=all	getma.org/pdb.php?prot=PP1A_HUMAN&from=57&to=252&var=P192A	getma.org/?cm=msa&ty=f&p=PP1A_HUMAN&rb=57&re=252&var=P192A	GRCh37	-1	SNP	novel	unknown	0	Ccc/Gcc	NM_001008709.1,NM_002708.3
OSCJM-PT14-353-T	5520	PPP2R2A	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	26221249	26221249	C	T	P272L	Missense_Mutation	M	2.48	getma.org/?cm=var&var=hg19,8,26221249,C,T&fts=all	getma.org/pdb.php?prot=2ABA_HUMAN&from=201&to=400&var=P272L	getma.org/?cm=msa&ty=f&p=2ABA_HUMAN&rb=201&re=400&var=P272L	GRCh37	1	SNP	novel	.	0	cCt/cTt	NM_002717.3
OSCJM-PT40-169-T	5521	PPP2R2B	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	146077680	146077680	C	T	E124K	Missense_Mutation	M	3.435	getma.org/?cm=var&var=hg19,5,146077680,C,T&fts=all	getma.org/pdb.php?prot=2ABB_HUMAN&from=1&to=200&var=E66K	getma.org/?cm=msa&ty=f&p=2ABB_HUMAN&rb=1&re=200&var=E66K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NA
OSCJM-PT33-288-T	5526	PPP2R5B	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	64695293	64695293	G	A	R139Q	Missense_Mutation	H	4.04	getma.org/?cm=var&var=hg19,11,64695293,G,A&fts=all	getma.org/pdb.php?prot=2A5B_HUMAN&from=61&to=469&var=R139Q	getma.org/?cm=msa&ty=f&p=2A5B_HUMAN&rb=61&re=469&var=R139Q	GRCh37	1	SNP	novel	.	0	cGg/cAg	NM_006244.3
OSCJM-PT42-193-T	5554	PRH1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT42-279-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	11034887	11034887	G	A	P150S	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Cct/Tct	NM_006250.3
OSCJM-PTD-578-T	5577	PRKAR2B	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					7	106781346	106781346	G	A	E179K	Missense_Mutation	M	2.845	getma.org/?cm=var&var=hg19,7,106781346,G,A&fts=all	getma.org/pdb.php?prot=KAP3_HUMAN&from=172&to=261&var=E179K	getma.org/?cm=msa&ty=f&p=KAP3_HUMAN&rb=172&re=261&var=E179K	GRCh37	1	SNP	NA	NA	0	Gag/Aag	NM_002736.2
OSCJM-PT01-166-T	5578	PRKCA	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	64785012	64785012	A	G	D590G	Missense_Mutation	L	1.155	getma.org/?cm=var&var=hg19,17,64785012,A,G&fts=all	getma.org/pdb.php?prot=KPCA_HUMAN&from=339&to=597&var=D590G	getma.org/?cm=msa&ty=f&p=KPCA_HUMAN&rb=339&re=597&var=D590G	GRCh37	1	SNP	novel	unknown	0	gAc/gGc	NM_002737.2
OSCJM-PT50-575-T	5584	PRKCI	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT50-81-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	169999047	169999047	A	G	S326G	Missense_Mutation	N	0.57	getma.org/?cm=var&var=hg19,3,169999047,A,G&fts=all	getma.org/pdb.php?prot=KPCI_HUMAN&from=254&to=522&var=S326G	getma.org/?cm=msa&ty=f&p=KPCI_HUMAN&rb=254&re=522&var=S326G	GRCh37	1	SNP	novel	unknown	0	Agc/Ggc	NM_002740.5
OSCJM-PT11-385-T	5591	PRKDC	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	48852134	48852134	G	A	R364C	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0.00003	Cgt/Tgt	NM_006904.6
OSCJM-PT46-394-T	5591	PRKDC	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	48761848	48761848	A	T	F2382I	Missense_Mutation	L	1.6	getma.org/?cm=var&var=hg19,8,48761848,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PRKDC_HUMAN&rb=2211&re=2410&var=F2383I	GRCh37	-1	SNP	novel	unknown	0	Ttc/Atc	NM_006904.6
OSCJM-PT46-394-T	5592	PRKG1	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	53814267	53814267	T	A	Y235*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,10,53814267,T,A&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	taT/taA	NM_001098512.2
OSCJM-PT10-325-T	5594	MAPK1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	22127167	22127167	C	T	D321N	Missense_Mutation	H	3.59	getma.org/?cm=var&var=hg19,22,22127167,C,T&fts=all	getma.org/pdb.php?prot=MK01_HUMAN&from=314&to=360&var=D321N	getma.org/?cm=msa&ty=f&p=MK01_HUMAN&rb=314&re=360&var=D321N	GRCh37	-1	SNP	NA	NA	0	Gac/Aac	NM_002745.4
OSCJM-PTD-578-T	5612	THAP12	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	76063019	76063019	T	A	H392L	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,11,76063019,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=P52K_HUMAN&rb=343&re=542&var=H392L	GRCh37	-1	SNP	NA	NA	0	cAt/cTt	NM_004705.2
OSCJM-PT01-166-T	5641	LGMN	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	93172970	93172970	C	T	R350H	Missense_Mutation	L	1.395	getma.org/?cm=var&var=hg19,14,93172970,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LGMN_HUMAN&rb=287&re=433&var=R350H	GRCh37	-1	SNP	NA	NA	0.00003	cGt/cAt	NM_005606.6
OSCJM-PTD-578-T	5644	PRSS1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	142458409	142458409	C	T	A15V	Missense_Mutation	L	1.375	getma.org/?cm=var&var=hg19,7,142458409,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TRY1_HUMAN&rb=1&re=53&var=A15V	GRCh37	1	SNP	rs147886164	by1000genomes	0	gCt/gTt	NM_002769.4
OSCJM-PT03-388-T	5649	RELN	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	103237078	103237078	G	T	L1122M	Missense_Mutation	L	1.65	getma.org/?cm=var&var=hg19,7,103237078,G,T&fts=all	getma.org/pdb.php?prot=RELN_HUMAN&from=972&to=1171&var=L1122M	getma.org/?cm=msa&ty=f&p=RELN_HUMAN&rb=972&re=1171&var=L1122M	GRCh37	-1	SNP	NA	NA	0	Ctg/Atg	NM_005045.3
OSCJM-PT37-513-T	5649	RELN	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	103202320	103202320	A	T	L1764Q	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,7,103202320,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RELN_HUMAN&rb=1764&re=1795&var=L1764Q	GRCh37	-1	SNP	novel	.	0	cTg/cAg	NM_005045.3
OSCJM-PT15-391-T	5651	TMPRSS15	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					21	19744606	19744606	G	A	P190S	Missense_Mutation	L	1.025	getma.org/?cm=var&var=hg19,21,19744606,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ENTK_HUMAN&rb=182&re=223&var=P190S	GRCh37	-1	SNP	NA	NA	0	Cct/Tct	NM_002772.2
OSCJM-PT01-166-T	5657	PRTN3	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	844020	844020	G	A	V119I	Missense_Mutation	N	-1.45	getma.org/?cm=var&var=hg19,19,844020,G,A&fts=all	getma.org/pdb.php?prot=PRTN3_HUMAN&from=28&to=243&var=V119I	getma.org/?cm=msa&ty=f&p=PRTN3_HUMAN&rb=28&re=243&var=V119I	GRCh37	1	SNP	rs351111	byCluster;byFrequency;byHapMap;byOtherPop	0.5159	Gtt/Att	NM_002777.3
OSCJM-PT01-166-T	5662	PSD	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	104172204	104172204	A	G	L561P	Missense_Mutation	M	2.81	getma.org/?cm=var&var=hg19,10,104172204,A,G&fts=all	getma.org/pdb.php?prot=PSD1_HUMAN&from=529&to=708&var=L561P	getma.org/?cm=msa&ty=f&p=PSD1_HUMAN&rb=529&re=708&var=L561P	GRCh37	-1	SNP	novel	unknown	0	cTg/cCg	NM_001270966.1,NM_002779.4
OSCJM-PT03-388-T	5682	PSMA1	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	14526779	14526779	C	A	D251Y	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,11,14526779,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PSA1_HUMAN&rb=216&re=263&var=D251Y	GRCh37	-1	SNP	NA	NA	0	Gat/Tat	NM_002786.3
OSCJM-PT30-592-T	5708	PSMD2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT30-587-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	184022129	184022129	G	A	V497I	Missense_Mutation	L	1.835	getma.org/?cm=var&var=hg19,3,184022129,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PSMD2_HUMAN&rb=480&re=514&var=V497I	GRCh37	1	SNP	novel	.	0.00003	Gtc/Atc	NM_002808.4
OSCJM-PTA-367-T	5717	PSMD11	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	30771600	30771600	G	C	R20P	Missense_Mutation	N	-0.555	getma.org/?cm=var&var=hg19,17,30771600,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PSD11_HUMAN&rb=1&re=200&var=R20P	GRCh37	1	SNP	novel	.	0	cGg/cCg	NM_001270482.1,NM_002815.3
OSCJM-PT01-166-T	5719	PSMD13	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	237087	237087	A	G	N13S	Missense_Mutation	N	-1.015	getma.org/?cm=var&var=hg19,11,237087,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PSD13_HUMAN&rb=1&re=200&var=N13S	GRCh37	1	SNP	rs1045288	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.7809	aAc/aGc	NM_002817.3
OSCJM-PTC-139-T	5747	PTK2	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PTC-295-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	141754770	141754770	T	A	S539C	Missense_Mutation	M	3.405	getma.org/?cm=var&var=hg19,8,141754770,T,A&fts=all	getma.org/pdb.php?prot=FAK1_HUMAN&from=422&to=676&var=S539C	getma.org/?cm=msa&ty=f&p=FAK1_HUMAN&rb=422&re=676&var=S539C	GRCh37	-1	SNP	NA	NA	0	Agc/Tgc	NM_005607.4
OSCJM-PTA-367-T	5764	PTN	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	136938277	136938277	C	G	E75Q	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,7,136938277,C,G&fts=all	getma.org/pdb.php?prot=PTN_HUMAN&from=34&to=95&var=E75Q	getma.org/?cm=msa&ty=f&p=PTN_HUMAN&rb=34&re=95&var=E75Q	GRCh37	-1	SNP	NA	NA	0	Gag/Cag	NM_002825.5
OSCJM-PT20-600-T	5770	PTPN1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	49195811	49195811	C	T	S270F	Missense_Mutation	M	3.05	getma.org/?cm=var&var=hg19,20,49195811,C,T&fts=all	getma.org/pdb.php?prot=PTN1_HUMAN&from=40&to=276&var=S270F	getma.org/?cm=msa&ty=f&p=PTN1_HUMAN&rb=40&re=276&var=S270F	GRCh37	1	SNP	novel	.	0	tCc/tTc	NM_001278618.1,NM_002827.3
OSCJM-PT01-166-T	5786	PTPRA	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	2969023	2969023	C	T	T214I	Missense_Mutation	N	0.755	getma.org/?cm=var&var=hg19,20,2969023,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PTPRA_HUMAN&rb=201&re=264&var=T214I	GRCh37	1	SNP	NA	NA	0	aCc/aTc	NM_002836.3
OSCJM-PT49-537-T	5792	PTPRF	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	44086800	44086800	C	T	T1851I	Missense_Mutation	M	2.055	getma.org/?cm=var&var=hg19,1,44086800,C,T&fts=all	getma.org/pdb.php?prot=PTPRF_HUMAN&from=1664&to=1897&var=T1851I	getma.org/?cm=msa&ty=f&p=PTPRF_HUMAN&rb=1664&re=1897&var=T1851I	GRCh37	1	SNP	novel	unknown	0	aCt/aTt	NM_002840.3
OSCJM-PT43-201-T	5797	PTPRM	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	7955306	7955306	C	A	H342Q	Missense_Mutation	M	2.635	getma.org/?cm=var&var=hg19,18,7955306,C,A&fts=all	getma.org/pdb.php?prot=PTPRM_HUMAN&from=283&to=366&var=H342Q	getma.org/?cm=msa&ty=f&p=PTPRM_HUMAN&rb=283&re=366&var=H342Q	GRCh37	1	SNP	novel	unknown	0	caC/caA	NM_002845.3
OSCJM-PT03-388-T	5800	PTPRO	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	15702047	15702047	C	A	S775Y	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,12,15702047,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PTPRO_HUMAN&rb=724&re=805&var=S775Y	GRCh37	1	SNP	NA	NA	0	tCc/tAc	NM_030667.2
OSCJM-PTA-367-T	5825	ABCD3	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					1	94953518	94953518	G	A	R379H	Missense_Mutation	M	3.215	getma.org/?cm=var&var=hg19,1,94953518,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABCD3_HUMAN&rb=339&re=479&var=R379H	GRCh37	1	SNP	NA	NA	0	cGt/cAt	NM_002858.3
OSCJM-PT10-325-T	5858	PZP	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	9307427	9307427	C	T	V1187I	Missense_Mutation	N	0.095	getma.org/?cm=var&var=hg19,12,9307427,C,T&fts=all	getma.org/pdb.php?prot=PZP_HUMAN&from=1016&to=1272&var=V1187I	getma.org/?cm=msa&ty=f&p=PZP_HUMAN&rb=1016&re=1272&var=V1187I	GRCh37	-1	SNP	NA	NA	0.00007	Gtc/Atc	NM_002864.2
OSCJM-PT12-478-T	5894	RAF1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	12626123	12626123	G	C	L613V	Missense_Mutation	M	2.195	getma.org/?cm=var&var=hg19,3,12626123,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RAF1_HUMAN&rb=607&re=648&var=L613V	GRCh37	-1	SNP	NA	NA	0	Cta/Gta	NM_002880.3
OSCJM-PTB-347-T	5921	RASA1	hgsc.bcm.edu	SOLID	Somatic	-	A	OSCJM-PTB-173-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					5	86675570	86675571	-	A	N838Kfs*2	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	.	0	gaa/gAaa	NM_002890.2
OSCJM-PTB-347-T	5934	RBL2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	53504516	53504516	G	A	V823I	Missense_Mutation	N	-0.345	getma.org/?cm=var&var=hg19,16,53504516,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RBL2_HUMAN&rb=780&re=863&var=V823I	GRCh37	1	SNP	NA	NA	0	Gta/Ata	NM_005611.3
OSCJM-PT15-391-T	5965	RECQL	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	21639513	21639513	G	T	T134K	Missense_Mutation	H	4.475	getma.org/?cm=var&var=hg19,12,21639513,G,T&fts=all	getma.org/pdb.php?prot=RECQ1_HUMAN&from=93&to=264&var=T134K	getma.org/?cm=msa&ty=f&p=RECQ1_HUMAN&rb=93&re=264&var=T134K	GRCh37	-1	SNP	novel	unknown	0	aCa/aAa	NA
OSCJM-PT05-91-T	5967	REG1A	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	79349971	79349971	G	A	R109H	Missense_Mutation	L	1.895	getma.org/?cm=var&var=hg19,2,79349971,G,A&fts=all	getma.org/pdb.php?prot=REG1A_HUMAN&from=53&to=164&var=R109H	getma.org/?cm=msa&ty=f&p=REG1A_HUMAN&rb=53&re=164&var=R109H	GRCh37	1	SNP	NA	NA	0.0001	cGc/cAc	NM_002909.4
OSCJM-PT03-388-T	5978	REST	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	57777406	57777406	C	T	S201F	Missense_Mutation	L	1.085	getma.org/?cm=var&var=hg19,4,57777406,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=REST_HUMAN&rb=135&re=215&var=S201F	GRCh37	1	SNP	NA	NA	0	tCt/tTt	NM_005612.4,NM_001193508.1
OSCJM-PT38-234-T	5980	REV3L	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT38-446-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	111709250	111709250	A	T	F301I	Missense_Mutation	M	2.05	getma.org/?cm=var&var=hg19,6,111709250,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DPOLZ_HUMAN&rb=204&re=403&var=F301I	GRCh37	-1	SNP	novel	.	0	Ttt/Att	NA
OSCJM-PT41-180-T	5980	REV3L	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	111694078	111694078	C	G	G1827A	Missense_Mutation	M	1.905	getma.org/?cm=var&var=hg19,6,111694078,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=DPOLZ_HUMAN&rb=1027&re=1865&var=G1827A	GRCh37	-1	SNP	novel	unknown	0	gGt/gCt	NA
OSCJM-PT32-489-T	5984	RFC4	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	186518927	186518927	T	G	K63N	Missense_Mutation	M	2.18	getma.org/?cm=var&var=hg19,3,186518927,T,G&fts=all	getma.org/pdb.php?prot=RFC4_HUMAN&from=1&to=73&var=K63N	getma.org/?cm=msa&ty=f&p=RFC4_HUMAN&rb=1&re=73&var=K63N	GRCh37	-1	SNP	NA	NA	0	aaA/aaC	NM_002916.3
OSCJM-PT27-562-T	5988	RFPL1	hgsc.bcm.edu	SOLID	Somatic	TCC	-	OSCJM-PT27-497-N	TCC	TCC	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	29837567	29837569	TCC	-	L139del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	.	0.3532	tTCCtc/ttc	NM_021026.2
OSCJM-PT04-447-T	5992	RFX4	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT04-206-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	107113755	107113755	C	A	H386N	Missense_Mutation	L	1.01	getma.org/?cm=var&var=hg19,12,107113755,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RFX4_HUMAN&rb=327&re=526&var=H386N	GRCh37	1	SNP	NA	NA	0	Cat/Aat	NM_213594.2
OSCJM-PTA-367-T	5998	RGS3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	116267802	116267802	C	T	S326S	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	rs142637936	NA	0.0002	tcC/tcT	NA
OSCJM-PT36-331-T	6041	RNASEL	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	182554655	182554655	G	C	H429Q	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,1,182554655,G,C&fts=all	getma.org/pdb.php?prot=RN5A_HUMAN&from=366&to=523&var=H429Q	getma.org/?cm=msa&ty=f&p=RN5A_HUMAN&rb=366&re=523&var=H429Q	GRCh37	-1	SNP	novel	.	0	caC/caG	NM_021133.3
OSCJM-PT05-91-T	6046	BRD2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	32943921	32943921	C	G	S195R	Missense_Mutation	N	-0.18	getma.org/?cm=var&var=hg19,6,32943921,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=BRD2_HUMAN&rb=169&re=352&var=S195R	GRCh37	1	SNP	novel	unknown	0	agC/agG	NM_005104.3
OSCJM-PT13-258-T	6051	RNPEP	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	201965280	201965280	G	A	R248Q	Missense_Mutation	M	2.33	getma.org/?cm=var&var=hg19,1,201965280,G,A&fts=all	getma.org/pdb.php?prot=AMPB_HUMAN&from=31&to=417&var=R248Q	getma.org/?cm=msa&ty=f&p=AMPB_HUMAN&rb=31&re=417&var=R248Q	GRCh37	1	SNP	novel	.	0.00002	cGg/cAg	NM_020216.3
OSCJM-PT03-388-T	6059	ABCE1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	146041182	146041182	G	T	E341*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,4,146041182,G,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Gaa/Taa	NM_002940.2,NM_001040876.1
OSCJM-PT03-388-T	6091	ROBO1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	78719367	78719367	C	T	C476Y	Missense_Mutation	H	4.66	getma.org/?cm=var&var=hg19,3,78719367,C,T&fts=all	getma.org/pdb.php?prot=ROBO1_HUMAN&from=455&to=542&var=C476Y	getma.org/?cm=msa&ty=f&p=ROBO1_HUMAN&rb=455&re=542&var=C476Y	GRCh37	-1	SNP	novel	unknown	0	tGt/tAt	NM_002941.3
OSCJM-PT03-388-T	6092	ROBO2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	77147197	77147197	C	T	R32W	Missense_Mutation	L	1.635	getma.org/?cm=var&var=hg19,3,77147197,C,T&fts=all	getma.org/pdb.php?prot=ROBO2_HUMAN&from=31&to=128&var=R32W	getma.org/?cm=msa&ty=f&p=ROBO2_HUMAN&rb=31&re=128&var=R32W	GRCh37	1	SNP	novel	unknown	0	Cgg/Tgg	NM_002942.4
OSCJM-PT40-169-T	6093	ROCK1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					18	18534911	18534911	T	C	H1229R	Missense_Mutation	M	2.12	getma.org/?cm=var&var=hg19,18,18534911,T,C&fts=all	getma.org/pdb.php?prot=ROCK1_HUMAN&from=1119&to=1316&var=H1229R	getma.org/?cm=msa&ty=f&p=ROCK1_HUMAN&rb=1119&re=1316&var=H1229R	GRCh37	-1	SNP	NA	NA	0	cAt/cGt	NM_005406.2
OSCJM-PT21-238-T	6101	RP1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT21-231-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	55539057	55539057	G	A	R872H	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,8,55539057,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RP1_HUMAN&rb=755&re=1200&var=R872H	GRCh37	1	SNP	rs444772;COSM1457540	Cosmic	0.271	cGt/cAt	NM_006269.1
OSCJM-PT15-391-T	6165	RPL35A	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT15-284-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	197678032	197678032	T	A	L5Q	Missense_Mutation	H	3.94	getma.org/?cm=var&var=hg19,3,197678032,T,A&fts=all	getma.org/pdb.php?prot=RL35A_HUMAN&from=5&to=104&var=L5Q	getma.org/?cm=msa&ty=f&p=RL35A_HUMAN&rb=5&re=104&var=L5Q	GRCh37	1	SNP	novel	unknown	0	cTg/cAg	NA
OSCJM-PT48-530-T	6208	RPS14	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT48-60-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	149826413	149826413	A	T	L88Q	Missense_Mutation	M	2.1	getma.org/?cm=var&var=hg19,5,149826413,A,T&fts=all	getma.org/pdb.php?prot=RS14_HUMAN&from=29&to=147&var=L88Q	getma.org/?cm=msa&ty=f&p=RS14_HUMAN&rb=29&re=147&var=L88Q	GRCh37	-1	SNP	novel	unknown	0	cTg/cAg	NA
OSCJM-PT41-180-T	6247	RS1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	18660245	18660245	G	A	T185M	Missense_Mutation	M	2.06	getma.org/?cm=var&var=hg19,X,18660245,G,A&fts=all	getma.org/pdb.php?prot=XLRS1_HUMAN&from=80&to=216&var=T185M	getma.org/?cm=msa&ty=f&p=XLRS1_HUMAN&rb=80&re=216&var=T185M	GRCh37	-1	SNP	rs61753173	unknown	0	aCg/aTg	NM_000330.3
OSCJM-PT01-166-T	6256	RXRA	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	137328348	137328348	G	A	R426H	Missense_Mutation	H	3.59	getma.org/?cm=var&var=hg19,9,137328348,G,A&fts=all	getma.org/pdb.php?prot=RXRA_HUMAN&from=251&to=442&var=R426H	getma.org/?cm=msa&ty=f&p=RXRA_HUMAN&rb=251&re=442&var=R426H	GRCh37	1	SNP	NA	NA	0	cGc/cAc	NM_002957.4
OSCJM-PT32-489-T	6262	RYR2	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	237802492	237802492	G	T	S2369I	Missense_Mutation	L	1.24	getma.org/?cm=var&var=hg19,1,237802492,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RYR2_HUMAN&rb=2333&re=2532&var=S2369I	GRCh37	1	SNP	NA	NA	0	aGt/aTt	NM_001035.2
OSCJM-PT07-43-T	6262	RYR2	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	237819123	237819123	A	T	K2656N	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,1,237819123,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RYR2_HUMAN&rb=2533&re=2699&var=K2656N	GRCh37	1	SNP	novel	unknown	0	aaA/aaT	NM_001035.2
OSCJM-PT20-600-T	6262	RYR2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	237550644	237550644	G	A	V214M	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,1,237550644,G,A&fts=all	getma.org/pdb.php?prot=RYR2_HUMAN&from=9&to=223&var=V214M	getma.org/?cm=msa&ty=f&p=RYR2_HUMAN&rb=9&re=223&var=V214M	GRCh37	1	SNP	novel	.	0	Gtg/Atg	NM_001035.2
OSCJM-PT37-513-T	6262	RYR2	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	237758798	237758798	C	A	S1479R	Missense_Mutation	L	1.73	getma.org/?cm=var&var=hg19,1,237758798,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RYR2_HUMAN&rb=1423&re=1561&var=S1479R	GRCh37	1	SNP	novel	.	0	agC/agA	NM_001035.2
OSCJM-PT50-575-T	6262	RYR2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	237936919	237936919	G	A	V3916I	Missense_Mutation	L	0.955	getma.org/?cm=var&var=hg19,1,237936919,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RYR2_HUMAN&rb=3826&re=3959&var=V3916I	GRCh37	1	SNP	novel	unknown	0	Gtc/Atc	NM_001035.2
OSCJM-PT40-169-T	6263	RYR3	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	33873829	33873829	C	A	L520I	Missense_Mutation	M	2.85	getma.org/?cm=var&var=hg19,15,33873829,C,A&fts=all	getma.org/pdb.php?prot=RYR3_HUMAN&from=438&to=642&var=L520I	getma.org/?cm=msa&ty=f&p=RYR3_HUMAN&rb=438&re=642&var=L520I	GRCh37	1	SNP	novel	unknown	0	Ctc/Atc	NM_001036.3
OSCJM-PT40-169-T	6263	RYR3	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	33873830	33873830	T	G	L520R	Missense_Mutation	M	2.85	getma.org/?cm=var&var=hg19,15,33873830,T,G&fts=all	getma.org/pdb.php?prot=RYR3_HUMAN&from=438&to=642&var=L520R	getma.org/?cm=msa&ty=f&p=RYR3_HUMAN&rb=438&re=642&var=L520R	GRCh37	1	SNP	novel	unknown	0	cTc/cGc	NM_001036.3
OSCJM-PT03-388-T	6323	SCN1A	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	166848897	166848897	C	T	V1630M	Missense_Mutation	M	2.35	getma.org/?cm=var&var=hg19,2,166848897,C,T&fts=all	getma.org/pdb.php?prot=SCN1A_HUMAN&from=1575&to=1785&var=V1630M	getma.org/?cm=msa&ty=f&p=SCN1A_HUMAN&rb=1575&re=1785&var=V1630M	GRCh37	-1	SNP	novel	unknown	0	Gtg/Atg	NA
OSCJM-PT32-489-T	6328	SCN3A	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	166003416	166003416	G	A	R502*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,166003416,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cga/Tga	NM_001081677.1
OSCJM-PT42-193-T	6383	SDC2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT42-279-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	97621685	97621685	G	C	R172T	Missense_Mutation	M	2.25	getma.org/?cm=var&var=hg19,8,97621685,G,C&fts=all	getma.org/pdb.php?prot=SDC2_HUMAN&from=115&to=199&var=R172T	getma.org/?cm=msa&ty=f&p=SDC2_HUMAN&rb=115&re=199&var=R172T	GRCh37	1	SNP	novel	unknown	0	aGa/aCa	NM_002998.3
OSCJM-PT41-180-T	6389	SDHA	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	240560	240560	G	A	R507K	Missense_Mutation	L	1.05	getma.org/?cm=var&var=hg19,5,240560,G,A&fts=all	getma.org/pdb.php?prot=DHSA_HUMAN&from=458&to=511&var=R507K	getma.org/?cm=msa&ty=f&p=DHSA_HUMAN&rb=458&re=511&var=R507K	GRCh37	1	SNP	novel	unknown	0	aGa/aAa	NM_004168.2
OSCJM-PT49-537-T	6401	SELE	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	169695870	169695870	G	T	L575I	Missense_Mutation	L	1.825	getma.org/?cm=var&var=hg19,1,169695870,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LYAM2_HUMAN&rb=548&re=610&var=L575I	GRCh37	-1	SNP	novel	unknown	0	Ctc/Atc	NM_000450.2
OSCJM-PT32-489-T	6403	SELP	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	169576215	169576215	G	C	N497K	Missense_Mutation	L	1.015	getma.org/?cm=var&var=hg19,1,169576215,G,C&fts=all	getma.org/pdb.php?prot=LYAM3_HUMAN&from=448&to=505&var=N497K	getma.org/?cm=msa&ty=f&p=LYAM3_HUMAN&rb=448&re=505&var=N497K	GRCh37	-1	SNP	NA	NA	0	aaC/aaG	NM_003005.3
OSCJM-PT18-392-T	6431	SRSF6	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	42089169	42089169	G	C	R202T	Missense_Mutation	M	2.215	getma.org/?cm=var&var=hg19,20,42089169,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SRSF6_HUMAN&rb=178&re=309&var=R202T	GRCh37	1	SNP	novel	.	0	aGa/aCa	NM_006275.5
OSCJM-PT37-513-T	6456	SH3GL2	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	17791250	17791250	T	A	S216T	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,9,17791250,T,A&fts=all	getma.org/pdb.php?prot=SH3G2_HUMAN&from=6&to=242&var=S216T	getma.org/?cm=msa&ty=f&p=SH3G2_HUMAN&rb=6&re=242&var=S216T	GRCh37	1	SNP	novel	.	0	Tct/Act	NM_003026.2
OSCJM-PT49-537-T	6457	SH3GL3	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT49-585-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	84257475	84257475	T	C	S264P	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,15,84257475,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SH3G3_HUMAN&rb=243&re=290&var=S264P	GRCh37	1	SNP	novel	unknown	0	Tct/Cct	NM_003027.3
OSCJM-PTD-578-T	6476	SI	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	164735778	164735778	A	T	L1167*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,3,164735778,A,T&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tTa/tAa	NM_001041.3
OSCJM-PT15-391-T	6505	SLC1A1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	4544617	4544617	G	C	E48Q	Missense_Mutation	L	0.815	getma.org/?cm=var&var=hg19,9,4544617,G,C&fts=all	getma.org/pdb.php?prot=EAA3_HUMAN&from=19&to=465&var=E48Q	getma.org/?cm=msa&ty=f&p=EAA3_HUMAN&rb=19&re=465&var=E48Q	GRCh37	1	SNP	novel	unknown	0.00004	Gag/Cag	NM_004170.5
OSCJM-PT41-180-T	6523	SLC5A1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	32506080	32506080	G	C	E625D	Missense_Mutation	M	2.495	getma.org/?cm=var&var=hg19,22,32506080,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SC5A1_HUMAN&rb=493&re=664&var=E625D	GRCh37	1	SNP	novel	unknown	0	gaG/gaC	NM_000343.3
OSCJM-PT01-166-T	6527	SLC5A4	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					22	32614659	32614659	C	T	G608S	Missense_Mutation	M	3.295	getma.org/?cm=var&var=hg19,22,32614659,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SC5A4_HUMAN&rb=493&re=659&var=G608S	GRCh37	-1	SNP	rs150790454	NA	0.00001	Ggt/Agt	NM_014227.2
OSCJM-PT18-392-T	6530	SLC6A2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	55731937	55731937	G	A	K463K	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	.	0.00001	aaG/aaA	NM_001043.3
OSCJM-PT50-575-T	6540	SLC6A13	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	333208	333208	G	A	L421F	Missense_Mutation	M	1.925	getma.org/?cm=var&var=hg19,12,333208,G,A&fts=all	getma.org/pdb.php?prot=S6A13_HUMAN&from=32&to=556&var=L421F	getma.org/?cm=msa&ty=f&p=S6A13_HUMAN&rb=32&re=556&var=L421F	GRCh37	-1	SNP	NA	NA	0	Ctt/Ttt	NM_016615.4
OSCJM-PT12-478-T	6541	SLC7A1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT12-103-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					13	30110312	30110312	A	G	V5A	Missense_Mutation	N	-0.735	getma.org/?cm=var&var=hg19,13,30110312,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CTR1_HUMAN&rb=1&re=31&var=V5A	GRCh37	-1	SNP	novel	unknown	0	gTc/gCc	NM_003045.4
OSCJM-PT03-388-T	6546	SLC8A1	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	40655627	40655627	C	G	Q598H	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,2,40655627,C,G&fts=all	getma.org/pdb.php?prot=NAC1_HUMAN&from=527&to=627&var=Q598H	getma.org/?cm=msa&ty=f&p=NAC1_HUMAN&rb=527&re=627&var=Q598H	GRCh37	-1	SNP	novel	unknown	0	caG/caC	NM_021097.2
OSCJM-PT20-600-T	6571	SLC18A2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	119029586	119029586	G	A	M397I	Missense_Mutation	M	2.265	getma.org/?cm=var&var=hg19,10,119029586,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=VMAT2_HUMAN&rb=22&re=422&var=M397I	GRCh37	1	SNP	novel	.	0	atG/atA	NM_003054.4
OSCJM-PT32-489-T	6579	SLCO1A2	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	21467564	21467564	C	G	R85T	Missense_Mutation	H	3.665	getma.org/?cm=var&var=hg19,12,21467564,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SO1A2_HUMAN&rb=19&re=598&var=R85T	GRCh37	-1	SNP	NA	NA	0	aGa/aCa	NM_134431.3
OSCJM-PT32-489-T	6594	SMARCA1	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	128599869	128599869	T	G	E923D	Missense_Mutation	H	3.595	getma.org/?cm=var&var=hg19,X,128599869,T,G&fts=all	getma.org/pdb.php?prot=SMCA1_HUMAN&from=912&to=1028&var=E923D	getma.org/?cm=msa&ty=f&p=SMCA1_HUMAN&rb=912&re=1028&var=E923D	GRCh37	-1	SNP	NA	NA	0	gaA/gaC	NM_003069.3
OSCJM-PT19-481-T	6601	SMARCC2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT19-3-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	56583193	56583193	G	A	A18V	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,12,56583193,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMRC2_HUMAN&rb=1&re=200&var=A18V	GRCh37	-1	SNP	NA	NA	0.00006	gCg/gTg	NM_003075.3
OSCJM-PT45-364-T	6601	SMARCC2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	56574856	56574856	C	T	R329H	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,12,56574856,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMRC2_HUMAN&rb=201&re=400&var=R329H	GRCh37	-1	SNP	novel	unknown	0	cGt/cAt	NM_003075.3
OSCJM-PT32-489-T	6653	SORL1	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	121444948	121444948	A	T	X1113_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_003105.5
OSCJM-PT49-537-T	6675	UAP1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	162557364	162557364	G	A	A312T	Missense_Mutation	M	2.66	getma.org/?cm=var&var=hg19,1,162557364,G,A&fts=all	getma.org/pdb.php?prot=UAP1_HUMAN&from=44&to=472&var=A312T	getma.org/?cm=msa&ty=f&p=UAP1_HUMAN&rb=44&re=472&var=A312T	GRCh37	1	SNP	novel	unknown	0	Gct/Act	NA
OSCJM-PT47-449-T	6687	SPG7	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT47-225-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	89613067	89613067	A	G	E484G	Missense_Mutation	N	-0.865	getma.org/?cm=var&var=hg19,16,89613067,A,G&fts=all	getma.org/pdb.php?prot=SPG7_HUMAN&from=480&to=540&var=E484G	getma.org/?cm=msa&ty=f&p=SPG7_HUMAN&rb=480&re=540&var=E484G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_003119.2
OSCJM-PT03-388-T	6708	SPTA1	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	158644377	158644377	C	G	D401H	Missense_Mutation	M	3.19	getma.org/?cm=var&var=hg19,1,158644377,C,G&fts=all	getma.org/pdb.php?prot=SPTA1_HUMAN&from=370&to=474&var=D401H	getma.org/?cm=msa&ty=f&p=SPTA1_HUMAN&rb=370&re=474&var=D401H	GRCh37	-1	SNP	novel	unknown	0	Gat/Cat	NM_003126.2
OSCJM-PT12-478-T	6712	SPTBN2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	66473176	66473176	G	A	R596C	Missense_Mutation	M	2.34	getma.org/?cm=var&var=hg19,11,66473176,G,A&fts=all	getma.org/pdb.php?prot=SPTN2_HUMAN&from=531&to=639&var=R596C	getma.org/?cm=msa&ty=f&p=SPTN2_HUMAN&rb=531&re=639&var=R596C	GRCh37	-1	SNP	novel	unknown	0.00006	Cgc/Tgc	NM_006946.2
OSCJM-PT33-288-T	6712	SPTBN2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	66483446	66483446	C	T	R55Q	Missense_Mutation	M	1.945	getma.org/?cm=var&var=hg19,11,66483446,C,T&fts=all	getma.org/pdb.php?prot=SPTN2_HUMAN&from=1&to=278&var=R55Q	getma.org/?cm=msa&ty=f&p=SPTN2_HUMAN&rb=1&re=278&var=R55Q	GRCh37	-1	SNP	novel	.	0	cGa/cAa	NM_006946.2
OSCJM-PTC-139-T	6722	SRF	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTC-295-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	43143624	43143624	A	G	T321A	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,6,43143624,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SRF_HUMAN&rb=200&re=347&var=T321A	GRCh37	1	SNP	novel	unknown	0	Act/Gct	NM_003131.2
OSCJM-PT14-353-T	6725	SRMS	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					20	62172875	62172875	G	A	R349W	Missense_Mutation	H	4.735	getma.org/?cm=var&var=hg19,20,62172875,G,A&fts=all	getma.org/pdb.php?prot=SRMS_HUMAN&from=230&to=480&var=R349W	getma.org/?cm=msa&ty=f&p=SRMS_HUMAN&rb=230&re=480&var=R349W	GRCh37	-1	SNP	novel	unknown	0.0001	Cgg/Tgg	NM_080823.2
OSCJM-PT01-166-T	6733	SRPK2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	104801043	104801043	C	A	E167*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,7,104801043,C,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Gaa/Taa	NM_182691.2
OSCJM-PT01-166-T	6764	ST5	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	8772184	8772184	G	A	R22W	Missense_Mutation	L	1.525	getma.org/?cm=var&var=hg19,11,8772184,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ST5_HUMAN&rb=1&re=200&var=R22W	GRCh37	-1	SNP	NA	NA	0.00001	Cgg/Tgg	NM_213618.1
OSCJM-PT03-388-T	6772	STAT1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	191840560	191840560	C	T	E705K	Missense_Mutation	L	0.82	getma.org/?cm=var&var=hg19,2,191840560,C,T&fts=all	getma.org/pdb.php?prot=STAT1_HUMAN&from=659&to=714&var=E705K	getma.org/?cm=msa&ty=f&p=STAT1_HUMAN&rb=659&re=714&var=E705K	GRCh37	-1	SNP	NA	NA	0	Gag/Aag	NM_007315.3
OSCJM-PTD-578-T	6781	STC1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	23709899	23709899	T	A	X40_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_003155.2
OSCJM-PT37-513-T	6785	ELOVL4	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	80629231	80629231	T	A	H192L	Missense_Mutation	H	4.39	getma.org/?cm=var&var=hg19,6,80629231,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ELOV4_HUMAN&rb=41&re=278&var=H192L	GRCh37	-1	SNP	novel	.	0	cAt/cTt	NM_022726.3
OSCJM-PT20-600-T	6789	STK4	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT20-506-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	43629914	43629914	A	C	E356A	Missense_Mutation	L	1.2	getma.org/?cm=var&var=hg19,20,43629914,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=STK4_HUMAN&rb=282&re=431&var=E356A	GRCh37	1	SNP	novel	.	0	gAg/gCg	NM_006282.2
OSCJM-PT15-391-T	6793	STK10	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT15-284-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	171614949	171614949	T	C	N33S	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,5,171614949,T,C&fts=all	getma.org/pdb.php?prot=STK10_HUMAN&from=1&to=35&var=N33S	getma.org/?cm=msa&ty=f&p=STK10_HUMAN&rb=1&re=35&var=N33S	GRCh37	-1	SNP	novel	unknown	0.00002	aAc/aGc	NM_005990.3
OSCJM-PTB-347-T	6829	SUPT5H	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTB-173-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	39963519	39963519	A	G	D702G	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,19,39963519,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SPT5H_HUMAN&rb=504&re=703&var=D702G	GRCh37	1	SNP	novel	unknown	0	gAc/gGc	NM_001111020.2,NM_001130824.1
OSCJM-PT32-489-T	6832	SUPV3L1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	70962246	70962246	C	G	L524V	Missense_Mutation	M	2.785	getma.org/?cm=var&var=hg19,10,70962246,C,G&fts=all	getma.org/pdb.php?prot=SUV3_HUMAN&from=476&to=624&var=L524V	getma.org/?cm=msa&ty=f&p=SUV3_HUMAN&rb=476&re=624&var=L524V	GRCh37	1	SNP	NA	NA	0	Ctc/Gtc	NM_003171.3
OSCJM-PTC-139-T	6835	SURF2	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTC-295-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	136227246	136227246	A	G	K208R	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,9,136227246,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SURF2_HUMAN&rb=1&re=253&var=K208R	GRCh37	1	SNP	novel	unknown	0	aAg/aGg	NM_001278928.1,NM_017503.4
OSCJM-PT32-489-T	6850	SYK	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	93650843	93650843	G	A	R590Q	Missense_Mutation	M	3.065	getma.org/?cm=var&var=hg19,9,93650843,G,A&fts=all	getma.org/pdb.php?prot=KSYK_HUMAN&from=371&to=626&var=R590Q	getma.org/?cm=msa&ty=f&p=KSYK_HUMAN&rb=371&re=626&var=R590Q	GRCh37	1	SNP	NA	NA	0.00002	cGg/cAg	NM_001174167.1
OSCJM-PT15-391-T	6872	TAF1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT15-284-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	70683760	70683760	A	G	E1828G	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,X,70683760,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TAF1_HUMAN&rb=1425&re=1872&var=E1828G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_004606.3,NM_138923.2
OSCJM-PTD-578-T	6894	TARBP1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	234596074	234596074	G	T	L490I	Missense_Mutation	M	2.125	getma.org/?cm=var&var=hg19,1,234596074,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TARB1_HUMAN&rb=448&re=647&var=L490I	GRCh37	-1	SNP	NA	NA	0	Cta/Ata	NM_005646.3
OSCJM-PTD-578-T	6907	TBL1X	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	9652149	9652149	C	T	T93M	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,X,9652149,C,T&fts=all	getma.org/pdb.php?prot=TBL1X_HUMAN&from=92&to=137&var=T93M	getma.org/?cm=msa&ty=f&p=TBL1X_HUMAN&rb=92&re=137&var=T93M	GRCh37	1	SNP	NA	NA	0	aCg/aTg	NM_005647.3
OSCJM-PT11-385-T	6926	TBX3	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT11-517-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	115109752	115109752	T	A	K709I	Missense_Mutation	M	2.33	getma.org/?cm=var&var=hg19,12,115109752,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBX3_HUMAN&rb=614&re=743&var=K709I	GRCh37	-1	SNP	novel	.	0	aAa/aTa	NM_016569.3
OSCJM-PT32-489-T	6953	TCP10	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	167790110	167790110	C	T	R167H	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,6,167790110,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=D1MPS5_HUMAN&rb=1&re=243&var=R167H	GRCh37	-1	SNP	NA	NA	0.00002	cGt/cAt	NM_004610.3
OSCJM-PT18-392-T	7023	TFAP4	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	4310468	4310468	C	G	Q218H	Missense_Mutation	N	-0.69	getma.org/?cm=var&var=hg19,16,4310468,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TFAP4_HUMAN&rb=151&re=336&var=Q218H	GRCh37	-1	SNP	rs251732	by2Hit2Allele;byCluster;byHapMap	0.5871	caG/caC	NM_003223.2
OSCJM-PT46-394-T	7025	NR2F1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	92923625	92923625	G	A	V156I	Missense_Mutation	M	2.97	getma.org/?cm=var&var=hg19,5,92923625,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=COT1_HUMAN&rb=154&re=198&var=V156I	GRCh37	1	SNP	novel	unknown	0	Gtt/Att	NM_005654.4
OSCJM-PT12-478-T	7026	NR2F2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	96877830	96877830	C	G	S323*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,15,96877830,C,G&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	tCa/tGa	NM_021005.3
OSCJM-PT01-166-T	7049	TGFBR3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	92161270	92161270	G	A	A799V	Missense_Mutation	M	2.095	getma.org/?cm=var&var=hg19,1,92161270,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TGBR3_HUMAN&rb=731&re=849&var=A799V	GRCh37	-1	SNP	NA	NA	0	gCa/gTa	NM_001195683.1,NM_003243.4
OSCJM-PT46-394-T	7049	TGFBR3	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	92187631	92187631	T	C	D319G	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,1,92187631,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TGBR3_HUMAN&rb=21&re=414&var=D319G	GRCh37	-1	SNP	novel	unknown	0.00001	gAc/gGc	NM_001195683.1,NM_003243.4
OSCJM-PT04-447-T	7050	TGIF1	hgsc.bcm.edu	Illumina	Somatic	T	-	OSCJM-PT04-206-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					18	3452223	3452223	T	-	P83Lfs*51	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	rs11571510	byCluster	0.3236	ccT/cc	NM_170695.3
OSCJM-PT46-394-T	7064	THOP1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	2805061	2805061	G	A	G213S	Missense_Mutation	M	2.785	getma.org/?cm=var&var=hg19,19,2805061,G,A&fts=all	getma.org/pdb.php?prot=THOP1_HUMAN&from=201&to=226&var=G213S	getma.org/?cm=msa&ty=f&p=THOP1_HUMAN&rb=171&re=256&var=G213S	GRCh37	1	SNP	novel	unknown	0.00003	Ggc/Agc	NM_003249.3
OSCJM-PT45-364-T	7077	TIMP2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	76851825	76851825	C	T	R196K	Missense_Mutation	M	2.2	getma.org/?cm=var&var=hg19,17,76851825,C,T&fts=all	getma.org/pdb.php?prot=TIMP2_HUMAN&from=25&to=203&var=R196K	getma.org/?cm=msa&ty=f&p=TIMP2_HUMAN&rb=25&re=203&var=R196K	GRCh37	-1	SNP	novel	unknown	0	aGa/aAa	NM_003255.4
OSCJM-PT37-513-T	7094	TLN1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	35712063	35712063	C	G	R1207P	Missense_Mutation	M	2.125	getma.org/?cm=var&var=hg19,9,35712063,C,G&fts=all	getma.org/pdb.php?prot=TLN1_HUMAN&from=1053&to=1233&var=R1207P	getma.org/?cm=msa&ty=f&p=TLN1_HUMAN&rb=1053&re=1233&var=R1207P	GRCh37	-1	SNP	novel	.	0	cGc/cCc	NM_006289.3
OSCJM-PT46-394-T	7112	TMPO	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	98927207	98927207	G	A	G391D	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,12,98927207,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=LAP2A_HUMAN&rb=191&re=460&var=G391D	GRCh37	1	SNP	novel	unknown	0	gGt/gAt	NM_003276.2
OSCJM-PTB-347-T	7125	TNNC2	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	44452673	44452673	C	A	M136I	Missense_Mutation	N	-0.97	getma.org/?cm=var&var=hg19,20,44452673,C,A&fts=all	getma.org/pdb.php?prot=TNNC2_HUMAN&from=107&to=158&var=M136I	getma.org/?cm=msa&ty=f&p=TNNC2_HUMAN&rb=107&re=158&var=M136I	GRCh37	-1	SNP	NA	NA	0	atG/atT	NM_003279.2
OSCJM-PT05-91-T	7130	TNFAIP6	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PT05-46-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					2	152236046	152236046	A	-	*278fs	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.491	tAa/ta	NM_007115.3
OSCJM-PTD-578-T	7130	TNFAIP6	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					2	152236046	152236046	A	-	*278fs	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.491	tAa/ta	NM_007115.3
OSCJM-PT50-575-T	7142	TNP2	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	11362783	11362783	G	T	L113M	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,16,11362783,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=STP2_HUMAN&rb=1&re=138&var=L113M	GRCh37	-1	SNP	novel	unknown	0	Ctg/Atg	NM_005425.4
OSCJM-PT15-391-T	7143	TNR	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	175375649	175375649	C	T	V68M	Missense_Mutation	M	2.215	getma.org/?cm=var&var=hg19,1,175375649,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TENR_HUMAN&rb=1&re=200&var=V68M	GRCh37	-1	SNP	novel	unknown	0.00001	Gtg/Atg	NM_003285.2
OSCJM-PT48-530-T	7145	TNS1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	218696258	218696258	G	A	P973L	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,2,218696258,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TENS1_HUMAN&rb=907&re=1106&var=P973L	GRCh37	-1	SNP	novel	unknown	0.0002	cCg/cTg	NM_022648.4
OSCJM-PT42-193-T	7157	TP53	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7577538	7577538	C	T	R248Q	Missense_Mutation	M	2.97	getma.org/?cm=var&var=hg19,17,7577538,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R248Q	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R248Q	GRCh37	-1	SNP	NA	NA	0.00005	cGg/cAg	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT04-447-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT04-206-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7577538	7577538	C	T	R248Q	Missense_Mutation	M	2.97	getma.org/?cm=var&var=hg19,17,7577538,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R248Q	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R248Q	GRCh37	-1	SNP	NA	NA	0.00005	cGg/cAg	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT47-449-T	7157	TP53	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT47-225-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7577538	7577538	C	T	R248Q	Missense_Mutation	M	2.97	getma.org/?cm=var&var=hg19,17,7577538,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R248Q	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R248Q	GRCh37	-1	SNP	NA	NA	0.00005	cGg/cAg	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT01-166-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					17	7577120	7577120	C	T	R273H	Missense_Mutation	M	2.455	getma.org/?cm=var&var=hg19,17,7577120,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R273H	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R273H	GRCh37	-1	SNP	NA	NA	0.00003	cGt/cAt	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT07-43-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7578190	7578190	T	C	Y220C	Missense_Mutation	M	3.02	getma.org/?cm=var&var=hg19,17,7578190,T,C&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=Y220C	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=Y220C	GRCh37	-1	SNP	NA	NA	0.00002	tAt/tGt	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT40-169-T	7157	TP53	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7578190	7578190	T	C	Y220C	Missense_Mutation	M	3.02	getma.org/?cm=var&var=hg19,17,7578190,T,C&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=Y220C	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=Y220C	GRCh37	-1	SNP	NA	NA	0.00002	tAt/tGt	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT50-575-T	7157	TP53	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT50-81-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7578190	7578190	T	C	Y220C	Missense_Mutation	M	3.02	getma.org/?cm=var&var=hg19,17,7578190,T,C&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=Y220C	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=Y220C	GRCh37	-1	SNP	NA	NA	0.00002	tAt/tGt	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT38-234-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT38-446-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7574034	7574034	C	T	X332_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT11-385-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7577094	7577094	G	A	R282W	Missense_Mutation	M	3.075	getma.org/?cm=var&var=hg19,17,7577094,G,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R282W	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R282W	GRCh37	-1	SNP	NA	NA	0.00001	Cgg/Tgg	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT05-91-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7578212	7578212	G	A	R213*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,7578212,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cga/Tga	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PTC-139-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7578406	7578406	C	T	R175H	Missense_Mutation	M	3.345	getma.org/?cm=var&var=hg19,17,7578406,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175H	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175H	GRCh37	-1	SNP	NA	NA	0.00001	cGc/cAc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT10-325-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7578406	7578406	C	T	R175H	Missense_Mutation	M	3.345	getma.org/?cm=var&var=hg19,17,7578406,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R175H	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R175H	GRCh37	-1	SNP	NA	NA	0.00001	cGc/cAc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PTD-578-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7577114	7577114	C	A	C275F	Missense_Mutation	M	3.34	getma.org/?cm=var&var=hg19,17,7577114,C,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=C275F	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=C275F	GRCh37	-1	SNP	NA	NA	0	tGt/tTt	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PTA-367-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					17	7577082	7577082	C	T	E286K	Missense_Mutation	M	3.27	getma.org/?cm=var&var=hg19,17,7577082,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=E286K	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=E286K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PTB-347-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PTB-173-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7578369	7578369	A	C	X187_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT20-600-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					17	7578176	7578176	C	A	X224_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT19-481-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT19-3-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	Sanger	Valid	.	.					17	7578555	7578555	C	T	X126_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT37-513-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7577046	7577046	C	A	E298*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,7577046,C,A&fts=all	NA	NA	GRCh37	-1	SNP	COSM1646820	Cosmic	0	Gag/Tag	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PTB-347-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7578413	7578413	C	A	V173L	Missense_Mutation	M	3.31	getma.org/?cm=var&var=hg19,17,7578413,C,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=V173L	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=V173L	GRCh37	-1	SNP	COSM99641	Cosmic	0	Gtg/Ttg	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT14-353-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7577099	7577099	C	A	R280I	Missense_Mutation	M	3.33	getma.org/?cm=var&var=hg19,17,7577099,C,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R280I	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R280I	GRCh37	-1	SNP	rs121912660	NA	0	aGa/aTa	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT22-229-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7578550	7578550	G	A	S127F	Missense_Mutation	M	3.17	getma.org/?cm=var&var=hg19,17,7578550,G,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=S127F	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=S127F	GRCh37	-1	SNP	novel	null	0	tCc/tTc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT42-193-T	7157	TP53	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7577548	7577548	C	T	G245S	Missense_Mutation	M	2.705	getma.org/?cm=var&var=hg19,17,7577548,C,T&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=G245S	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=G245S	GRCh37	-1	SNP	NA	NA	0	Ggc/Agc	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT07-43-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7579358	7579358	C	A	R110L	Missense_Mutation	L	1.655	getma.org/?cm=var&var=hg19,17,7579358,C,A&fts=all	getma.org/pdb.php?prot=P53_HUMAN&from=95&to=289&var=R110L	getma.org/?cm=msa&ty=f&p=P53_HUMAN&rb=95&re=289&var=R110L	GRCh37	-1	SNP	rs11540654	NA	0.00001	cGt/cTt	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT35-37-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT35-339-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	7576928	7576928	T	C	X307_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	NA	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT43-201-T	7157	TP53	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7578552	7578552	G	C	Y126*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,7578552,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	taC/taG	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT21-238-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT21-231-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7576870	7576870	C	A	E326*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,7576870,C,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Gaa/Taa	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PTA-367-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	7576853	7576853	C	T	Q331Q	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	caG/caA	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT32-489-T	7157	TP53	hgsc.bcm.edu	SOLID	Somatic	GACG	-	OSCJM-PT32-30-N	GACG	GACG	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					17	7579356	7579359	GACG	-	R110Wfs*12	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	rs11540654	NA	0	CGTCtg/tg	NM_001126112.2,NM_001276761.1,NM_001276760.1,NM_000546.5,NM_0011
OSCJM-PT43-201-T	7159	TP53BP2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	223988512	223988512	C	T	G409D	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,1,223988512,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ASPP2_HUMAN&rb=401&re=600&var=G403D	GRCh37	-1	SNP	novel	unknown	0	gGc/gAc	NM_001031685.2
OSCJM-PTB-347-T	7174	TPP2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	103296910	103296910	G	A	G727R	Missense_Mutation	M	2.365	getma.org/?cm=var&var=hg19,13,103296910,G,A&fts=all	getma.org/pdb.php?prot=TPP2_HUMAN&from=710&to=772&var=G727R	getma.org/?cm=msa&ty=f&p=TPP2_HUMAN&rb=710&re=772&var=G727R	GRCh37	1	SNP	NA	NA	0.00001	Gga/Aga	NM_003291.2
OSCJM-PT01-166-T	7177	TPSAB1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT01-583-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	1291178	1291178	T	C	V29A	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,16,1291178,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TRYB1_HUMAN&rb=1&re=30&var=V29A	GRCh37	1	SNP	NA	NA	0.2695	gTg/gCg	NM_003294.3
OSCJM-PT38-234-T	7179	TPTE	hgsc.bcm.edu	SOLID	Somatic	CTT	-	OSCJM-PT38-446-N	CTT	CTT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					21	10942925	10942927	CTT	-	R222del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	.	0.3321	agAAGg/agg	NM_199261.2
OSCJM-PT49-537-T	7179	TPTE	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					21	10971305	10971305	C	T	G18S	Missense_Mutation	N	-0.69	getma.org/?cm=var&var=hg19,21,10971305,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TPTE_HUMAN&rb=1&re=127&var=G18S	GRCh37	-1	SNP	novel	unknown	0.00002	Ggc/Agc	NM_199261.2
OSCJM-PT11-385-T	7204	TRIO	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	14378176	14378176	G	A	M1129I	Missense_Mutation	N	0.665	getma.org/?cm=var&var=hg19,5,14378176,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TRIO_HUMAN&rb=1012&re=1137&var=M1129I	GRCh37	1	SNP	NA	NA	0	atG/atA	NM_007118.2
OSCJM-PT45-364-T	7253	TSHR	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	81610234	81610234	C	T	P611L	Missense_Mutation	M	3.25	getma.org/?cm=var&var=hg19,14,81610234,C,T&fts=all	getma.org/pdb.php?prot=TSHR_HUMAN&from=431&to=678&var=P611L	getma.org/?cm=msa&ty=f&p=TSHR_HUMAN&rb=431&re=678&var=P611L	GRCh37	1	SNP	NA	NA	0.00001	cCg/cTg	NA
OSCJM-PT05-91-T	7257	TSNAX	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	231696970	231696970	C	T	T155M	Missense_Mutation	N	0.255	getma.org/?cm=var&var=hg19,1,231696970,C,T&fts=all	getma.org/pdb.php?prot=TSNAX_HUMAN&from=50&to=265&var=T155M	getma.org/?cm=msa&ty=f&p=TSNAX_HUMAN&rb=50&re=265&var=T155M	GRCh37	1	SNP	novel	unknown	0.00002	aCg/aTg	NM_005999.2
OSCJM-PT01-166-T	7270	TTF1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	135277682	135277682	G	A	A176V	Missense_Mutation	L	1.24	getma.org/?cm=var&var=hg19,9,135277682,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TTF1_HUMAN&rb=1&re=489&var=A176V	GRCh37	-1	SNP	NA	NA	0	gCa/gTa	NM_001205296.1,NM_007344.3
OSCJM-PT42-193-T	7270	TTF1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT42-279-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	135267477	135267477	G	C	S658*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,9,135267477,G,C&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	tCa/tGa	NM_001205296.1,NM_007344.3
OSCJM-PTA-367-T	7273	TTN	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	179647599	179647599	G	A	R1012*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,179647599,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cga/Tga	NA
OSCJM-PT32-489-T	7273	TTN	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	179457367	179457367	C	A	D18148Y	Missense_Mutation	M	2.845	getma.org/?cm=var&var=hg19,2,179457367,C,A&fts=all	getma.org/pdb.php?prot=TITIN_HUMAN&from=18143&to=18228&var=D18148Y	getma.org/?cm=msa&ty=f&p=TITIN_HUMAN&rb=18143&re=18228&var=D18148Y	GRCh37	-1	SNP	NA	NA	0	Gat/Tat	NA
OSCJM-PT12-478-T	7273	TTN	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT12-103-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	179514582	179514582	A	G	V11779A	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,2,179514582,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TITIN_HUMAN&rb=11726&re=11925&var=V11779A	GRCh37	-1	SNP	novel	unknown	0.00001	gTt/gCt	NA
OSCJM-PT20-600-T	7273	TTN	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	179432219	179432219	C	G	E24573Q	Missense_Mutation	L	1.64	getma.org/?cm=var&var=hg19,2,179432219,C,G&fts=all	getma.org/pdb.php?prot=TITIN_HUMAN&from=24552&to=24642&var=E24573Q	getma.org/?cm=msa&ty=f&p=TITIN_HUMAN&rb=24552&re=24642&var=E24573Q	GRCh37	-1	SNP	novel	.	0	Gag/Cag	NA
OSCJM-PT36-331-T	7273	TTN	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT36-126-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	179451343	179451343	T	C	T19788A	Missense_Mutation	N	0.39	getma.org/?cm=var&var=hg19,2,179451343,T,C&fts=all	getma.org/pdb.php?prot=TITIN_HUMAN&from=19727&to=19812&var=T19788A	getma.org/?cm=msa&ty=f&p=TITIN_HUMAN&rb=19727&re=19812&var=T19788A	GRCh37	-1	SNP	novel	.	0	Act/Gct	NA
OSCJM-PT37-513-T	7273	TTN	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	179428936	179428936	A	G	V25667A	Missense_Mutation	L	0.81	getma.org/?cm=var&var=hg19,2,179428936,A,G&fts=all	getma.org/pdb.php?prot=TITIN_HUMAN&from=25637&to=25725&var=V25667A	getma.org/?cm=msa&ty=f&p=TITIN_HUMAN&rb=25637&re=25725&var=V25667A	GRCh37	-1	SNP	novel	.	0	gTt/gCt	NA
OSCJM-PT43-201-T	7273	TTN	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	179495872	179495872	C	A	A12994S	Missense_Mutation	N	-0.03	getma.org/?cm=var&var=hg19,2,179495872,C,A&fts=all	getma.org/pdb.php?prot=TITIN_HUMAN&from=12945&to=13027&var=A12994S	getma.org/?cm=msa&ty=f&p=TITIN_HUMAN&rb=12945&re=13027&var=A12994S	GRCh37	-1	SNP	novel	unknown	0	Gca/Tca	NA
OSCJM-PT41-180-T	7278	TUBA3C	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT41-594-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					13	19751279	19751279	A	T	Y282N	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Tac/Aac	NM_006001.2
OSCJM-PT36-331-T	7284	TUFM	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	28856072	28856072	A	G	Y211H	Missense_Mutation	M	3.365	getma.org/?cm=var&var=hg19,16,28856072,A,G&fts=all	getma.org/pdb.php?prot=EFTU_HUMAN&from=55&to=249&var=Y208H	getma.org/?cm=msa&ty=f&p=EFTU_HUMAN&rb=55&re=249&var=Y208H	GRCh37	-1	SNP	novel	.	0.00001	Tat/Cat	NM_003321.4
OSCJM-PT15-391-T	7301	TYRO3	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT15-284-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	41865667	41865667	T	G	X715_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	NA	NM_006293.3
OSCJM-PT46-394-T	7328	UBE2H	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	129479124	129479124	T	C	N117S	Missense_Mutation	H	4.14	getma.org/?cm=var&var=hg19,7,129479124,T,C&fts=all	getma.org/pdb.php?prot=UBE2H_HUMAN&from=9&to=145&var=N117S	getma.org/?cm=msa&ty=f&p=UBE2H_HUMAN&rb=9&re=145&var=N117S	GRCh37	-1	SNP	novel	unknown	0	aAc/aGc	NM_003344.3,NM_001202498.1
OSCJM-PT03-388-T	7337	UBE3A	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	25615900	25615900	A	C	F477C	Missense_Mutation	M	2.285	getma.org/?cm=var&var=hg19,15,25615900,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBE3A_HUMAN&rb=11&re=495&var=F477C	GRCh37	-1	SNP	NA	NA	0	tTt/tGt	NA
OSCJM-PT18-392-T	7351	UCP2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	73688981	73688981	C	T	R96H	Missense_Mutation	H	3.975	getma.org/?cm=var&var=hg19,11,73688981,C,T&fts=all	getma.org/pdb.php?prot=UCP2_HUMAN&from=9&to=111&var=R96H	getma.org/?cm=msa&ty=f&p=UCP2_HUMAN&rb=9&re=111&var=R96H	GRCh37	-1	SNP	NA	NA	0.00001	cGc/cAc	NM_003355.2
OSCJM-PT37-513-T	7371	UCK2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	165872442	165872442	G	A	G175S	Missense_Mutation	H	4.135	getma.org/?cm=var&var=hg19,1,165872442,G,A&fts=all	getma.org/pdb.php?prot=UCK2_HUMAN&from=22&to=217&var=G175S	getma.org/?cm=msa&ty=f&p=UCK2_HUMAN&rb=22&re=217&var=G175S	GRCh37	1	SNP	novel	.	0	Ggc/Agc	NM_012474.4
OSCJM-PT10-325-T	7391	USF1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	161012371	161012371	C	T	V50I	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,1,161012371,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=USF1_HUMAN&rb=1&re=199&var=V50I	GRCh37	-1	SNP	NA	NA	0	Gtc/Atc	NM_001276373.1
OSCJM-PT18-392-T	7399	USH2A	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	215844352	215844352	C	T	D4699N	Missense_Mutation	M	2.845	getma.org/?cm=var&var=hg19,1,215844352,C,T&fts=all	getma.org/pdb.php?prot=USH2A_HUMAN&from=4650&to=4724&var=D4699N	getma.org/?cm=msa&ty=f&p=USH2A_HUMAN&rb=4650&re=4724&var=D4699N	GRCh37	-1	SNP	novel	.	0	Gat/Aat	NM_206933.2
OSCJM-PT22-229-T	7399	USH2A	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT22-321-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	216019252	216019252	T	C	N2990S	Missense_Mutation	L	1.845	getma.org/?cm=var&var=hg19,1,216019252,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=USH2A_HUMAN&rb=2927&re=3006&var=N2990S	GRCh37	-1	SNP	novel	.	0	aAc/aGc	NM_206933.2
OSCJM-PT48-530-T	7399	USH2A	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	215933067	215933067	G	T	N3722K	Missense_Mutation	N	-0.11	getma.org/?cm=var&var=hg19,1,215933067,G,T&fts=all	getma.org/pdb.php?prot=USH2A_HUMAN&from=3677&to=3767&var=N3722K	getma.org/?cm=msa&ty=f&p=USH2A_HUMAN&rb=3677&re=3767&var=N3722K	GRCh37	-1	SNP	novel	unknown	0	aaC/aaA	NM_206933.2
OSCJM-PT30-592-T	7402	UTRN	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT30-587-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	144820471	144820471	G	A	E1558K	Missense_Mutation	M	2.005	getma.org/?cm=var&var=hg19,6,144820471,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=UTRO_HUMAN&rb=1544&re=1649&var=E1558K	GRCh37	1	SNP	novel	.	0	Gaa/Aaa	NM_007124.2
OSCJM-PTD-578-T	7407	VARS	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	31752260	31752260	G	A	T496I	Missense_Mutation	M	2.055	getma.org/?cm=var&var=hg19,6,31752260,G,A&fts=all	getma.org/pdb.php?prot=SYVC_HUMAN&from=308&to=939&var=T496I	getma.org/?cm=msa&ty=f&p=SYVC_HUMAN&rb=308&re=939&var=T496I	GRCh37	-1	SNP	NA	NA	0	aCa/aTa	NM_006295.2
OSCJM-PT37-513-T	7410	VAV2	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	136643994	136643994	T	C	M594V	Missense_Mutation	N	-0.55	getma.org/?cm=var&var=hg19,9,136643994,T,C&fts=all	getma.org/pdb.php?prot=VAV2_HUMAN&from=590&to=650&var=M594V	getma.org/?cm=msa&ty=f&p=VAV2_HUMAN&rb=590&re=650&var=M594V	GRCh37	-1	SNP	rs602990	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.498	Atg/Gtg	NM_001134398.1
OSCJM-PT03-388-T	7415	VCP	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	35061663	35061663	T	C	I369V	Missense_Mutation	N	0.74	getma.org/?cm=var&var=hg19,9,35061663,T,C&fts=all	getma.org/pdb.php?prot=TERA_HUMAN&from=241&to=371&var=I369V	getma.org/?cm=msa&ty=f&p=TERA_HUMAN&rb=241&re=371&var=I369V	GRCh37	-1	SNP	NA	NA	0	Att/Gtt	NM_007126.3
OSCJM-PTC-139-T	7419	VDAC3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	42262937	42262937	C	T	A270V	Missense_Mutation	M	2.78	getma.org/?cm=var&var=hg19,8,42262937,C,T&fts=all	getma.org/pdb.php?prot=VDAC3_HUMAN&from=3&to=276&var=A270V	getma.org/?cm=msa&ty=f&p=VDAC3_HUMAN&rb=3&re=276&var=A270V	GRCh37	1	SNP	NA	NA	0.00001	gCa/gTa	NA
OSCJM-PT01-166-T	7442	TRPV1	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PT01-583-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					17	3477169	3477170	-	G	C621Lfs*6	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	rs56355372	unknown	0	-/C	NM_080706.3
OSCJM-PT10-325-T	7442	TRPV1	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PT10-70-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					17	3477169	3477170	-	G	C621Lfs*6	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	rs56355372	unknown	0	-/C	NM_080706.3
OSCJM-PT48-530-T	7455	ZAN	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	100356180	100356180	G	A	G1160R	Missense_Mutation	H	4.29	getma.org/?cm=var&var=hg19,7,100356180,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZAN_HUMAN&rb=1156&re=1308&var=G1160R	GRCh37	1	SNP	novel	unknown	0	Gga/Aga	NM_173059.1
OSCJM-PT50-575-T	7461	CLIP2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	73770795	73770795	C	T	R287C	Missense_Mutation	M	2.08	getma.org/?cm=var&var=hg19,7,73770795,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CLIP2_HUMAN&rb=287&re=486&var=R287C	GRCh37	1	SNP	novel	unknown	0.00001	Cgt/Tgt	NM_003388.4
OSCJM-PTD-578-T	7474	WNT5A	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	55508441	55508441	T	C	E203G	Missense_Mutation	L	1.15	getma.org/?cm=var&var=hg19,3,55508441,T,C&fts=all	getma.org/pdb.php?prot=WNT5A_HUMAN&from=68&to=380&var=E203G	getma.org/?cm=msa&ty=f&p=WNT5A_HUMAN&rb=68&re=380&var=E203G	GRCh37	-1	SNP	novel	unknown	0	gAg/gGg	NM_003392.4
OSCJM-PT42-193-T	7479	WNT8B	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT42-279-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	102239727	102239727	G	A	E67K	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,10,102239727,G,A&fts=all	getma.org/pdb.php?prot=WNT8B_HUMAN&from=21&to=334&var=E67K	getma.org/?cm=msa&ty=f&p=WNT8B_HUMAN&rb=21&re=334&var=E67K	GRCh37	1	SNP	novel	unknown	0	Gag/Aag	NM_003393.3
OSCJM-PT03-388-T	7490	WT1	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	32438048	32438048	T	G	E330A	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,11,32438048,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=WT1_HUMAN&rb=1&re=321&var=E262A	GRCh37	-1	SNP	NA	NA	0	gAa/gCa	NM_024426.4,NM_024424.3
OSCJM-PT07-43-T	7538	ZFP36	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	39898771	39898771	G	A	R138H	Missense_Mutation	M	2.86	getma.org/?cm=var&var=hg19,19,39898771,G,A&fts=all	getma.org/pdb.php?prot=TTP_HUMAN&from=131&to=141&var=R138H	getma.org/?cm=msa&ty=f&p=TTP_HUMAN&rb=101&re=171&var=R138H	GRCh37	1	SNP	NA	NA	0	cGc/cAc	NM_003407.3
OSCJM-PT42-193-T	7541	ZBTB14	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT42-279-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	5291449	5291449	G	C	T253R	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,18,5291449,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZF161_HUMAN&rb=243&re=290&var=T253R	GRCh37	-1	SNP	novel	unknown	0	aCa/aGa	NM_001143823.2,NM_001243704.1
OSCJM-PT14-353-T	7549	ZNF2	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT14-504-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	95846973	95846973	A	G	M134V	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,2,95846973,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZNF2_HUMAN&rb=55&re=186&var=M134V	GRCh37	1	SNP	novel	unknown	0	Atg/Gtg	NM_021088.2
OSCJM-PTA-367-T	7562	ZNF708	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	21493405	21493405	C	A	A10S	Missense_Mutation	M	2.66	getma.org/?cm=var&var=hg19,19,21493405,C,A&fts=all	getma.org/pdb.php?prot=ZN708_HUMAN&from=4&to=44&var=A10S	getma.org/?cm=msa&ty=f&p=ZN708_HUMAN&rb=4&re=44&var=A10S	GRCh37	-1	SNP	NA	NA	0	Gcc/Tcc	NM_021269.2
OSCJM-PT07-43-T	7574	ZNF26	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	133587322	133587322	A	G	Y286C	Missense_Mutation	M	2.145	getma.org/?cm=var&var=hg19,12,133587322,A,G&fts=all	getma.org/pdb.php?prot=ZNF26_HUMAN&from=272&to=296&var=Y286C	getma.org/?cm=msa&ty=f&p=ZNF26_HUMAN&rb=252&re=316&var=Y286C	GRCh37	1	SNP	novel	unknown	0	tAt/tGt	NM_019591.3
OSCJM-PT20-600-T	7620	ZNF69	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	12014455	12014455	C	A	S44Y	Missense_Mutation	M	3.175	getma.org/?cm=var&var=hg19,19,12014455,C,A&fts=all	getma.org/pdb.php?prot=C9JR48_HUMAN&from=20&to=50&var=S30Y	getma.org/?cm=msa&ty=f&p=C9JR48_HUMAN&rb=20&re=50&var=S30Y	GRCh37	1	SNP	novel	.	0	tCc/tAc	NA
OSCJM-PT20-600-T	7638	ZNF221	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	44470189	44470189	T	A	F179I	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,19,44470189,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZN221_HUMAN&rb=71&re=183&var=F179I	GRCh37	1	SNP	rs454301	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.9826	Ttc/Atc	NA
OSCJM-PT03-388-T	7639	ZNF85	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	21132162	21132162	C	G	T281S	Missense_Mutation	L	0.96	getma.org/?cm=var&var=hg19,19,21132162,C,G&fts=all	getma.org/pdb.php?prot=ZNF85_HUMAN&from=272&to=297&var=T281S	getma.org/?cm=msa&ty=f&p=ZNF85_HUMAN&rb=252&re=317&var=T281S	GRCh37	1	SNP	novel	unknown	0	aCt/aGt	NM_003429.4,NM_001256173.1
OSCJM-PT45-364-T	7644	ZNF91	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	23542683	23542683	C	T	R1033Q	Missense_Mutation	N	0.04	getma.org/?cm=var&var=hg19,19,23542683,C,T&fts=all	getma.org/pdb.php?prot=ZNF91_HUMAN&from=1008&to=1033&var=R1033Q	getma.org/?cm=msa&ty=f&p=ZNF91_HUMAN&rb=988&re=1053&var=R1033Q	GRCh37	-1	SNP	rs1821846	byHapMap	0	cGa/cAa	NM_003430.2
OSCJM-PT11-385-T	7652	ZNF99	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT11-517-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	22942355	22942355	C	T	S119N	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,19,22942355,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZNF99_HUMAN&rb=66&re=179&var=S140N	GRCh37	-1	SNP	NA	NA	0	aGt/aAt	NM_001080409.2
OSCJM-PT40-169-T	7652	ZNF99	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	22940586	22940586	C	G	E709Q	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,19,22940586,C,G&fts=all	getma.org/pdb.php?prot=ZNF99_HUMAN&from=600&to=625&var=E618Q	getma.org/?cm=msa&ty=f&p=ZNF99_HUMAN&rb=580&re=645&var=E618Q	GRCh37	-1	SNP	NA	NA	0	Gaa/Caa	NM_001080409.2
OSCJM-PTD-578-T	7673	ZNF222	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	44536636	44536636	C	A	S270*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,19,44536636,C,A&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	tCa/tAa	NM_013360.2
OSCJM-PT15-391-T	7673	ZNF222	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					19	44536918	44536918	C	T	T364M	Missense_Mutation	M	3.05	getma.org/?cm=var&var=hg19,19,44536918,C,T&fts=all	getma.org/pdb.php?prot=ZN222_HUMAN&from=355&to=380&var=T364M	getma.org/?cm=msa&ty=f&p=ZN222_HUMAN&rb=335&re=400&var=T364M	GRCh37	1	SNP	novel	unknown	0.00008	aCg/aTg	NM_013360.2
OSCJM-PT37-513-T	7681	MKRN3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	23812160	23812160	C	T	P411S	Missense_Mutation	M	2.395	getma.org/?cm=var&var=hg19,15,23812160,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MKRN3_HUMAN&rb=368&re=507&var=P411S	GRCh37	1	SNP	novel	.	0.00001	Cca/Tca	NM_005664.3
OSCJM-PT03-388-T	7691	ZNF132	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	58945445	58945445	C	T	E456K	Missense_Mutation	L	1.66	getma.org/?cm=var&var=hg19,19,58945445,C,T&fts=all	getma.org/pdb.php?prot=ZN132_HUMAN&from=445&to=470&var=E456K	getma.org/?cm=msa&ty=f&p=ZN132_HUMAN&rb=425&re=490&var=E456K	GRCh37	-1	SNP	NA	NA	0	Gaa/Aaa	NM_003433.3
OSCJM-PT32-489-T	7693	ZNF134	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	58132578	58132578	G	T	R364M	Missense_Mutation	M	2.61	getma.org/?cm=var&var=hg19,19,58132578,G,T&fts=all	getma.org/pdb.php?prot=ZN134_HUMAN&from=358&to=383&var=R364M	getma.org/?cm=msa&ty=f&p=ZN134_HUMAN&rb=338&re=403&var=R364M	GRCh37	1	SNP	novel	.	0	aGg/aTg	NM_003435.3
OSCJM-PT45-364-T	7728	ZNF175	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	52090131	52090131	C	T	R183C	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,19,52090131,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZN175_HUMAN&rb=68&re=267&var=R183C	GRCh37	1	SNP	novel	unknown	0.00004	Cgc/Tgc	NM_007147.2
OSCJM-PT19-481-T	7733	ZNF180	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT19-3-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	44981883	44981883	C	G	C272S	Missense_Mutation	N	-0.345	getma.org/?cm=var&var=hg19,19,44981883,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZN180_HUMAN&rb=113&re=277&var=C272S	GRCh37	-1	SNP	rs1897820	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.42	tGc/tCc	NM_013256.4
OSCJM-PT15-391-T	7757	ZNF208	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT15-284-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	22157414	22157414	T	C	Q141R	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	cAg/cGg	NM_007153.3
OSCJM-PT14-353-T	7776	ZNF236	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT14-504-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	74635029	74635029	A	G	H1185R	Missense_Mutation	M	3.045	getma.org/?cm=var&var=hg19,18,74635029,A,G&fts=all	getma.org/pdb.php?prot=ZN236_HUMAN&from=1181&to=1206&var=H1185R	getma.org/?cm=msa&ty=f&p=ZN236_HUMAN&rb=1161&re=1226&var=H1185R	GRCh37	1	SNP	novel	unknown	0	cAt/cGt	NM_007345.3
OSCJM-PT22-229-T	7799	PRDM2	hgsc.bcm.edu	SOLID	Somatic	-	CTC	OSCJM-PT22-321-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					1	14106394	14106395	-	CTC	P703dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0.4733	act/aCTCct	NM_012231.4
OSCJM-PT36-331-T	7804	LRP8	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	53792651	53792651	A	C	D46E	Missense_Mutation	N	-0.15	getma.org/?cm=var&var=hg19,1,53792651,A,C&fts=all	getma.org/pdb.php?prot=LRP8_HUMAN&from=45&to=81&var=D46E	getma.org/?cm=msa&ty=f&p=LRP8_HUMAN&rb=45&re=81&var=D46E	GRCh37	-1	SNP	rs3820198	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.4112	gaT/gaG	NM_004631.4
OSCJM-PT37-513-T	7804	LRP8	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	53792651	53792651	A	C	D46E	Missense_Mutation	N	-0.15	getma.org/?cm=var&var=hg19,1,53792651,A,C&fts=all	getma.org/pdb.php?prot=LRP8_HUMAN&from=45&to=81&var=D46E	getma.org/?cm=msa&ty=f&p=LRP8_HUMAN&rb=45&re=81&var=D46E	GRCh37	-1	SNP	rs3820198	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.4112	gaT/gaG	NM_004631.4
OSCJM-PT32-489-T	7805	LAPTM5	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	31210496	31210496	C	A	M187I	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,1,31210496,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=LAPM5_HUMAN&rb=28&re=261&var=M187I	GRCh37	-1	SNP	novel	unknown	0	atG/atT	NM_006762.2
OSCJM-PT46-394-T	7837	PXDN	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	1665933	1665933	G	A	P531S	Missense_Mutation	M	2.325	getma.org/?cm=var&var=hg19,2,1665933,G,A&fts=all	getma.org/pdb.php?prot=PXDN_HUMAN&from=525&to=611&var=P531S	getma.org/?cm=msa&ty=f&p=PXDN_HUMAN&rb=525&re=611&var=P531S	GRCh37	-1	SNP	novel	unknown	0	Ccc/Tcc	NM_012293.1
OSCJM-PT45-364-T	7844	RNF103	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	86839395	86839395	G	C	V123V	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	gtC/gtG	NM_005667.3,NM_001198951.1
OSCJM-PT15-391-T	7867	MAPKAPK3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	50684588	50684588	C	T	T317M	Missense_Mutation	M	2.645	getma.org/?cm=var&var=hg19,3,50684588,C,T&fts=all	getma.org/pdb.php?prot=MAPK3_HUMAN&from=305&to=382&var=T317M	getma.org/?cm=msa&ty=f&p=MAPK3_HUMAN&rb=305&re=382&var=T317M	GRCh37	1	SNP	novel	unknown	0.00003	aCg/aTg	NM_001243925.1,NM_004635.4
OSCJM-PT01-166-T	7916	PRRC2A	hgsc.bcm.edu	Illumina	Somatic	CCTGCTGCCCCA	-	OSCJM-PT01-583-N	CCTGCTGCCCCA	CCTGCTGCCCCA	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	31595773	31595784	CCTGCTGCCCCA	-	P512_P515del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.1453	CCTGCTGCCCCA/-	NM_080686.2
OSCJM-PTB-347-T	7916	PRRC2A	hgsc.bcm.edu	Illumina	Somatic	CCTGCTGCCCCA	-	OSCJM-PTB-173-N	CCTGCTGCCCCA	CCTGCTGCCCCA	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	31595773	31595784	CCTGCTGCCCCA	-	P512_P515del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.1453	CCTGCTGCCCCA/-	NM_080686.2
OSCJM-PT49-537-T	7936	NELFE	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	31922650	31922650	G	A	R142*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,31922650,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0.00002	Cga/Tga	NM_002904.5
OSCJM-PT35-37-T	8027	STAM	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT35-339-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	17737164	17737164	A	G	I218V	Missense_Mutation	N	0.795	getma.org/?cm=var&var=hg19,10,17737164,A,G&fts=all	getma.org/pdb.php?prot=STAM1_HUMAN&from=216&to=261&var=I218V	getma.org/?cm=msa&ty=f&p=STAM1_HUMAN&rb=216&re=261&var=I218V	GRCh37	1	SNP	novel	.	0.00001	Ata/Gta	NM_003473.3
OSCJM-PTA-367-T	8029	CUBN	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	16962010	16962010	C	T	R2258H	Missense_Mutation	L	1.345	getma.org/?cm=var&var=hg19,10,16962010,C,T&fts=all	getma.org/pdb.php?prot=CUBN_HUMAN&from=2217&to=2331&var=R2258H	getma.org/?cm=msa&ty=f&p=CUBN_HUMAN&rb=2217&re=2331&var=R2258H	GRCh37	-1	SNP	NA	NA	0.00003	cGc/cAc	NM_001081.3
OSCJM-PTC-139-T	8031	NCOA4	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTC-295-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	51584920	51584920	G	A	W356*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,10,51584920,G,A&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	tGg/tAg	NM_001145260.1
OSCJM-PT22-229-T	8085	KMT2D	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	49443530	49443530	C	A	G1281*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,12,49443530,C,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Gga/Tga	NM_003482.3
OSCJM-PT40-169-T	8085	KMT2D	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	49446699	49446699	T	C	R371G	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,12,49446699,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLL2_HUMAN&rb=324&re=523&var=R371G	GRCh37	-1	SNP	NA	NA	0	Aga/Gga	NM_003482.3
OSCJM-PT03-388-T	8085	KMT2D	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					12	49434159	49434159	G	-	P2465Hfs*20	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	cCa/ca	NM_003482.3
OSCJM-PT49-537-T	8085	KMT2D	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	49432738	49432738	G	A	R2801*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,12,49432738,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Cga/Tga	NM_003482.3
OSCJM-PT49-537-T	8092	ALX1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	85680662	85680662	G	T	R188I	Missense_Mutation	H	3.76	getma.org/?cm=var&var=hg19,12,85680662,G,T&fts=all	getma.org/pdb.php?prot=ALX1_HUMAN&from=133&to=189&var=R188I	getma.org/?cm=msa&ty=f&p=ALX1_HUMAN&rb=133&re=189&var=R188I	GRCh37	1	SNP	novel	unknown	0	aGa/aTa	NM_006982.2
OSCJM-PTC-139-T	8111	GPR68	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	91700766	91700766	C	T	R210H	Missense_Mutation	M	2.28	getma.org/?cm=var&var=hg19,14,91700766,C,T&fts=all	getma.org/pdb.php?prot=OGR1_HUMAN&from=38&to=286&var=R210H	getma.org/?cm=msa&ty=f&p=OGR1_HUMAN&rb=38&re=286&var=R210H	GRCh37	-1	SNP	novel	unknown	0	cGc/cAc	NA
OSCJM-PT01-166-T	8120	AP3B2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	83331629	83331629	G	A	R865W	Missense_Mutation	M	2.39	getma.org/?cm=var&var=hg19,15,83331629,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=AP3B2_HUMAN&rb=791&re=990&var=R865W	GRCh37	-1	SNP	NA	NA	0.00002	Cgg/Tgg	NM_004644.4
OSCJM-PT35-37-T	8120	AP3B2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	83331929	83331929	C	T	A833T	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,15,83331929,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=AP3B2_HUMAN&rb=791&re=990&var=A833T	GRCh37	-1	SNP	novel	.	0.00001	Gct/Act	NM_004644.4
OSCJM-PT50-575-T	8200	GDF5	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					20	34025428	34025428	G	A	P94L	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,20,34025428,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GDF5_HUMAN&rb=1&re=140&var=P94L	GRCh37	-1	SNP	novel	unknown	0	cCc/cTc	NM_000557.2
OSCJM-PT32-489-T	8224	SYN3	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					22	32909744	32909744	C	G	D560H	Missense_Mutation	M	2.05	getma.org/?cm=var&var=hg19,22,32909744,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SYN3_HUMAN&rb=491&re=580&var=D560H	GRCh37	-1	SNP	NA	NA	0	Gac/Cac	NM_001135774.1
OSCJM-PT18-392-T	8224	SYN3	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	32924968	32924968	C	T	G375R	Missense_Mutation	M	3.41	getma.org/?cm=var&var=hg19,22,32924968,C,T&fts=all	getma.org/pdb.php?prot=SYN3_HUMAN&from=193&to=395&var=G375R	getma.org/?cm=msa&ty=f&p=SYN3_HUMAN&rb=193&re=395&var=G375R	GRCh37	-1	SNP	novel	.	0	Gga/Aga	NM_001135774.1
OSCJM-PT32-489-T	8224	SYN3	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	33376670	33376670	C	G	G110A	Missense_Mutation	M	2.54	getma.org/?cm=var&var=hg19,22,33376670,C,G&fts=all	getma.org/pdb.php?prot=SYN3_HUMAN&from=87&to=191&var=G110A	getma.org/?cm=msa&ty=f&p=SYN3_HUMAN&rb=87&re=191&var=G110A	GRCh37	-1	SNP	novel	.	0	gGg/gCg	NM_001135774.1
OSCJM-PT05-91-T	8233	ZRSR2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	15827353	15827353	G	C	E157Q	Missense_Mutation	M	2.515	getma.org/?cm=var&var=hg19,X,15827353,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=U2AFM_HUMAN&rb=84&re=166&var=E157Q	GRCh37	1	SNP	novel	unknown	0	Gaa/Caa	NM_005089.3
OSCJM-PT15-391-T	8287	USP9Y	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					Y	14949968	14949968	G	C	C1776S	Missense_Mutation	H	3.955	getma.org/?cm=var&var=hg19,Y,14949968,G,C&fts=all	getma.org/pdb.php?prot=USP9Y_HUMAN&from=1556&to=1955&var=C1776S	getma.org/?cm=msa&ty=f&p=USP9Y_HUMAN&rb=1556&re=1955&var=C1776S	GRCh37	1	SNP	novel	unknown	0	tGt/tCt	NM_004654.3
OSCJM-PT13-258-T	8288	EPX	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	56274474	56274474	C	T	R326C	Missense_Mutation	H	4.33	getma.org/?cm=var&var=hg19,17,56274474,C,T&fts=all	getma.org/pdb.php?prot=PERE_HUMAN&from=145&to=689&var=R326C	getma.org/?cm=msa&ty=f&p=PERE_HUMAN&rb=145&re=689&var=R326C	GRCh37	1	SNP	novel	unknown	0.00001	Cgc/Tgc	NM_000502.4
OSCJM-PT18-392-T	8289	ARID1A	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	27106283	27106283	C	T	T1965I	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,1,27106283,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ARI1A_HUMAN&rb=1905&re=1974&var=T1965I	GRCh37	1	SNP	novel	.	0	aCc/aTc	NM_006015.4
OSCJM-PT49-537-T	8291	DYSF	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	71801443	71801443	G	A	R1097H	Missense_Mutation	M	2.275	getma.org/?cm=var&var=hg19,2,71801443,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DYSF_HUMAN&rb=1045&re=1153&var=R1097H	GRCh37	1	SNP	novel	unknown	0.00001	cGc/cAc	NM_003494.3,NM_001130976.1
OSCJM-PT45-364-T	8328	GFI1B	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT45-246-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	135862105	135862105	A	T	T14S	Missense_Mutation	L	1.005	getma.org/?cm=var&var=hg19,9,135862105,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=GFI1B_HUMAN&rb=1&re=40&var=T14S	GRCh37	1	SNP	novel	unknown	0	Acc/Tcc	NA
OSCJM-PT03-388-T	8330	HIST1H2AK	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	27805752	27805752	C	G	E122D	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0	gaG/gaC	NM_003510.2
OSCJM-PT50-575-T	8334	HIST1H2AC	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	26124482	26124482	G	T	G8*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,26124482,G,T&fts=all	NA	NA	GRCh37	1	SNP	rs1804839	unknown	0	Gga/Tga	NA
OSCJM-PT03-388-T	8341	HIST1H2BN	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	27806668	27806668	G	T	E77*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,27806668,G,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Gag/Tag	NM_003520.3
OSCJM-PT40-169-T	8367	HIST1H4E	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	26205057	26205057	T	G	F62C	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	tTt/tGt	NM_003545.3
OSCJM-PT22-229-T	8368	HIST1H4L	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	27841108	27841108	C	G	V61L	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	.	0	Gtg/Ctg	NM_003546.2
OSCJM-PT05-91-T	8372	HYAL3	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT05-46-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	50332237	50332237	T	C	E266G	Missense_Mutation	H	3.605	getma.org/?cm=var&var=hg19,3,50332237,T,C&fts=all	getma.org/pdb.php?prot=HYAL3_HUMAN&from=21&to=354&var=E266G	getma.org/?cm=msa&ty=f&p=HYAL3_HUMAN&rb=21&re=354&var=E266G	GRCh37	-1	SNP	novel	unknown	0	gAg/gGg	NM_003549.3,NM_001200029.1
OSCJM-PT45-364-T	8379	MAD1L1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	1937885	1937885	C	T	R650Q	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,7,1937885,C,T&fts=all	getma.org/pdb.php?prot=MD1L1_HUMAN&from=2&to=716&var=R650Q	getma.org/?cm=msa&ty=f&p=MD1L1_HUMAN&rb=2&re=716&var=R650Q	GRCh37	-1	SNP	novel	unknown	0.00004	cGg/cAg	NA
OSCJM-PT49-537-T	8405	SPOP	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	47699400	47699400	C	T	W36*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,47699400,C,T&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	tgG/tgA	NM_001007230.1,NM_001007229.1
OSCJM-PT36-331-T	8412	BCAR3	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	94140407	94140407	A	G	L27P	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,1,94140407,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=BCAR3_HUMAN&rb=1&re=105&var=L27P	GRCh37	-1	SNP	novel	.	0	cTt/cCt	NM_003567.3
OSCJM-PT37-513-T	8438	RAD54L	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	46726980	46726980	A	T	I272F	Missense_Mutation	M	3.005	getma.org/?cm=var&var=hg19,1,46726980,A,T&fts=all	getma.org/pdb.php?prot=RAD54_HUMAN&from=156&to=463&var=I272F	getma.org/?cm=msa&ty=f&p=RAD54_HUMAN&rb=156&re=463&var=I272F	GRCh37	1	SNP	novel	.	0	Atc/Ttc	NM_003579.3
OSCJM-PT50-575-T	8473	OGT	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT50-81-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	70783248	70783248	A	G	M779V	Missense_Mutation	N	-1.87	getma.org/?cm=var&var=hg19,X,70783248,A,G&fts=all	getma.org/pdb.php?prot=OGT1_HUMAN&from=556&to=1024&var=M779V	getma.org/?cm=msa&ty=f&p=OGT1_HUMAN&rb=556&re=1024&var=M779V	GRCh37	1	SNP	novel	unknown	0	Atg/Gtg	NM_181673.2,NM_181672.2
OSCJM-PTD-578-T	8481	OFD1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	13769430	13769430	A	G	Q333R	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,X,13769430,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=OFD1_HUMAN&rb=1&re=1010&var=Q333R	GRCh37	1	SNP	NA	NA	0	cAg/cGg	NM_003611.2
OSCJM-PT03-388-T	8493	PPM1D	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	58740529	58740529	C	A	C478*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,58740529,C,A&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0.00003	tgC/tgA	NM_003620.3
OSCJM-PT21-238-T	8495	PPFIBP2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT21-231-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	7673035	7673035	C	T	S799L	Missense_Mutation	L	1.9	getma.org/?cm=var&var=hg19,11,7673035,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LIPB2_HUMAN&rb=786&re=876&var=S799L	GRCh37	1	SNP	novel	.	0	tCa/tTa	NM_003621.3
OSCJM-PT40-169-T	8496	PPFIBP1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT40-108-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	27829391	27829391	G	T	G498W	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,12,27829391,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LIPB1_HUMAN&rb=291&re=569&var=G498W	GRCh37	1	SNP	NA	NA	0	Ggg/Tgg	NM_177444.2,NM_001198916.1
OSCJM-PT50-575-T	8497	PPFIA4	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	203025919	203025919	G	A	E728K	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,1,203025919,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=LIPA4_HUMAN&rb=201&re=342&var=E244K	GRCh37	1	SNP	novel	unknown	0	Gag/Aag	NA
OSCJM-PT12-478-T	8506	CNTNAP1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	40842824	40842824	G	A	M641I	Missense_Mutation	N	-0.345	getma.org/?cm=var&var=hg19,17,40842824,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNTP1_HUMAN&rb=576&re=795&var=M641I	GRCh37	1	SNP	NA	NA	0	atG/atA	NM_003632.2
OSCJM-PT32-489-T	8516	ITGA8	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	15726024	15726024	C	A	E183*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,10,15726024,C,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Gag/Tag	NM_003638.1
OSCJM-PT03-388-T	8518	ELP1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	111640918	111640918	T	A	T1229S	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,9,111640918,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ELP1_HUMAN&rb=1155&re=1332&var=T1229S	GRCh37	-1	SNP	NA	NA	0	Act/Tct	NM_003640.3
OSCJM-PT01-166-T	8535	CBX4	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	77807811	77807811	C	T	D544N	Missense_Mutation	L	1.32	getma.org/?cm=var&var=hg19,17,77807811,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CBX4_HUMAN&rb=81&re=558&var=D544N	GRCh37	-1	SNP	NA	NA	0	Gac/Aac	NM_003655.2
OSCJM-PT22-229-T	8537	BCAS1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	52645142	52645142	G	A	T171M	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,20,52645142,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=BCAS1_HUMAN&rb=1&re=582&var=T171M	GRCh37	-1	SNP	novel	.	0.001	aCg/aTg	NM_003657.2
OSCJM-PT33-288-T	8573	CASK	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	41712457	41712457	C	T	R28Q	Missense_Mutation	N	0.105	getma.org/?cm=var&var=hg19,X,41712457,C,T&fts=all	getma.org/pdb.php?prot=CSKP_HUMAN&from=12&to=276&var=R28Q	getma.org/?cm=msa&ty=f&p=CSKP_HUMAN&rb=12&re=276&var=R28Q	GRCh37	-1	SNP	rs137852816	NA	0	cGa/cAa	NA
OSCJM-PT43-201-T	8590	OR6A2	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT43-326-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	6816821	6816821	A	T	L40Q	Missense_Mutation	M	2.985	getma.org/?cm=var&var=hg19,11,6816821,A,T&fts=all	getma.org/pdb.php?prot=OR6A2_HUMAN&from=1&to=143&var=L40Q	getma.org/?cm=msa&ty=f&p=OR6A2_HUMAN&rb=1&re=143&var=L40Q	GRCh37	-1	SNP	novel	unknown	0	cTg/cAg	NM_003696.2
OSCJM-PT07-43-T	8603	FAM193A	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	2701486	2701486	A	G	E905G	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,4,2701486,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=F193A_HUMAN&rb=885&re=936&var=E905G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_001256666.1
OSCJM-PT11-385-T	8605	PLA2G4C	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT11-517-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					19	48578033	48578033	C	T	E333K	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,19,48578033,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PA24C_HUMAN&rb=285&re=333&var=E333K	GRCh37	-1	SNP	NA	NA	0.00002	Gaa/Aaa	NA
OSCJM-PT35-37-T	8614	STC2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	172750267	172750267	C	T	R154Q	Missense_Mutation	N	-1.5	getma.org/?cm=var&var=hg19,5,172750267,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=STC2_HUMAN&rb=6&re=220&var=R154Q	GRCh37	-1	SNP	novel	.	0.0007	cGg/cAg	NM_003714.2
OSCJM-PT14-353-T	8623	ASMTL	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PT14-504-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					Y	1472164	1472164	A	-	*622E	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	Tga/ga	NM_004192.3
OSCJM-PT03-388-T	8626	TP63	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	189456461	189456461	G	C	L74F	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,3,189456461,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=P63_HUMAN&rb=1&re=162&var=L74F	GRCh37	1	SNP	NA	NA	0	ttG/ttC	NM_003722.4,NM_001114978.1
OSCJM-PT43-201-T	8626	TP63	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	189526076	189526076	C	G	L114V	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,3,189526076,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=P63_HUMAN&rb=1&re=162&var=L114V	GRCh37	1	SNP	novel	unknown	0.00001	Ctg/Gtg	NM_003722.4,NM_001114978.1
OSCJM-PT45-364-T	8626	TP63	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT45-246-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	189585665	189585665	A	G	N309S	Missense_Mutation	M	2.685	getma.org/?cm=var&var=hg19,3,189585665,A,G&fts=all	getma.org/pdb.php?prot=P63_HUMAN&from=163&to=359&var=N309S	getma.org/?cm=msa&ty=f&p=P63_HUMAN&rb=163&re=359&var=N309S	GRCh37	1	SNP	novel	unknown	0	aAc/aGc	NM_003722.4,NM_001114978.1
OSCJM-PT46-394-T	8638	OASL	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	121458519	121458519	C	G	E464Q	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,12,121458519,C,G&fts=all	getma.org/pdb.php?prot=OASL_HUMAN&from=439&to=507&var=E464Q	getma.org/?cm=msa&ty=f&p=OASL_HUMAN&rb=439&re=507&var=E464Q	GRCh37	-1	SNP	novel	unknown	0	Gaa/Caa	NM_003733.3
OSCJM-PT14-353-T	8650	NUMB	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	73743353	73743353	C	T	R630H	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,14,73743353,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NUMB_HUMAN&rb=540&re=651&var=R630H	GRCh37	-1	SNP	novel	unknown	0.0001	cGt/cAt	NA
OSCJM-PT35-37-T	8651	SOCS1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	11348706	11348706	C	G	Q210H	Missense_Mutation	L	1.53	getma.org/?cm=var&var=hg19,16,11348706,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SOCS1_HUMAN&rb=161&re=210&var=Q210H	GRCh37	-1	SNP	NA	NA	0.0059	caG/caC	NM_003745.1
OSCJM-PT12-478-T	8667	EIF3H	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	117768011	117768011	C	A	G9V	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,8,117768011,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=EIF3H_HUMAN&rb=1&re=33&var=G9V	GRCh37	-1	SNP	novel	unknown	0.0001	gGc/gTc	NM_003756.2
OSCJM-PT36-331-T	8675	STX16	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	57227112	57227112	C	T	S17F	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,20,57227112,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=STX16_HUMAN&rb=1&re=73&var=S17F	GRCh37	1	SNP	novel	.	0	tCc/tTc	NM_001001433.2
OSCJM-PT36-331-T	8675	STX16	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	57227153	57227153	C	A	H31N	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,20,57227153,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=STX16_HUMAN&rb=1&re=73&var=H31N	GRCh37	1	SNP	novel	.	0	Cac/Aac	NM_001001433.2
OSCJM-PT07-43-T	8683	SRSF9	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	120907309	120907309	T	A	Y35F	Missense_Mutation	N	0.77	getma.org/?cm=var&var=hg19,12,120907309,T,A&fts=all	getma.org/pdb.php?prot=SRSF9_HUMAN&from=16&to=83&var=Y35F	getma.org/?cm=msa&ty=f&p=SRSF9_HUMAN&rb=16&re=83&var=Y35F	GRCh37	-1	SNP	novel	unknown	0.0222	tAc/tTc	NM_003769.2
OSCJM-PT11-385-T	8701	DNAH11	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	21784487	21784487	G	T	X2773_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	NA	NM_001277115.1
OSCJM-PT50-575-T	8706	B3GALNT1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	160803963	160803963	G	T	L194I	Missense_Mutation	L	1.4	getma.org/?cm=var&var=hg19,3,160803963,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=B3GL1_HUMAN&rb=92&re=285&var=L194I	GRCh37	-1	SNP	novel	unknown	0	Ctt/Att	NM_003781.3,NM_033169.2
OSCJM-PT40-169-T	8714	ABCC3	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT40-108-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	48741404	48741404	G	T	A424S	Missense_Mutation	N	0.595	getma.org/?cm=var&var=hg19,17,48741404,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MRP3_HUMAN&rb=311&re=582&var=A424S	GRCh37	1	SNP	novel	unknown	0	Gcc/Tcc	NM_003786.3
OSCJM-PT43-201-T	8715	NOL4	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	31599374	31599374	C	T	D322N	Missense_Mutation	N	0.625	getma.org/?cm=var&var=hg19,18,31599374,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NOL4_HUMAN&rb=1&re=636&var=D322N	GRCh37	-1	SNP	novel	unknown	0	Gat/Aat	NM_001198546.1,NM_003787.4
OSCJM-PT49-537-T	8726	EED	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT49-585-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	85988143	85988143	T	C	I363T	Missense_Mutation	M	2.455	getma.org/?cm=var&var=hg19,11,85988143,T,C&fts=all	getma.org/pdb.php?prot=EED_HUMAN&from=265&to=441&var=I363T	getma.org/?cm=msa&ty=f&p=EED_HUMAN&rb=265&re=441&var=I363T	GRCh37	1	SNP	novel	unknown	0	aTt/aCt	NM_003797.3
OSCJM-PTD-578-T	8732	RNGTT	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	89650812	89650812	G	C	S51*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,89650812,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tCa/tGa	NM_003800.3
OSCJM-PT37-513-T	8733	GPAA1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	145140492	145140492	G	A	A490T	Missense_Mutation	N	0.455	getma.org/?cm=var&var=hg19,8,145140492,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GPAA1_HUMAN&rb=124&re=621&var=A490T	GRCh37	1	SNP	novel	.	0	Gcc/Acc	NM_003801.3
OSCJM-PT28-298-T	8736	MYOM1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT28-437-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					18	3119920	3119920	G	C	P1022R	Missense_Mutation	M	3.005	getma.org/?cm=var&var=hg19,18,3119920,G,C&fts=all	getma.org/pdb.php?prot=MYOM1_HUMAN&from=935&to=1023&var=P1022R	getma.org/?cm=msa&ty=f&p=MYOM1_HUMAN&rb=935&re=1023&var=P1022R	GRCh37	-1	SNP	novel	.	0	cCc/cGc	NM_019856.1,NM_003803.3
OSCJM-PT20-600-T	8744	TNFSF9	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	6534622	6534622	G	C	D104H	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,19,6534622,G,C&fts=all	getma.org/pdb.php?prot=TNFL9_HUMAN&from=1&to=106&var=D104H	getma.org/?cm=msa&ty=f&p=TNFL9_HUMAN&rb=1&re=106&var=D104H	GRCh37	1	SNP	novel	.	0	Gat/Cat	NM_003811.3
OSCJM-PTA-367-T	8745	ADAM23	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PTA-308-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	207424812	207424812	A	T	K380M	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,2,207424812,A,T&fts=all	getma.org/pdb.php?prot=ADA23_HUMAN&from=299&to=496&var=K380M	getma.org/?cm=msa&ty=f&p=ADA23_HUMAN&rb=299&re=496&var=K380M	GRCh37	1	SNP	novel	unknown	0	aAg/aTg	NM_003812.3
OSCJM-PT01-166-T	8747	ADAM21	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					14	70924430	70924430	C	T	H72Y	Missense_Mutation	L	1.19	getma.org/?cm=var&var=hg19,14,70924430,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ADA21_HUMAN&rb=40&re=159&var=H72Y	GRCh37	1	SNP	NA	NA	0	Cac/Tac	NM_003813.3
OSCJM-PT14-353-T	8785	MATN4	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					20	43929646	43929646	C	T	R339Q	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,20,43929646,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MATN4_HUMAN&rb=296&re=385&var=R339Q	GRCh37	-1	SNP	novel	unknown	0.00004	cGg/cAg	NA
OSCJM-PT07-43-T	8790	FPGT	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	74671407	74671407	A	G	Y559C	Missense_Mutation	L	1.61	getma.org/?cm=var&var=hg19,1,74671407,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=FPGT_HUMAN&rb=536&re=594&var=Y559C	GRCh37	1	SNP	NA	NA	0.00005	tAt/tGt	NA
OSCJM-PTA-367-T	8803	SUCLA2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					13	48528631	48528631	G	C	I288M	Missense_Mutation	M	2.29	getma.org/?cm=var&var=hg19,13,48528631,G,C&fts=all	getma.org/pdb.php?prot=SUCB1_HUMAN&from=61&to=288&var=I288M	getma.org/?cm=msa&ty=f&p=SUCB1_HUMAN&rb=61&re=288&var=I288M	GRCh37	-1	SNP	NA	NA	0	atC/atG	NM_003850.2
OSCJM-PT15-391-T	8808	IL1RL2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	102808561	102808561	G	A	G157D	Missense_Mutation	N	-1.64	getma.org/?cm=var&var=hg19,2,102808561,G,A&fts=all	getma.org/pdb.php?prot=ILRL2_HUMAN&from=125&to=214&var=G157D	getma.org/?cm=msa&ty=f&p=ILRL2_HUMAN&rb=125&re=214&var=G157D	GRCh37	1	SNP	novel	unknown	0	gGt/gAt	NM_003854.2
OSCJM-PT46-394-T	8816	DCAF5	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	69558468	69558468	C	T	V268M	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,14,69558468,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DCAF5_HUMAN&rb=172&re=276&var=V268M	GRCh37	-1	SNP	novel	unknown	0	Gtg/Atg	NM_003861.2,NM_001284207.1
OSCJM-PT32-489-T	8846	ALKBH1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	78161201	78161201	C	T	W112*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,14,78161201,C,T&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tGg/tAg	NM_006020.2
OSCJM-PTB-347-T	8851	CDK5R1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	30815186	30815186	G	A	R183H	Missense_Mutation	M	2.725	getma.org/?cm=var&var=hg19,17,30815186,G,A&fts=all	getma.org/pdb.php?prot=CD5R1_HUMAN&from=1&to=296&var=R183H	getma.org/?cm=msa&ty=f&p=CD5R1_HUMAN&rb=1&re=296&var=R183H	GRCh37	1	SNP	novel	unknown	0	cGc/cAc	NM_003885.2
OSCJM-PT40-169-T	8863	PER3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT40-108-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	7890053	7890053	G	A	A1007T	Missense_Mutation	N	0.6	getma.org/?cm=var&var=hg19,1,7890053,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PER3_HUMAN&rb=987&re=1195&var=A1007T	GRCh37	1	SNP	NA	NA	0	Gct/Act	NM_016831.1
OSCJM-PTA-367-T	8864	PER2	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					2	239180022	239180022	C	T	D235N	Missense_Mutation	M	2.775	getma.org/?cm=var&var=hg19,2,239180022,C,T&fts=all	getma.org/pdb.php?prot=PER2_HUMAN&from=181&to=248&var=D235N	getma.org/?cm=msa&ty=f&p=PER2_HUMAN&rb=181&re=248&var=D235N	GRCh37	-1	SNP	NA	NA	0.00001	Gat/Aat	NM_022817.2
OSCJM-PT49-537-T	8876	VNN1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	133032885	133032885	G	T	P102T	Missense_Mutation	M	3.01	getma.org/?cm=var&var=hg19,6,133032885,G,T&fts=all	getma.org/pdb.php?prot=VNN1_HUMAN&from=27&to=261&var=P102T	getma.org/?cm=msa&ty=f&p=VNN1_HUMAN&rb=27&re=261&var=P102T	GRCh37	-1	SNP	novel	unknown	0	Cct/Act	NM_004666.2
OSCJM-PT50-575-T	8880	FUBP1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT50-81-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	78428486	78428486	T	C	Y438C	Missense_Mutation	L	1.495	getma.org/?cm=var&var=hg19,1,78428486,T,C&fts=all	getma.org/pdb.php?prot=FUBP1_HUMAN&from=378&to=443&var=Y438C	getma.org/?cm=msa&ty=f&p=FUBP1_HUMAN&rb=378&re=443&var=Y438C	GRCh37	-1	SNP	rs61758966	unknown	0.00002	tAt/tGt	NM_003902.3
OSCJM-PT46-394-T	8899	PRPF4B	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	4060758	4060758	G	A	D978N	Missense_Mutation	M	2.13	getma.org/?cm=var&var=hg19,6,4060758,G,A&fts=all	getma.org/pdb.php?prot=PRP4B_HUMAN&from=687&to=1003&var=D978N	getma.org/?cm=msa&ty=f&p=PRP4B_HUMAN&rb=687&re=1003&var=D978N	GRCh37	1	SNP	novel	unknown	0	Gac/Aac	NM_003913.4
OSCJM-PT42-193-T	8906	AP1G2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	24034342	24034342	C	G	D270H	Missense_Mutation	H	3.78	getma.org/?cm=var&var=hg19,14,24034342,C,G&fts=all	getma.org/pdb.php?prot=AP1G2_HUMAN&from=24&to=575&var=D270H	getma.org/?cm=msa&ty=f&p=AP1G2_HUMAN&rb=24&re=575&var=D270H	GRCh37	-1	SNP	novel	unknown	0	Gac/Cac	NM_003917.2
OSCJM-PT03-388-T	8924	HERC2	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	28437134	28437134	G	T	C2808*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,15,28437134,G,T&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tgC/tgA	NM_004667.5
OSCJM-PT41-180-T	8924	HERC2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT41-594-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	28491920	28491920	T	C	E1120G	Missense_Mutation	N	0.585	getma.org/?cm=var&var=hg19,15,28491920,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=HERC2_HUMAN&rb=925&re=1124&var=E1120G	GRCh37	-1	SNP	novel	unknown	0	gAg/gGg	NM_004667.5
OSCJM-PT01-166-T	8970	HIST1H2BJ	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	27100520	27100520	G	T	P4T	Missense_Mutation	M	2.075	getma.org/?cm=var&var=hg19,6,27100520,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=H2B1J_HUMAN&rb=1&re=31&var=P4T	GRCh37	-1	SNP	NA	NA	0	Cca/Aca	NA
OSCJM-PT25-327-T	8972	MGAM	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT25-74-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	141724849	141724849	G	A	X295_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	.	0	NA	NM_004668.2
OSCJM-PT49-537-T	8972	MGAM	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	141762499	141762499	G	A	W1418*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,7,141762499,G,A&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	tgG/tgA	NM_004668.2
OSCJM-PT13-258-T	8975	USP13	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	179426667	179426667	G	A	G243R	Missense_Mutation	L	1.835	getma.org/?cm=var&var=hg19,3,179426667,G,A&fts=all	getma.org/pdb.php?prot=UBP13_HUMAN&from=211&to=284&var=G243R	getma.org/?cm=msa&ty=f&p=UBP13_HUMAN&rb=211&re=284&var=G243R	GRCh37	1	SNP	novel	unknown	0.00001	Ggg/Agg	NM_003940.2
OSCJM-PT32-489-T	8997	KALRN	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	124369736	124369736	C	T	P218S	Missense_Mutation	M	2.445	getma.org/?cm=var&var=hg19,3,124369736,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=KALRN_HUMAN&rb=1856&re=1931&var=P1914S	GRCh37	1	SNP	NA	NA	0	Cct/Tct	NM_007064.3
OSCJM-PT25-327-T	8997	KALRN	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT25-74-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	124017695	124017695	G	A	G341R	Missense_Mutation	M	2.525	getma.org/?cm=var&var=hg19,3,124017695,G,A&fts=all	getma.org/pdb.php?prot=KALRN_HUMAN&from=310&to=416&var=G341R	getma.org/?cm=msa&ty=f&p=KALRN_HUMAN&rb=310&re=416&var=G341R	GRCh37	1	SNP	not_in_dbSNP	NA	0	Gga/Aga	NM_003947.4
OSCJM-PTB-347-T	9031	BAZ1B	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	72858358	72858358	G	A	Q1316*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,7,72858358,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_032408.3
OSCJM-PT20-600-T	9038	TAAR5	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	132910069	132910069	T	C	T253A	Missense_Mutation	H	3.84	getma.org/?cm=var&var=hg19,6,132910069,T,C&fts=all	getma.org/pdb.php?prot=TAAR5_HUMAN&from=51&to=305&var=T253A	getma.org/?cm=msa&ty=f&p=TAAR5_HUMAN&rb=51&re=305&var=T253A	GRCh37	-1	SNP	novel	.	0	Acc/Gcc	NM_003967.2
OSCJM-PTD-578-T	9044	BTAF1	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	93740247	93740247	A	T	M563L	Missense_Mutation	N	0.535	getma.org/?cm=var&var=hg19,10,93740247,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=BTAF1_HUMAN&rb=401&re=585&var=M563L	GRCh37	1	SNP	NA	NA	0	Atg/Ttg	NM_003972.2
OSCJM-PT41-180-T	9044	BTAF1	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT41-594-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	93776095	93776095	A	T	X1529_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	NA	NM_003972.2
OSCJM-PT05-91-T	9057	SLC7A6	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	68330382	68330382	G	A	R412H	Missense_Mutation	H	4.165	getma.org/?cm=var&var=hg19,16,68330382,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=YLAT2_HUMAN&rb=45&re=465&var=R412H	GRCh37	1	SNP	novel	unknown	0.00001	cGc/cAc	NM_003983.5
OSCJM-PTB-347-T	9060	PAPSS2	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PTB-173-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	89503158	89503158	T	A	N412K	Missense_Mutation	H	4.425	getma.org/?cm=var&var=hg19,10,89503158,T,A&fts=all	getma.org/pdb.php?prot=PAPS2_HUMAN&from=383&to=608&var=N412K	getma.org/?cm=msa&ty=f&p=PAPS2_HUMAN&rb=383&re=608&var=N412K	GRCh37	1	SNP	novel	unknown	0	aaT/aaA	NM_004670.3
OSCJM-PT07-43-T	9064	MAP3K6	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	27682581	27682581	G	C	S1216*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,27682581,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tCa/tGa	NA
OSCJM-PT07-43-T	9092	SART1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	65735174	65735174	G	C	G485A	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,11,65735174,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SNUT1_HUMAN&rb=116&re=754&var=G485A	GRCh37	1	SNP	rs660118	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.4739	gGg/gCg	NM_005146.4
OSCJM-PT14-353-T	9096	TBX18	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	85454036	85454036	C	T	R316H	Missense_Mutation	M	2.155	getma.org/?cm=var&var=hg19,6,85454036,C,T&fts=all	getma.org/pdb.php?prot=TBX18_HUMAN&from=140&to=331&var=R316H	getma.org/?cm=msa&ty=f&p=TBX18_HUMAN&rb=140&re=331&var=R316H	GRCh37	-1	SNP	novel	.	0	cGc/cAc	NM_001080508.2
OSCJM-PTC-139-T	9098	USP6	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	5036224	5036224	C	G	T72R	Missense_Mutation	N	-0.83	getma.org/?cm=var&var=hg19,17,5036224,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBP6_HUMAN&rb=1&re=102&var=T72R	GRCh37	1	SNP	rs72830922	NA	0.3608	aCa/aGa	NM_004505.2
OSCJM-PTD-578-T	9101	USP8	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	50769638	50769638	C	G	S387C	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,15,50769638,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBP8_HUMAN&rb=351&re=729&var=S387C	GRCh37	1	SNP	NA	NA	0	tCt/tGt	NA
OSCJM-PT05-91-T	9101	USP8	hgsc.bcm.edu	Illumina	Somatic	A	C	OSCJM-PT05-46-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	50773729	50773729	A	C	K424Q	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,15,50773729,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBP8_HUMAN&rb=351&re=729&var=K424Q	GRCh37	1	SNP	novel	unknown	0	Aaa/Caa	NA
OSCJM-PT05-91-T	9108	MTMR7	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					8	17161931	17161931	C	T	G484R	Missense_Mutation	L	1.015	getma.org/?cm=var&var=hg19,8,17161931,C,T&fts=all	getma.org/pdb.php?prot=MTMR7_HUMAN&from=126&to=504&var=G484R	getma.org/?cm=msa&ty=f&p=MTMR7_HUMAN&rb=126&re=504&var=G484R	GRCh37	-1	SNP	novel	unknown	0	Gga/Aga	NM_004686.4
OSCJM-PT41-180-T	9111	NMI	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	152135411	152135411	G	A	Q91*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,152135411,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Caa/Taa	NM_004688.2
OSCJM-PT05-91-T	9123	SLC16A3	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	80195666	80195666	C	G	F340L	Missense_Mutation	M	2.765	getma.org/?cm=var&var=hg19,17,80195666,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MOT4_HUMAN&rb=246&re=450&var=F340L	GRCh37	1	SNP	NA	NA	0	ttC/ttG	NM_001042423.2
OSCJM-PTD-578-T	9134	CCNE2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	95894373	95894373	T	C	Y363C	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,8,95894373,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CCNE2_HUMAN&rb=241&re=363&var=Y363C	GRCh37	-1	SNP	NA	NA	0	tAt/tGt	NM_057749.2
OSCJM-PT35-37-T	9138	ARHGEF1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT35-339-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	42396429	42396429	G	A	V118I	Missense_Mutation	N	0.745	getma.org/?cm=var&var=hg19,19,42396429,G,A&fts=all	getma.org/pdb.php?prot=ARHG1_HUMAN&from=42&to=232&var=V118I	getma.org/?cm=msa&ty=f&p=ARHG1_HUMAN&rb=42&re=232&var=V118I	GRCh37	1	SNP	novel	.	0	Gtc/Atc	NM_004706.3
OSCJM-PT22-229-T	9162	DGKI	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	137304604	137304604	G	A	P320L	Missense_Mutation	M	2.49	getma.org/?cm=var&var=hg19,7,137304604,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DGKI_HUMAN&rb=311&re=375&var=P320L	GRCh37	-1	SNP	novel	Unknown	0.00001	cCg/cTg	NM_004717.2
OSCJM-PT49-537-T	9169	SCAF11	hgsc.bcm.edu	Illumina	Somatic	T	-	OSCJM-PT49-585-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					12	46320005	46320005	T	-	N1160Tfs*18	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	aAc/ac	NM_004719.2
OSCJM-PT49-537-T	9183	ZW10	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT49-585-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	113608353	113608353	T	C	M653V	Missense_Mutation	L	1.18	getma.org/?cm=var&var=hg19,11,113608353,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZW10_HUMAN&rb=622&re=779&var=M653V	GRCh37	-1	SNP	novel	unknown	0.00001	Atg/Gtg	NM_004724.3
OSCJM-PT25-327-T	9201	DCLK1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT25-74-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	36428697	36428697	G	A	P325L	Missense_Mutation	M	2.31	getma.org/?cm=var&var=hg19,13,36428697,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DCLK1_HUMAN&rb=265&re=389&var=P325L	GRCh37	-1	SNP	novel	.	0	cCg/cTg	NA
OSCJM-PT36-331-T	9211	LGI1	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	95556746	95556746	A	T	K287M	Missense_Mutation	M	2.28	getma.org/?cm=var&var=hg19,10,95556746,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LGI1_HUMAN&rb=270&re=313&var=K287M	GRCh37	1	SNP	novel	.	0	aAg/aTg	NM_005097.2
OSCJM-PT40-169-T	9213	XPR1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	180794421	180794421	C	T	L359F	Missense_Mutation	M	2.015	getma.org/?cm=var&var=hg19,1,180794421,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=XPR1_HUMAN&rb=267&re=618&var=L359F	GRCh37	1	SNP	NA	NA	0	Ctt/Ttt	NM_004736.3
OSCJM-PT01-166-T	9228	DLGAP2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	1616801	1616801	C	T	A626V	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,8,1616801,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DLGP2_HUMAN&rb=702&re=1054&var=A705V	GRCh37	1	SNP	novel	unknown	0.0005	gCg/gTg	NM_004745.4,NM_001277161.1
OSCJM-PT40-169-T	9235	IL32	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PT40-108-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					16	3119297	3119298	-	G	D218Gfs*12	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0.4113	cgg/cGgg	NA
OSCJM-PT01-166-T	9247	GCM2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	10877388	10877388	G	A	R110W	Missense_Mutation	M	2.705	getma.org/?cm=var&var=hg19,6,10877388,G,A&fts=all	getma.org/pdb.php?prot=GCM2_HUMAN&from=34&to=174&var=R110W	getma.org/?cm=msa&ty=f&p=GCM2_HUMAN&rb=34&re=174&var=R110W	GRCh37	-1	SNP	NA	NA	0.00001	Cgg/Tgg	NM_004752.3
OSCJM-PT03-388-T	9256	TSPOAP1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	56389747	56389747	T	C	E812G	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,17,56389747,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RIMB1_HUMAN&rb=791&re=868&var=E812G	GRCh37	-1	SNP	novel	unknown	0	gAg/gGg	NA
OSCJM-PT12-478-T	9256	TSPOAP1	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	56404137	56404137	C	G	M116I	Missense_Mutation	L	0.92	getma.org/?cm=var&var=hg19,17,56404137,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=RIMB1_HUMAN&rb=1&re=200&var=M116I	GRCh37	-1	SNP	novel	unknown	0	atG/atC	NA
OSCJM-PT10-325-T	9260	PDLIM7	hgsc.bcm.edu	Illumina	Somatic	-	AGCTGGG	OSCJM-PT10-70-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					5	176915097	176915098	-	AGCTGGG	C341Sfs*55	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0	tgt/tCCCAGCTgt	NM_005451.4
OSCJM-PT15-391-T	9308	CD83	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT15-284-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	14131779	14131779	A	G	E61G	Missense_Mutation	L	1.295	getma.org/?cm=var&var=hg19,6,14131779,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CD83_HUMAN&rb=13&re=126&var=E61G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_001040280.1,NM_004233.3,NM_001251901.1
OSCJM-PT41-180-T	9348	NDST3	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	119176842	119176842	G	C	R866T	Missense_Mutation	M	2.535	getma.org/?cm=var&var=hg19,4,119176842,G,C&fts=all	getma.org/pdb.php?prot=NDST3_HUMAN&from=859&to=873&var=R866T	getma.org/?cm=msa&ty=f&p=NDST3_HUMAN&rb=829&re=873&var=R866T	GRCh37	1	SNP	novel	unknown	0	aGa/aCa	NM_004784.2
OSCJM-PT32-489-T	9353	SLIT2	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	20619185	20619185	G	T	K1420N	Missense_Mutation	L	0.98	getma.org/?cm=var&var=hg19,4,20619185,G,T&fts=all	getma.org/pdb.php?prot=SLIT2_HUMAN&from=1317&to=1516&var=K1420N	getma.org/?cm=msa&ty=f&p=SLIT2_HUMAN&rb=1317&re=1516&var=K1420N	GRCh37	1	SNP	rs111791287	NA	0.00001	aaG/aaT	NM_004787.1
OSCJM-PTB-347-T	9353	SLIT2	hgsc.bcm.edu	Cross	Somatic	A	G	OSCJM-PTB-173-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					4	20512118	20512118	A	G	I305M	Missense_Mutation	L	1.435	getma.org/?cm=var&var=hg19,4,20512118,A,G&fts=all	getma.org/pdb.php?prot=SLIT2_HUMAN&from=300&to=360&var=I305M	getma.org/?cm=msa&ty=f&p=SLIT2_HUMAN&rb=300&re=360&var=I305M	GRCh37	1	SNP	novel	unknown	0	atA/atG	NM_004787.1
OSCJM-PT07-43-T	9354	UBE4A	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	118243810	118243810	A	C	D244A	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,11,118243810,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBE4A_HUMAN&rb=201&re=329&var=D244A	GRCh37	1	SNP	NA	NA	0	gAt/gCt	NM_001204077.1,NM_004788.3
OSCJM-PT45-364-T	9372	ZFYVE9	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	52759126	52759126	G	A	G1009G	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	ggG/ggA	NM_004799.3
OSCJM-PTC-139-T	9372	ZFYVE9	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTC-295-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	52703589	52703589	A	G	Q167R	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,1,52703589,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZFYV9_HUMAN&rb=1&re=664&var=Q167R	GRCh37	1	SNP	novel	unknown	0	cAg/cGg	NM_004799.3
OSCJM-PT11-385-T	9378	NRXN1	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT11-517-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					2	50280513	50280513	C	T	A1312T	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,2,50280513,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NRX1B_HUMAN&rb=241&re=440&var=A277T	GRCh37	-1	SNP	NA	NA	0	Gcc/Acc	NM_004801.4
OSCJM-PT20-600-T	9378	NRXN1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	50850741	50850741	T	A	Y282F	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,2,50850741,T,A&fts=all	getma.org/pdb.php?prot=NRX1A_HUMAN&from=193&to=311&var=Y282F	getma.org/?cm=msa&ty=f&p=NRX1A_HUMAN&rb=193&re=311&var=Y282F	GRCh37	-1	SNP	novel	.	0	tAt/tTt	NM_004801.4
OSCJM-PT37-513-T	9378	NRXN1	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	50170868	50170868	G	T	P1367H	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,2,50170868,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NRX1B_HUMAN&rb=241&re=440&var=P332H	GRCh37	-1	SNP	novel	.	0	cCc/cAc	NM_004801.4
OSCJM-PT10-325-T	9379	NRXN2	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT10-70-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	64415739	64415739	T	G	T1119P	Missense_Mutation	H	3.555	getma.org/?cm=var&var=hg19,11,64415739,T,G&fts=all	getma.org/pdb.php?prot=NRX2A_HUMAN&from=1096&to=1133&var=T1119P	getma.org/?cm=msa&ty=f&p=NRX2A_HUMAN&rb=1096&re=1133&var=T1119P	GRCh37	-1	SNP	NA	NA	0	Acc/Ccc	NM_015080.3
OSCJM-PT11-385-T	9379	NRXN2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT11-517-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	64419615	64419615	C	T	E810K	Missense_Mutation	L	1.74	getma.org/?cm=var&var=hg19,11,64419615,C,T&fts=all	getma.org/pdb.php?prot=NRX2A_HUMAN&from=760&to=890&var=E810K	getma.org/?cm=msa&ty=f&p=NRX2A_HUMAN&rb=760&re=890&var=E810K	GRCh37	-1	SNP	NA	NA	0.00001	Gaa/Aaa	NM_015080.3
OSCJM-PT01-166-T	9401	RECQL4	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					8	145738768	145738768	G	-	X766_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0.9999	Cgg/gg	NM_004260.3
OSCJM-PT03-388-T	9402	GRAP2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	40364200	40364200	C	T	P205L	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,22,40364200,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=GRAP2_HUMAN&rb=133&re=276&var=P205L	GRCh37	1	SNP	NA	NA	0.00005	cCg/cTg	NM_004810.2
OSCJM-PTD-578-T	9411	ARHGAP29	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	94640144	94640144	C	G	D1023H	Missense_Mutation	L	1.385	getma.org/?cm=var&var=hg19,1,94640144,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=RHG29_HUMAN&rb=955&re=1259&var=D1023H	GRCh37	-1	SNP	NA	NA	0	Gat/Cat	NM_004815.3
OSCJM-PT22-229-T	9411	ARHGAP29	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	94650562	94650562	G	C	H659D	Missense_Mutation	M	2.085	getma.org/?cm=var&var=hg19,1,94650562,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RHG29_HUMAN&rb=613&re=660&var=H659D	GRCh37	-1	SNP	novel	.	0	Cat/Gat	NM_004815.3
OSCJM-PT28-298-T	9411	ARHGAP29	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT28-437-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	94639732	94639732	G	C	P1160R	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,1,94639732,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RHG29_HUMAN&rb=955&re=1259&var=P1160R	GRCh37	-1	SNP	novel	.	0	cCt/cGt	NM_004815.3
OSCJM-PT50-575-T	9414	TJP2	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT50-81-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	71840285	71840285	A	G	K340E	Missense_Mutation	L	1.83	getma.org/?cm=var&var=hg19,9,71840285,A,G&fts=all	getma.org/pdb.php?prot=ZO2_HUMAN&from=298&to=382&var=K340E	getma.org/?cm=msa&ty=f&p=ZO2_HUMAN&rb=298&re=382&var=K340E	GRCh37	1	SNP	novel	unknown	0.00001	Aaa/Gaa	NM_004817.3
OSCJM-PT46-394-T	9420	CYP7B1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	65536959	65536959	C	T	X87_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	NA	NM_004820.3
OSCJM-PTD-578-T	9427	ECEL1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	233348851	233348851	C	T	E423K	Missense_Mutation	N	0.57	getma.org/?cm=var&var=hg19,2,233348851,C,T&fts=all	getma.org/pdb.php?prot=ECEL1_HUMAN&from=123&to=513&var=E423K	getma.org/?cm=msa&ty=f&p=ECEL1_HUMAN&rb=123&re=513&var=E423K	GRCh37	-1	SNP	novel	unknown	0	Gag/Aag	NM_004826.2
OSCJM-PT07-43-T	9442	MED27	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	134735974	134735974	C	T	W296*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,9,134735974,C,T&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	tGg/tAg	NM_004269.3
OSCJM-PT15-391-T	9443	MED7	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	156566230	156566230	C	G	Q71H	Missense_Mutation	N	-2.515	getma.org/?cm=var&var=hg19,5,156566230,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MED7_HUMAN&rb=6&re=165&var=Q71H	GRCh37	-1	SNP	novel	unknown	0	caG/caC	NM_004270.4
OSCJM-PT25-327-T	9447	AIM2	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT25-74-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	159043115	159043115	C	A	V59L	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,1,159043115,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=AIM2_HUMAN&rb=6&re=83&var=V59L	GRCh37	-1	SNP	novel	.	0	Gtg/Ttg	NM_004833.1
OSCJM-PT20-600-T	9453	GGPS1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	235505444	235505444	C	G	S87C	Missense_Mutation	M	2.365	getma.org/?cm=var&var=hg19,1,235505444,C,G&fts=all	getma.org/pdb.php?prot=GGPPS_HUMAN&from=12&to=265&var=S87C	getma.org/?cm=msa&ty=f&p=GGPPS_HUMAN&rb=12&re=265&var=S87C	GRCh37	1	SNP	novel	.	0	tCt/tGt	NA
OSCJM-PT46-394-T	9463	PICK1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	38455242	38455242	G	A	G15R	Missense_Mutation	M	2.645	getma.org/?cm=var&var=hg19,22,38455242,G,A&fts=all	getma.org/pdb.php?prot=PICK1_HUMAN&from=1&to=21&var=G15R	getma.org/?cm=msa&ty=f&p=PICK1_HUMAN&rb=1&re=51&var=G15R	GRCh37	1	SNP	novel	unknown	0	Gga/Aga	NM_012407.3
OSCJM-PT01-166-T	9467	SH3BP5	hgsc.bcm.edu	Cross	Somatic	G	C	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					3	15345716	15345716	G	C	S75C	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,3,15345716,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=3BP5_HUMAN&rb=37&re=273&var=S75C	GRCh37	-1	SNP	novel	unknown	0	tCt/tGt	NM_004844.4
OSCJM-PT10-325-T	9475	ROCK2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	11332359	11332359	G	A	R1360*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,11332359,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Cga/Tga	NM_004850.3
OSCJM-PT15-391-T	9475	ROCK2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	11337711	11337711	G	A	R1074C	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,2,11337711,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ROCK2_HUMAN&rb=1056&re=1124&var=R1074C	GRCh37	-1	SNP	novel	unknown	0	Cgt/Tgt	NM_004850.3
OSCJM-PT14-353-T	9481	SLC25A27	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	46623711	46623711	G	A	E80K	Missense_Mutation	N	-1.89	getma.org/?cm=var&var=hg19,6,46623711,G,A&fts=all	getma.org/pdb.php?prot=UCP4_HUMAN&from=17&to=120&var=E80K	getma.org/?cm=msa&ty=f&p=UCP4_HUMAN&rb=17&re=120&var=E80K	GRCh37	1	SNP	novel	unknown	0	Gaa/Aaa	NM_004277.4,NM_001204051.1
OSCJM-PT41-180-T	9486	CHST10	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	101010057	101010057	C	T	V241M	Missense_Mutation	M	2.24	getma.org/?cm=var&var=hg19,2,101010057,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CHSTA_HUMAN&rb=111&re=349&var=V241M	GRCh37	-1	SNP	novel	unknown	0	Gtg/Atg	NM_004854.4
OSCJM-PTD-578-T	9557	CHD1L	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	146739091	146739091	T	G	F301C	Missense_Mutation	M	2.23	getma.org/?cm=var&var=hg19,1,146739091,T,G&fts=all	getma.org/pdb.php?prot=CHD1L_HUMAN&from=49&to=328&var=F301C	getma.org/?cm=msa&ty=f&p=CHD1L_HUMAN&rb=49&re=328&var=F301C	GRCh37	1	SNP	NA	NA	0	tTt/tGt	NM_001256336.1,NM_024568.2,NM_004284.4
OSCJM-PT11-385-T	9578	CDC42BPB	hgsc.bcm.edu	Illumina	Somatic	-	TCA	OSCJM-PT11-517-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					14	103452874	103452875	NA	TCA	H213_I214ins*	Nonsense_Mutation	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	-1	INS	[Not Available]	[Not Available]	0	-/TGA	NM_006035.3
OSCJM-PTD-578-T	9590	AKAP12	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	151672243	151672243	T	C	I906T	Missense_Mutation	L	1.24	getma.org/?cm=var&var=hg19,6,151672243,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=AKA12_HUMAN&rb=829&re=1028&var=I906T	GRCh37	1	SNP	NA	NA	0.00002	aTt/aCt	NA
OSCJM-PT11-385-T	9590	AKAP12	hgsc.bcm.edu	SOLID	Somatic	-	GAG	OSCJM-PT11-517-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					6	151674116	151674117	-	GAG	E1531dup	In_Frame_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	rs3842128	unknown	0.7491	-/GAG	NA
OSCJM-PT13-258-T	9612	NCOR2	hgsc.bcm.edu	Illumina	Somatic	-	GCCGCTGCT	OSCJM-PT13-257-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					12	124824721	124824722	NA	GCCGCTGCT	S1837_G1839dup	In_Frame_Ins	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	-1	INS	rs143952466	bycluster;by1000genomes	0.9924	-/AGCAGCGGC	[Not Available]
OSCJM-PT14-353-T	9612	NCOR2	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	124832419	124832419	G	T	P1342T	Missense_Mutation	L	1.74	getma.org/?cm=var&var=hg19,12,124832419,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NCOR2_HUMAN&rb=1258&re=1457&var=P1350T	GRCh37	-1	SNP	novel	unknown	0	Ccc/Acc	NA
OSCJM-PT49-537-T	9617	MTRF1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	41808112	41808112	C	T	R301Q	Missense_Mutation	M	2.365	getma.org/?cm=var&var=hg19,13,41808112,C,T&fts=all	getma.org/pdb.php?prot=RF1M_HUMAN&from=286&to=399&var=R301Q	getma.org/?cm=msa&ty=f&p=RF1M_HUMAN&rb=286&re=399&var=R301Q	GRCh37	-1	SNP	novel	unknown	0.00003	cGa/cAa	NA
OSCJM-PT03-388-T	9618	TRAF4	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	27076524	27076524	C	T	R448*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,27076524,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_004295.3
OSCJM-PT05-91-T	9645	MICAL2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	12229576	12229576	G	A	R160H	Missense_Mutation	M	3.265	getma.org/?cm=var&var=hg19,11,12229576,G,A&fts=all	getma.org/pdb.php?prot=MICA2_HUMAN&from=144&to=343&var=R160H	getma.org/?cm=msa&ty=f&p=MICA2_HUMAN&rb=144&re=343&var=R160H	GRCh37	1	SNP	novel	unknown	0	cGc/cAc	NM_014632.2,NM_001282663.1
OSCJM-PT10-325-T	9658	ZNF516	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					18	74090958	74090958	G	-	V1038Sfs*122	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.9998	ccC/cc	NM_014643.3
OSCJM-PTB-347-T	9658	ZNF516	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					18	74090958	74090958	G	-	V1038Sfs*122	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.9998	ccC/cc	NM_014643.3
OSCJM-PT12-478-T	9658	ZNF516	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					18	74090958	74090958	G	-	V1038Sfs*122	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.9998	ccC/cc	NM_014643.3
OSCJM-PT48-530-T	9658	ZNF516	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					18	74090958	74090958	G	-	V1038Sfs*122	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.9998	ccC/cc	NM_014643.3
OSCJM-PT49-537-T	9658	ZNF516	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					18	74090958	74090958	G	-	V1038Sfs*122	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	NA	NA	0.9998	ccC/cc	NM_014643.3
OSCJM-PT01-166-T	9659	PDE4DIP	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	145075775	145075775	G	A	P30S	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,1,145075775,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=A7YY83_HUMAN&rb=1&re=140&var=P30S	GRCh37	-1	SNP	novel	unknown	0.076	Cct/Tct	NA
OSCJM-PT37-513-T	9671	WSCD2	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	108589800	108589800	T	C	L64P	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,12,108589800,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=WSCD2_HUMAN&rb=1&re=124&var=L64P	GRCh37	1	SNP	novel	.	0	cTg/cCg	NA
OSCJM-PT20-600-T	9678	PHF14	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT20-506-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	11022230	11022230	A	G	K115R	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,7,11022230,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PHF14_HUMAN&rb=1&re=200&var=K115R	GRCh37	1	SNP	rs218966	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.6524	aAg/aGg	NM_014660.3
OSCJM-PT46-394-T	9678	PHF14	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	11101625	11101625	C	T	S856F	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,7,11101625,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PHF14_HUMAN&rb=780&re=888&var=S856F	GRCh37	1	SNP	novel	unknown	0	tCt/tTt	NM_014660.3
OSCJM-PT46-394-T	9681	DEPDC5	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	32233080	32233080	G	T	G765C	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,22,32233080,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DEPD5_HUMAN&rb=583&re=782&var=G756C	GRCh37	1	SNP	novel	unknown	0	Ggc/Tgc	NA
OSCJM-PT13-258-T	9696	CROCC	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	17265560	17265560	C	T	P511S	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,1,17265560,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CROCC_HUMAN&rb=351&re=549&var=P511S	GRCh37	1	SNP	rs78191062	unknown	0.3896	Ccc/Tcc	NM_014675.3
OSCJM-PT45-364-T	9701	PPP6R2	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT45-246-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	50845191	50845191	A	T	S101C	Missense_Mutation	M	2.14	getma.org/?cm=var&var=hg19,22,50845191,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PP6R2_HUMAN&rb=1&re=127&var=S101C	GRCh37	1	SNP	novel	unknown	0	Agc/Tgc	NA
OSCJM-PT48-530-T	9701	PPP6R2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	50860756	50860756	G	A	G307S	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,22,50860756,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PP6R2_HUMAN&rb=128&re=364&var=G307S	GRCh37	1	SNP	novel	unknown	0	Ggc/Agc	NA
OSCJM-PT49-537-T	9701	PPP6R2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	50862018	50862018	G	A	R367Q	Missense_Mutation	L	1.765	getma.org/?cm=var&var=hg19,22,50862018,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PP6R2_HUMAN&rb=358&re=532&var=R367Q	GRCh37	1	SNP	novel	unknown	0.00002	cGg/cAg	NA
OSCJM-PT33-288-T	9703	KIAA0100	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	26968976	26968976	C	A	E233*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,26968976,C,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	.	0	Gag/Tag	NM_014680.3
OSCJM-PTB-347-T	9704	DHX34	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	47884510	47884510	C	T	A1076V	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,19,47884510,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DHX34_HUMAN&rb=912&re=1111&var=A1076V	GRCh37	1	SNP	NA	NA	0.00004	gCg/gTg	NM_014681.5
OSCJM-PT07-43-T	9704	DHX34	hgsc.bcm.edu	Cross	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					19	47856424	47856424	A	G	E46G	Missense_Mutation	L	1.245	getma.org/?cm=var&var=hg19,19,47856424,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=DHX34_HUMAN&rb=1&re=164&var=E46G	GRCh37	1	SNP	NA	NA	0	gAa/gGa	NM_014681.5
OSCJM-PT47-449-T	9708	PCDHGA8	hgsc.bcm.edu	Illumina	Somatic	AGGG	-	OSCJM-PT47-225-N	AGGG	AGGG	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					5	140772984	140772987	AGGG	-	E203Kfs*27	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0	AGGGag/ag	NM_032088.1
OSCJM-PT45-364-T	9716	AQR	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT45-246-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	35159776	35159776	T	A	N1268I	Missense_Mutation	H	4.085	getma.org/?cm=var&var=hg19,15,35159776,T,A&fts=all	getma.org/pdb.php?prot=AQR_HUMAN&from=1115&to=1308&var=N1268I	getma.org/?cm=msa&ty=f&p=AQR_HUMAN&rb=1115&re=1308&var=N1268I	GRCh37	-1	SNP	novel	unknown	0	aAt/aTt	NM_014691.2
OSCJM-PT13-258-T	9721	GPRIN2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	47000217	47000217	G	A	R446H	Missense_Mutation	L	1.555	getma.org/?cm=var&var=hg19,10,47000217,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GRIN2_HUMAN&rb=111&re=456&var=R446H	GRCh37	1	SNP	"1000g2010nov_all_0.067,1	NA	0.1047	cGc/cAc	NA
OSCJM-PT01-166-T	9721	GPRIN2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	46998999	46998999	G	A	R40H	Missense_Mutation	L	1.155	getma.org/?cm=var&var=hg19,10,46998999,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GRIN2_HUMAN&rb=1&re=109&var=R40H	GRCh37	1	SNP	rs3127818	by2Hit2Allele	0.5027	cGc/cAc	NA
OSCJM-PT30-592-T	9721	GPRIN2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT30-587-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	46999596	46999596	G	A	R239K	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,10,46999596,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GRIN2_HUMAN&rb=111&re=456&var=R239K	GRCh37	1	SNP	rs7895979	byCluster	0.4832	aGg/aAg	NA
OSCJM-PTD-578-T	9721	GPRIN2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	46999604	46999604	A	G	R242G	Missense_Mutation	N	-1.7	getma.org/?cm=var&var=hg19,10,46999604,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=GRIN2_HUMAN&rb=111&re=456&var=R242G	GRCh37	1	SNP	rs3127683	byCluster	0.8866	Agg/Ggg	NA
OSCJM-PT04-447-T	9722	NOS1AP	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT04-206-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	162124256	162124256	G	A	R56H	Missense_Mutation	M	2.3	getma.org/?cm=var&var=hg19,1,162124256,G,A&fts=all	getma.org/pdb.php?prot=CAPON_HUMAN&from=32&to=175&var=R56H	getma.org/?cm=msa&ty=f&p=CAPON_HUMAN&rb=32&re=175&var=R56H	GRCh37	1	SNP	NA	NA	0	cGc/cAc	NM_014697.2,NM_001164757.1
OSCJM-PT14-353-T	9734	HDAC9	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	18706024	18706024	G	C	E549D	Missense_Mutation	L	1.745	getma.org/?cm=var&var=hg19,7,18706024,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=HDAC9_HUMAN&rb=525&re=642&var=E549D	GRCh37	1	SNP	novel	unknown	0	gaG/gaC	NM_058176.2
OSCJM-PTD-578-T	9735	KNTC1	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	123078827	123078827	C	G	S1417C	Missense_Mutation	L	1.895	getma.org/?cm=var&var=hg19,12,123078827,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=KNTC1_HUMAN&rb=1401&re=1578&var=S1417C	GRCh37	1	SNP	NA	NA	0.00004	tCt/tGt	NM_014708.4
OSCJM-PT05-91-T	9735	KNTC1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	123095417	123095417	G	A	M1864I	Missense_Mutation	L	1.6	getma.org/?cm=var&var=hg19,12,123095417,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=KNTC1_HUMAN&rb=1579&re=2130&var=M1864I	GRCh37	1	SNP	novel	unknown	0	atG/atA	NM_014708.4
OSCJM-PT45-364-T	9735	KNTC1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT45-246-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	123072387	123072387	T	C	V1287A	Missense_Mutation	N	0.46	getma.org/?cm=var&var=hg19,12,123072387,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=KNTC1_HUMAN&rb=1201&re=1400&var=V1287A	GRCh37	1	SNP	novel	unknown	0	gTg/gCg	NM_014708.4
OSCJM-PTD-578-T	9736	USP34	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	61415337	61415337	A	G	M3514T	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,2,61415337,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBP34_HUMAN&rb=3351&re=3546&var=M3514T	GRCh37	-1	SNP	NA	NA	0	aTg/aCg	NM_014709.3
OSCJM-PT46-394-T	9736	USP34	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	61524054	61524054	G	C	R1379G	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,2,61524054,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBP34_HUMAN&rb=1201&re=1400&var=R1379G	GRCh37	-1	SNP	novel	unknown	0	Cga/Gga	NM_014709.3
OSCJM-PT19-481-T	9738	CCP110	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT19-3-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	19548030	19548030	T	A	F347I	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,16,19548030,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CP110_HUMAN&rb=1&re=779&var=F347I	GRCh37	1	SNP	rs11645625	byCluster;byFrequency;byHapMap	0.0258	Ttt/Att	NM_001199022.1
OSCJM-PT11-385-T	9745	ZNF536	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT11-517-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	30936580	30936580	T	C	L704P	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,19,30936580,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZN536_HUMAN&rb=654&re=764&var=L704P	GRCh37	1	SNP	novel	unknown	0	cTc/cCc	NM_014717.1
OSCJM-PT20-600-T	9745	ZNF536	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	30936404	30936404	G	C	Q645H	Missense_Mutation	N	0.42	getma.org/?cm=var&var=hg19,19,30936404,G,C&fts=all	getma.org/pdb.php?prot=ZN536_HUMAN&from=631&to=653&var=Q645H	getma.org/?cm=msa&ty=f&p=ZN536_HUMAN&rb=611&re=673&var=Q645H	GRCh37	1	SNP	novel	.	0	caG/caC	NM_014717.1
OSCJM-PT05-91-T	9748	SLK	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	105752404	105752404	G	T	E122*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,10,105752404,G,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Gaa/Taa	NM_014720.2
OSCJM-PT13-258-T	9780	PIEZO1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	88789685	88789685	G	C	Q1463E	Missense_Mutation	N	0.755	getma.org/?cm=var&var=hg19,16,88789685,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=Q1463E	GRCh37	-1	SNP	novel	unknown	0.00007	Cag/Gag	NM_001142864.2
OSCJM-PT13-258-T	9780	PIEZO1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	88789687	88789687	C	T	R1462Q	Missense_Mutation	N	0.515	getma.org/?cm=var&var=hg19,16,88789687,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=R1462Q	GRCh37	-1	SNP	novel	unknown	0.0063	cGg/cAg	NM_001142864.2
OSCJM-PT50-575-T	9780	PIEZO1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	88798203	88798203	C	T	R1036H	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,16,88798203,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PIEZ1_HUMAN&rb=58&re=1627&var=R1036H	GRCh37	-1	SNP	novel	unknown	0.0002	cGc/cAc	NM_001142864.2
OSCJM-PT46-394-T	9785	DHX38	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	72137986	72137986	G	A	E656K	Missense_Mutation	H	5.26	getma.org/?cm=var&var=hg19,16,72137986,G,A&fts=all	getma.org/pdb.php?prot=PRP16_HUMAN&from=535&to=694&var=E656K	getma.org/?cm=msa&ty=f&p=PRP16_HUMAN&rb=535&re=694&var=E656K	GRCh37	1	SNP	novel	unknown	0	Gag/Aag	NM_014003.3
OSCJM-PT37-513-T	9788	MTSS1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	125575185	125575185	G	C	H291Q	Missense_Mutation	L	1.185	getma.org/?cm=var&var=hg19,8,125575185,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTSS1_HUMAN&rb=238&re=437&var=H291Q	GRCh37	-1	SNP	novel	.	0	caC/caG	NM_014751.4
OSCJM-PT22-229-T	9815	GIT2	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT22-321-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	110399159	110399159	T	C	H304R	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,12,110399159,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=GIT2_HUMAN&rb=297&re=329&var=H304R	GRCh37	-1	SNP	novel	.	0	cAc/cGc	NM_057169.3
OSCJM-PT03-388-T	9819	TSC22D2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	150127347	150127347	G	C	E70D	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,3,150127347,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=T22D2_HUMAN&rb=1&re=228&var=E70D	GRCh37	1	SNP	novel	unknown	0	gaG/gaC	NM_014779.2
OSCJM-PT07-43-T	9821	RB1CC1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	53573780	53573780	G	A	R474C	Missense_Mutation	M	2.295	getma.org/?cm=var&var=hg19,8,53573780,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RBCC1_HUMAN&rb=1&re=612&var=R474C	GRCh37	-1	SNP	NA	NA	0.00006	Cgc/Tgc	NM_014781.4
OSCJM-PT50-575-T	9828	ARHGEF17	hgsc.bcm.edu	Illumina	Somatic	-	CTC	OSCJM-PT50-81-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					11	73020375	73020376	NA	CTC	S235dup	In_Frame_Ins	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	NA	INS	novel	[Not Available]	0.2204	tgc/tgCTCc	NM_014786.3
OSCJM-PT15-391-T	9833	MELK	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT15-284-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	36597217	36597217	A	T	X136_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_014791.3
OSCJM-PT15-391-T	9833	MELK	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	36643018	36643018	G	A	V287I	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,9,36643018,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MELK_HUMAN&rb=264&re=341&var=V287I	GRCh37	1	SNP	NA	NA	0.0005	Gta/Ata	NM_014791.3
OSCJM-PTD-578-T	9843	HEPH	hgsc.bcm.edu	Cross	Somatic	A	T	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					X	65392280	65392280	A	T	D84V	Missense_Mutation	L	1.82	getma.org/?cm=var&var=hg19,X,65392280,A,T&fts=all	getma.org/pdb.php?prot=HEPH_HUMAN&from=80&to=209&var=D84V	getma.org/?cm=msa&ty=f&p=HEPH_HUMAN&rb=80&re=209&var=D84V	GRCh37	1	SNP	NA	NA	0	gAc/gTc	NA
OSCJM-PT40-169-T	9843	HEPH	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT40-108-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	65476116	65476116	A	G	D947G	Missense_Mutation	L	1.2	getma.org/?cm=var&var=hg19,X,65476116,A,G&fts=all	getma.org/pdb.php?prot=HEPH_HUMAN&from=942&to=1065&var=D947G	getma.org/?cm=msa&ty=f&p=HEPH_HUMAN&rb=942&re=1065&var=D947G	GRCh37	1	SNP	NA	NA	0	gAt/gGt	NA
OSCJM-PT07-43-T	9844	ELMO1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	37264524	37264524	G	A	Q221*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,7,37264524,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_014800.10,NM_001206480.1
OSCJM-PT01-166-T	9853	RUSC2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT01-583-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	35558474	35558474	T	C	V1084A	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,9,35558474,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RUSC2_HUMAN&rb=1039&re=1174&var=V1084A	GRCh37	1	SNP	novel	unknown	0	gTc/gCc	NM_014806.2
OSCJM-PT10-325-T	9855	FARP2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	242430942	242430942	G	A	E879K	Missense_Mutation	L	1.71	getma.org/?cm=var&var=hg19,2,242430942,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=FARP2_HUMAN&rb=853&re=929&var=E879K	GRCh37	1	SNP	NA	NA	0.00001	Gag/Aag	NM_014808.2
OSCJM-PT40-169-T	9857	CEP350	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	179983098	179983098	C	G	L504V	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,1,179983098,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CE350_HUMAN&rb=401&re=600&var=L504V	GRCh37	1	SNP	NA	NA	0	Cta/Gta	NM_014810.4
OSCJM-PT45-364-T	9859	CEP170	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT45-246-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	243336099	243336099	T	C	E539G	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,1,243336099,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CE170_HUMAN&rb=491&re=690&var=E539G	GRCh37	-1	SNP	novel	unknown	0	gAa/gGa	NM_014812.2
OSCJM-PT46-394-T	9860	LRIG2	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	113655168	113655168	A	T	E622D	Missense_Mutation	L	0.925	getma.org/?cm=var&var=hg19,1,113655168,A,T&fts=all	getma.org/pdb.php?prot=LRIG2_HUMAN&from=602&to=692&var=E622D	getma.org/?cm=msa&ty=f&p=LRIG2_HUMAN&rb=602&re=692&var=E622D	GRCh37	1	SNP	novel	unknown	0	gaA/gaT	NM_014813.1
OSCJM-PT41-180-T	9863	MAGI2	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	77649246	77649246	G	T	P1252T	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,7,77649246,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MAGI2_HUMAN&rb=1227&re=1426&var=P1252T	GRCh37	-1	SNP	novel	unknown	0	Ccg/Acg	NM_012301.3
OSCJM-PT05-91-T	9867	PJA2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	108672987	108672987	G	C	S691C	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,5,108672987,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PJA2_HUMAN&rb=678&re=708&var=S691C	GRCh37	-1	SNP	novel	unknown	0	tCt/tGt	NM_014819.4
OSCJM-PT43-201-T	9873	FCHSD2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	72712151	72712151	G	A	L91F	Missense_Mutation	M	2.485	getma.org/?cm=var&var=hg19,11,72712151,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=FCSD2_HUMAN&rb=12&re=108&var=L91F	GRCh37	-1	SNP	novel	unknown	0	Ctc/Ttc	NM_014824.2
OSCJM-PT48-530-T	9874	TLK1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT48-60-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	171853236	171853236	A	G	L684P	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,2,171853236,A,G&fts=all	getma.org/pdb.php?prot=TLK1_HUMAN&from=456&to=734&var=L684P	getma.org/?cm=msa&ty=f&p=TLK1_HUMAN&rb=456&re=734&var=L684P	GRCh37	-1	SNP	novel	unknown	0	cTt/cCt	NA
OSCJM-PTD-578-T	9877	ZC3H11A	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	203821425	203821425	A	G	I777M	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,1,203821425,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZC11A_HUMAN&rb=381&re=808&var=I777M	GRCh37	1	SNP	NA	NA	0	atA/atG	NA
OSCJM-PT15-391-T	9886	RHOBTB1	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT15-284-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	62648549	62648549	A	G	Y293H	Missense_Mutation	L	1.805	getma.org/?cm=var&var=hg19,10,62648549,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=RHBT1_HUMAN&rb=258&re=330&var=Y293H	GRCh37	-1	SNP	NA	NA	0	Tat/Cat	NM_001242359.1,NM_014836.4
OSCJM-PTA-367-T	9886	RHOBTB1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	62632017	62632017	C	T	C616Y	Missense_Mutation	M	2.955	getma.org/?cm=var&var=hg19,10,62632017,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RHBT1_HUMAN&rb=584&re=696&var=C616Y	GRCh37	-1	SNP	NA	NA	0	tGt/tAt	NM_001242359.1,NM_014836.4
OSCJM-PT05-91-T	9887	SMG7	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	183520952	183520952	G	C	X1101_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_173156.2
OSCJM-PT32-489-T	9887	SMG7	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	183518407	183518407	G	T	G936V	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,1,183518407,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMG7_HUMAN&rb=479&re=1135&var=G936V	GRCh37	1	SNP	NA	NA	0	gGa/gTa	NM_173156.2
OSCJM-PTD-578-T	9899	SV2B	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	91835756	91835756	G	C	E676Q	Missense_Mutation	M	2.16	getma.org/?cm=var&var=hg19,15,91835756,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SV2B_HUMAN&rb=517&re=681&var=E676Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NA
OSCJM-PT50-575-T	9910	RABGAP1L	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	174340138	174340138	G	C	S496T	Missense_Mutation	M	2.64	getma.org/?cm=var&var=hg19,1,174340138,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RBG1L_HUMAN&rb=423&re=540&var=S496T	GRCh37	1	SNP	novel	unknown	0	aGt/aCt	NM_014857.4
OSCJM-PT41-180-T	9912	ARHGAP44	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	12798261	12798261	G	C	E20Q	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,17,12798261,G,C&fts=all	getma.org/pdb.php?prot=RHG44_HUMAN&from=1&to=242&var=E20Q	getma.org/?cm=msa&ty=f&p=RHG44_HUMAN&rb=1&re=242&var=E20Q	GRCh37	1	SNP	novel	unknown	0	Gaa/Caa	NM_014859.4
OSCJM-PT46-394-T	9918	NCAPD2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	6639957	6639957	C	T	A1313V	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,12,6639957,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CND1_HUMAN&rb=1235&re=1401&var=A1313V	GRCh37	1	SNP	novel	unknown	0	gCg/gTg	NM_014865.3
OSCJM-PT10-325-T	9923	ZBTB40	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT10-70-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	22816482	22816482	T	C	L14P	Missense_Mutation	M	3.31	getma.org/?cm=var&var=hg19,1,22816482,T,C&fts=all	getma.org/pdb.php?prot=ZBT40_HUMAN&from=14&to=116&var=L14P	getma.org/?cm=msa&ty=f&p=ZBT40_HUMAN&rb=14&re=116&var=L14P	GRCh37	1	SNP	novel	unknown	0	cTg/cCg	NM_014870.3
OSCJM-PT07-43-T	9924	PAN2	hgsc.bcm.edu	Cross	Somatic	A	T	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					12	56720656	56720656	A	T	F336Y	Missense_Mutation	M	2.165	getma.org/?cm=var&var=hg19,12,56720656,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PAN2_HUMAN&rb=201&re=400&var=F336Y	GRCh37	-1	SNP	NA	NA	0	tTt/tAt	NM_001127460.2
OSCJM-PT22-229-T	9940	DLEC1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	38159367	38159367	G	A	R1519Q	Missense_Mutation	L	1.155	getma.org/?cm=var&var=hg19,3,38159367,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DLEC1_HUMAN&rb=1&re=1752&var=R1519Q	GRCh37	1	SNP	novel	.	0.00002	cGg/cAg	NA
OSCJM-PT49-537-T	9947	MAGEC1	hgsc.bcm.edu	Illumina	Somatic	CCC	-	OSCJM-PT49-585-N	CCC	CCC	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					X	140993904	140993906	CCC	-	P239del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0	agCCCc/agc	NM_005462.4
OSCJM-PT36-331-T	9947	MAGEC1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	140996454	140996454	G	C	L1088F	Missense_Mutation	L	1.775	getma.org/?cm=var&var=hg19,X,140996454,G,C&fts=all	getma.org/pdb.php?prot=MAGC1_HUMAN&from=908&to=1106&var=L1088F	getma.org/?cm=msa&ty=f&p=MAGC1_HUMAN&rb=908&re=1106&var=L1088F	GRCh37	1	SNP	novel	.	0	ttG/ttC	NM_005462.4
OSCJM-PTB-347-T	9947	MAGEC1	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	140993508	140993508	G	T	K106N	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,X,140993508,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MAGC1_HUMAN&rb=40&re=120&var=K106N	GRCh37	1	SNP	novel	.	0	aaG/aaT	NM_005462.4
OSCJM-PT36-331-T	9960	USP3	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	63866558	63866558	A	T	K351M	Missense_Mutation	M	3.085	getma.org/?cm=var&var=hg19,15,63866558,A,T&fts=all	getma.org/pdb.php?prot=UBP3_HUMAN&from=156&to=508&var=K351M	getma.org/?cm=msa&ty=f&p=UBP3_HUMAN&rb=156&re=508&var=K351M	GRCh37	1	SNP	novel	.	0	aAg/aTg	NM_006537.3
OSCJM-PT05-91-T	9968	MED12	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	70348967	70348967	G	A	C1160Y	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,X,70348967,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MED12_HUMAN&rb=1158&re=1357&var=C1160Y	GRCh37	1	SNP	novel	unknown	0	tGt/tAt	NA
OSCJM-PT19-481-T	9993	DGCR2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT19-3-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	19050762	19050762	G	A	T193I	Missense_Mutation	M	2.015	getma.org/?cm=var&var=hg19,22,19050762,G,A&fts=all	getma.org/pdb.php?prot=IDD_HUMAN&from=115&to=241&var=T193I	getma.org/?cm=msa&ty=f&p=IDD_HUMAN&rb=115&re=241&var=T193I	GRCh37	-1	SNP	novel	.	0	aCt/aTt	NM_001184781.1,NM_005137.2
OSCJM-PT01-166-T	9997	SCO2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					22	50962782	50962782	C	G	R20P	Missense_Mutation	N	-0.55	getma.org/?cm=var&var=hg19,22,50962782,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SCO2_HUMAN&rb=1&re=63&var=R20P	GRCh37	-1	SNP	rs140523	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	0.6419	cGg/cCg	NM_001169109.1
OSCJM-PT47-449-T	10003	NAALAD2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT47-225-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	89896711	89896711	C	T	P402S	Missense_Mutation	M	3.39	getma.org/?cm=var&var=hg19,11,89896711,C,T&fts=all	getma.org/pdb.php?prot=NALD2_HUMAN&from=360&to=554&var=P402S	getma.org/?cm=msa&ty=f&p=NALD2_HUMAN&rb=360&re=554&var=P402S	GRCh37	1	SNP	novel	unknown	0	Cct/Tct	NM_005467.3
OSCJM-PT01-166-T	10011	SRA1	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PT01-583-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					5	139931629	139931630	-	G	V110Rfs*26	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0.2585	-/C	NM_001035235.3
OSCJM-PTD-578-T	10013	HDAC6	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	48665100	48665100	A	T	M207L	Missense_Mutation	N	-0.25	getma.org/?cm=var&var=hg19,X,48665100,A,T&fts=all	getma.org/pdb.php?prot=HDAC6_HUMAN&from=92&to=403&var=M207L	getma.org/?cm=msa&ty=f&p=HDAC6_HUMAN&rb=92&re=403&var=M207L	GRCh37	1	SNP	NA	NA	0	Atg/Ttg	NA
OSCJM-PT14-353-T	10021	HCN4	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	73614998	73614998	G	A	P1146S	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,15,73614998,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=HCN4_HUMAN&rb=831&re=1202&var=P1146S	GRCh37	-1	SNP	novel	unknown	0	Ccc/Tcc	NM_005477.2
OSCJM-PT33-288-T	10051	SMC4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	160151556	160151556	G	A	A1276T	Missense_Mutation	N	-0.62	getma.org/?cm=var&var=hg19,3,160151556,G,A&fts=all	getma.org/pdb.php?prot=SMC4_HUMAN&from=1275&to=1288&var=A1276T	getma.org/?cm=msa&ty=f&p=SMC4_HUMAN&rb=1245&re=1288&var=A1276T	GRCh37	1	SNP	novel	.	0	Gct/Act	NM_005496.3
OSCJM-PT20-600-T	10059	DNM1L	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	32854351	32854351	C	T	S35S	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	.	0	agC/agT	NA
OSCJM-PT50-575-T	10068	IL18BP	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	71712885	71712885	G	C	S188T	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	aGc/aCc	NM_001145057.1
OSCJM-PT18-392-T	10075	HUWE1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	53641559	53641559	C	T	E733K	Missense_Mutation	L	1.265	getma.org/?cm=var&var=hg19,X,53641559,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=HUWE1_HUMAN&rb=429&re=815&var=E733K	GRCh37	-1	SNP	novel	.	0	Gag/Aag	NM_031407.5
OSCJM-PT43-201-T	10075	HUWE1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT43-326-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	53610684	53610684	A	G	L1785P	Missense_Mutation	M	2.265	getma.org/?cm=var&var=hg19,X,53610684,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=HUWE1_HUMAN&rb=1680&re=1879&var=L1785P	GRCh37	-1	SNP	novel	unknown	0	cTc/cCc	NM_031407.5
OSCJM-PT50-575-T	10075	HUWE1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT50-81-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	53562408	53562408	T	C	I4196V	Missense_Mutation	L	1.035	getma.org/?cm=var&var=hg19,X,53562408,T,C&fts=all	getma.org/pdb.php?prot=HUWE1_HUMAN&from=4067&to=4374&var=I4196V	getma.org/?cm=msa&ty=f&p=HUWE1_HUMAN&rb=4067&re=4374&var=I4196V	GRCh37	-1	SNP	novel	unknown	0	Atc/Gtc	NM_031407.5
OSCJM-PT04-447-T	10110	SGK2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT04-206-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	42208658	42208658	A	G	D359G	Missense_Mutation	M	1.985	getma.org/?cm=var&var=hg19,20,42208658,A,G&fts=all	getma.org/pdb.php?prot=SGK2_HUMAN&from=353&to=427&var=D359G	getma.org/?cm=msa&ty=f&p=SGK2_HUMAN&rb=353&re=427&var=D359G	GRCh37	1	SNP	NA	NA	0	gAc/gGc	NM_016276.3
OSCJM-PT50-575-T	10120	ACTR1B	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	98273653	98273653	G	T	I330I	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	atC/atA	NM_005735.3
OSCJM-PT20-600-T	10128	LRPPRC	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	44204178	44204178	C	T	R202K	Missense_Mutation	M	2.2	getma.org/?cm=var&var=hg19,2,44204178,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LPPRC_HUMAN&rb=198&re=228&var=R202K	GRCh37	-1	SNP	novel	.	0	aGa/aAa	NM_133259.3
OSCJM-PT33-288-T	10146	G3BP1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	151176879	151176879	C	T	Q211*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,5,151176879,C,T&fts=all	NA	NA	GRCh37	1	SNP	novel	.	0	Caa/Taa	NM_005754.2,NM_198395.1
OSCJM-PTD-578-T	10147	SUGP2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	19112448	19112448	G	A	R989W	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,19,19112448,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SUGP2_HUMAN&rb=839&re=1010&var=R989W	GRCh37	-1	SNP	NA	NA	0.00003	Cgg/Tgg	NM_014884.3
OSCJM-PT15-391-T	10149	ADGRG2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	19051759	19051759	G	C	I92M	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,X,19051759,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=GPR64_HUMAN&rb=1&re=200&var=I92M	GRCh37	-1	SNP	novel	unknown	0	atC/atG	NM_001079858.2,NM_005756.3
OSCJM-PT03-388-T	10157	AASS	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	121769560	121769560	T	A	E81V	Missense_Mutation	H	3.535	getma.org/?cm=var&var=hg19,7,121769560,T,A&fts=all	getma.org/pdb.php?prot=AASS_HUMAN&from=27&to=157&var=E81V	getma.org/?cm=msa&ty=f&p=AASS_HUMAN&rb=27&re=157&var=E81V	GRCh37	-1	SNP	NA	NA	0	gAg/gTg	NA
OSCJM-PT10-325-T	10172	ZNF256	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	58453905	58453905	G	A	P91S	Missense_Mutation	N	0.705	getma.org/?cm=var&var=hg19,19,58453905,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZN256_HUMAN&rb=71&re=133&var=P91S	GRCh37	-1	SNP	NA	NA	0	Ccc/Tcc	NM_005773.2
OSCJM-PT13-258-T	10180	RBM6	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	50107904	50107904	G	C	R1012T	Missense_Mutation	M	1.945	getma.org/?cm=var&var=hg19,3,50107904,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RBM6_HUMAN&rb=935&re=1050&var=R1012T	GRCh37	1	SNP	novel	unknown	0	aGa/aCa	NM_005777.2
OSCJM-PT46-394-T	10194	TSHZ1	hgsc.bcm.edu	Illumina	Somatic	AGA	-	OSCJM-PT46-220-N	AGA	AGA	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					18	72998273	72998275	AGA	-	K305del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0	cAGAag/cag	NA
OSCJM-PT10-325-T	10210	TOPORS	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	32543648	32543648	C	T	C292Y	Missense_Mutation	M	2.045	getma.org/?cm=var&var=hg19,9,32543648,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TOPRS_HUMAN&rb=155&re=386&var=C292Y	GRCh37	-1	SNP	NA	NA	0	tGc/tAc	NM_005802.4
OSCJM-PT45-364-T	10212	DDX39A	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT45-246-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	14523912	14523912	T	C	I41V	Missense_Mutation	L	1.61	getma.org/?cm=var&var=hg19,19,14523912,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DX39A_HUMAN&rb=1&re=67&var=I41V	GRCh37	-1	SNP	novel	unknown	0	Atc/Gtc	NM_005804.3
OSCJM-PT36-331-T	10216	PRG4	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	186266026	186266026	C	A	P7T	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,1,186266026,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PRG4_HUMAN&rb=1&re=55&var=P7T	GRCh37	1	SNP	novel	.	0	Ccc/Acc	NM_005807.3
OSCJM-PT42-193-T	10223	GPA33	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	167024220	167024220	C	A	A274S	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,1,167024220,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GPA33_HUMAN&rb=229&re=319&var=A274S	GRCh37	-1	SNP	novel	unknown	0	Gca/Tca	NM_005814.1
OSCJM-PT41-180-T	10225	CD96	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	111325618	111325618	G	A	A403T	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,111325618,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TACT_HUMAN&rb=360&re=522&var=A403T	GRCh37	1	SNP	novel	unknown	0	Gcc/Acc	NM_198196.2
OSCJM-PT03-388-T	10236	HNRNPR	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	23637344	23637344	C	G	R502T	Missense_Mutation	M	2.155	getma.org/?cm=var&var=hg19,1,23637344,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=HNRPR_HUMAN&rb=406&re=605&var=R502T	GRCh37	-1	SNP	NA	NA	0	aGa/aCa	NA
OSCJM-PT03-388-T	10236	HNRNPR	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					1	23637447	23637447	C	T	E468K	Missense_Mutation	M	2.28	getma.org/?cm=var&var=hg19,1,23637447,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=HNRPR_HUMAN&rb=406&re=605&var=E468K	GRCh37	-1	SNP	novel	unknown	0	Gaa/Aaa	NA
OSCJM-PT07-43-T	10249	GLYAT	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	58478154	58478154	G	A	L133F	Missense_Mutation	M	2.42	getma.org/?cm=var&var=hg19,11,58478154,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=GLYAT_HUMAN&rb=2&re=206&var=L133F	GRCh37	-1	SNP	NA	NA	0	Ctc/Ttc	NM_201648.2
OSCJM-PT50-575-T	10276	NET1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	5498614	5498614	C	T	A483V	Missense_Mutation	L	0.87	getma.org/?cm=var&var=hg19,10,5498614,C,T&fts=all	getma.org/pdb.php?prot=ARHG8_HUMAN&from=367&to=501&var=A483V	getma.org/?cm=msa&ty=f&p=ARHG8_HUMAN&rb=367&re=501&var=A483V	GRCh37	1	SNP	novel	unknown	0	gCc/gTc	NM_001047160.2
OSCJM-PTC-139-T	10278	EFS	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PTC-295-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	23830042	23830042	T	C	T7A	Missense_Mutation	N	0.675	getma.org/?cm=var&var=hg19,14,23830042,T,C&fts=all	getma.org/pdb.php?prot=EFS_HUMAN&from=5&to=68&var=T7A	getma.org/?cm=msa&ty=f&p=EFS_HUMAN&rb=5&re=68&var=T7A	GRCh37	-1	SNP	rs2231798	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.3355	Acc/Gcc	NM_005864.3
OSCJM-PT15-391-T	10293	TRAIP	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	49881982	49881982	G	A	S91F	Missense_Mutation	M	2.135	getma.org/?cm=var&var=hg19,3,49881982,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TRAIP_HUMAN&rb=81&re=468&var=S91F	GRCh37	-1	SNP	NA	NA	0	tCc/tTc	NM_005879.2
OSCJM-PT20-600-T	10317	B3GALT5	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					21	41032610	41032610	G	C	G42R	Missense_Mutation	N	0.665	getma.org/?cm=var&var=hg19,21,41032610,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=B3GT5_HUMAN&rb=1&re=70&var=G42R	GRCh37	1	SNP	NA	NA	0	Ggg/Cgg	NM_033171.2
OSCJM-PTA-367-T	10322	SMYD5	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	73447180	73447180	C	T	A69A	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	gcC/gcT	NM_006062.2
OSCJM-PT03-388-T	10331	B3GNT3	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	17918850	17918850	G	T	Q78H	Missense_Mutation	L	1.895	getma.org/?cm=var&var=hg19,19,17918850,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=B3GN3_HUMAN&rb=39&re=120&var=Q78H	GRCh37	1	SNP	NA	NA	0	caG/caT	NM_014256.3
OSCJM-PTB-347-T	10333	TLR6	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	38829053	38829053	C	A	G681V	Missense_Mutation	H	4.03	getma.org/?cm=var&var=hg19,4,38829053,C,A&fts=all	getma.org/pdb.php?prot=TLR6_HUMAN&from=644&to=780&var=G681V	getma.org/?cm=msa&ty=f&p=TLR6_HUMAN&rb=644&re=780&var=G681V	GRCh37	-1	SNP	novel	unknown	0	gGc/gTc	NA
OSCJM-PTB-347-T	10347	ABCA7	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PTB-173-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	1042809	1042809	A	G	E188G	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,19,1042809,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABCA7_HUMAN&rb=1&re=200&var=E188G	GRCh37	1	SNP	rs3764645	byCluster;byFrequency;byHapMap	0.4864	gAg/gGg	NM_019112.3
OSCJM-PT03-388-T	10350	ABCA9	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	66980249	66980249	C	G	E1483Q	Missense_Mutation	M	3.165	getma.org/?cm=var&var=hg19,17,66980249,C,G&fts=all	getma.org/pdb.php?prot=ABCA9_HUMAN&from=1288&to=1521&var=E1483Q	getma.org/?cm=msa&ty=f&p=ABCA9_HUMAN&rb=1288&re=1521&var=E1483Q	GRCh37	-1	SNP	NA	NA	0	Gag/Cag	NM_080283.3
OSCJM-PT42-193-T	10396	ATP8A1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	42487663	42487663	C	T	R725H	Missense_Mutation	N	0.285	getma.org/?cm=var&var=hg19,4,42487663,C,T&fts=all	getma.org/pdb.php?prot=AT8A1_HUMAN&from=406&to=810&var=R725H	getma.org/?cm=msa&ty=f&p=AT8A1_HUMAN&rb=406&re=810&var=R725H	GRCh37	-1	SNP	novel	unknown	0.00004	cGt/cAt	NM_006095.2
OSCJM-PT32-489-T	10399	RACK1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	180666087	180666087	G	A	L206F	Missense_Mutation	N	0.335	getma.org/?cm=var&var=hg19,5,180666087,G,A&fts=all	getma.org/pdb.php?prot=GBLP_HUMAN&from=182&to=220&var=L206F	getma.org/?cm=msa&ty=f&p=GBLP_HUMAN&rb=182&re=220&var=L206F	GRCh37	-1	SNP	NA	NA	0	Ctc/Ttc	NM_006098.4
OSCJM-PT37-513-T	10420	TESK2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	45811108	45811108	G	A	R374C	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,1,45811108,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TESK2_HUMAN&rb=365&re=428&var=R374C	GRCh37	-1	SNP	novel	.	0.00006	Cgt/Tgt	NM_007170.2
OSCJM-PTB-347-T	10420	TESK2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	45923442	45923442	G	A	R6W	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,1,45923442,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TESK2_HUMAN&rb=1&re=58&var=R6W	GRCh37	-1	SNP	novel	unknown	0.00002	Cgg/Tgg	NM_007170.2
OSCJM-PT03-388-T	10428	CFDP1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	75446548	75446548	T	A	Q96L	Missense_Mutation	L	1.6	getma.org/?cm=var&var=hg19,16,75446548,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CFDP1_HUMAN&rb=1&re=200&var=Q96L	GRCh37	-1	SNP	NA	NA	0	cAg/cTg	NM_006324.2
OSCJM-PT32-489-T	10443	N4BP2L2	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	33111164	33111164	T	A	M1?	Translation_Start_Site	NA	0	getma.org/?cm=var&var=hg19,13,33111164,T,A&fts=all	NA	http://getma.org/?cm=msa&ty=f&p=N42L2_HUMAN&rb=1&re=391&var=M1L	GRCh37	-1	SNP	NA	NA	0	Atg/Ttg	NM_014887.2
OSCJM-PT10-325-T	10501	SEMA6B	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	4555530	4555530	C	T	R173H	Missense_Mutation	M	3.35	getma.org/?cm=var&var=hg19,19,4555530,C,T&fts=all	getma.org/pdb.php?prot=SEM6B_HUMAN&from=65&to=485&var=R173H	getma.org/?cm=msa&ty=f&p=SEM6B_HUMAN&rb=65&re=485&var=R173H	GRCh37	-1	SNP	NA	NA	0	cGc/cAc	NM_032108.3
OSCJM-PT40-169-T	10512	SEMA3C	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT40-108-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	80435066	80435066	G	A	L183F	Missense_Mutation	M	3.005	getma.org/?cm=var&var=hg19,7,80435066,G,A&fts=all	getma.org/pdb.php?prot=SEM3C_HUMAN&from=54&to=495&var=L183F	getma.org/?cm=msa&ty=f&p=SEM3C_HUMAN&rb=54&re=495&var=L183F	GRCh37	-1	SNP	NA	NA	0	Ctt/Ttt	NM_006379.3
OSCJM-PT20-600-T	10529	NEBL	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	21074756	21074756	C	T	D989N	Missense_Mutation	L	1.605	getma.org/?cm=var&var=hg19,10,21074756,C,T&fts=all	getma.org/pdb.php?prot=NEBL_HUMAN&from=960&to=1007&var=D989N	getma.org/?cm=msa&ty=f&p=NEBL_HUMAN&rb=960&re=1007&var=D989N	GRCh37	-1	SNP	NA	NA	0	Gat/Aat	NM_006393.2
OSCJM-PTD-578-T	10549	PRDX4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	23700515	23700515	G	A	G201D	Missense_Mutation	H	4.605	getma.org/?cm=var&var=hg19,X,23700515,G,A&fts=all	getma.org/pdb.php?prot=PRDX4_HUMAN&from=81&to=214&var=G201D	getma.org/?cm=msa&ty=f&p=PRDX4_HUMAN&rb=81&re=214&var=G201D	GRCh37	1	SNP	NA	NA	0	gGt/gAt	NM_006406.1
OSCJM-PT42-193-T	10573	MRPL28	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	419091	419091	C	T	G140R	Missense_Mutation	H	3.555	getma.org/?cm=var&var=hg19,16,419091,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RM28_HUMAN&rb=1&re=200&var=G140R	GRCh37	-1	SNP	novel	NA	0.00008	Ggg/Agg	NM_006428.4
OSCJM-PT43-201-T	10580	SORBS1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	97194454	97194454	C	T	A33T	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,10,97194454,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SRBS1_HUMAN&rb=1&re=200&var=A33T	GRCh37	-1	SNP	NA	NA	0.00003	Gca/Aca	NM_001034954.1
OSCJM-PT10-325-T	10585	POMT1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	134387438	134387438	G	A	G355S	Missense_Mutation	M	3.26	getma.org/?cm=var&var=hg19,9,134387438,G,A&fts=all	getma.org/pdb.php?prot=POMT1_HUMAN&from=340&to=515&var=G355S	getma.org/?cm=msa&ty=f&p=POMT1_HUMAN&rb=340&re=515&var=G355S	GRCh37	1	SNP	NA	NA	0	Ggc/Agc	NM_007171.3
OSCJM-PT47-449-T	10629	TAF6L	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT47-225-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	62549606	62549606	C	G	L210V	Missense_Mutation	M	2.365	getma.org/?cm=var&var=hg19,11,62549606,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TAF6L_HUMAN&rb=74&re=241&var=L210V	GRCh37	1	SNP	novel	unknown	0	Ctg/Gtg	NM_006473.3
OSCJM-PT12-478-T	10686	CLDN16	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	190106134	190106134	C	A	Q76K	Missense_Mutation	M	2.07	getma.org/?cm=var&var=hg19,3,190106134,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CLD16_HUMAN&rb=72&re=253&var=Q76K	GRCh37	1	SNP	novel	unknown	0	Caa/Aaa	NM_006580.3
OSCJM-PT45-364-T	10699	CORIN	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	47682236	47682236	C	T	D352N	Missense_Mutation	N	-0.35	getma.org/?cm=var&var=hg19,4,47682236,C,T&fts=all	getma.org/pdb.php?prot=CORIN_HUMAN&from=341&to=377&var=D352N	getma.org/?cm=msa&ty=f&p=CORIN_HUMAN&rb=341&re=377&var=D352N	GRCh37	-1	SNP	NA	NA	0	Gac/Aac	NM_006587.3
OSCJM-PT11-385-T	10721	POLQ	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	121207697	121207697	G	A	Q1361*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,3,121207697,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Cag/Tag	NM_199420.3
OSCJM-PT37-513-T	10721	POLQ	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	121202313	121202313	T	C	I1964V	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,3,121202313,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=DPOLQ_HUMAN&rb=1886&re=2085&var=I1964V	GRCh37	-1	SNP	novel	.	0	Atc/Gtc	NM_199420.3
OSCJM-PTA-367-T	10749	KIF1C	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTA-308-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	4925441	4925441	T	C	W689R	Missense_Mutation	L	1.32	getma.org/?cm=var&var=hg19,17,4925441,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=KIF1C_HUMAN&rb=634&re=1101&var=W689R	GRCh37	1	SNP	novel	unknown	0.00001	Tgg/Cgg	NM_006612.5
OSCJM-PT43-201-T	10752	CHL1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	391095	391095	G	A	R285K	Missense_Mutation	L	1.735	getma.org/?cm=var&var=hg19,3,391095,G,A&fts=all	getma.org/pdb.php?prot=CHL1_HUMAN&from=241&to=327&var=R285K	getma.org/?cm=msa&ty=f&p=CHL1_HUMAN&rb=241&re=327&var=R285K	GRCh37	1	SNP	NA	NA	0	aGa/aAa	NA
OSCJM-PT42-193-T	10752	CHL1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	423918	423918	C	T	R629W	Missense_Mutation	M	2.715	getma.org/?cm=var&var=hg19,3,423918,C,T&fts=all	getma.org/pdb.php?prot=CHL1_HUMAN&from=613&to=698&var=R629W	getma.org/?cm=msa&ty=f&p=CHL1_HUMAN&rb=613&re=698&var=R629W	GRCh37	1	SNP	novel	unknown	0	Cgg/Tgg	NA
OSCJM-PT46-394-T	10761	PLAC1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	133700648	133700648	C	T	G22E	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,X,133700648,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLAC1_HUMAN&rb=1&re=130&var=G22E	GRCh37	-1	SNP	novel	unknown	0	gGa/gAa	NM_021796.3
OSCJM-PT11-385-T	10771	ZMYND11	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	294963	294963	G	C	E541Q	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,10,294963,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZMY11_HUMAN&rb=304&re=503&var=E501Q	GRCh37	1	SNP	NA	NA	0	Gaa/Caa	NA
OSCJM-PT05-91-T	10797	MTHFD2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	74435815	74435815	C	T	P177S	Missense_Mutation	M	3.27	getma.org/?cm=var&var=hg19,2,74435815,C,T&fts=all	getma.org/pdb.php?prot=MTDC_HUMAN&from=158&to=332&var=P177S	getma.org/?cm=msa&ty=f&p=MTDC_HUMAN&rb=158&re=332&var=P177S	GRCh37	1	SNP	novel	unknown	0	Cca/Tca	NM_006636.3
OSCJM-PT36-331-T	10804	GJB6	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	20796988	20796988	C	A	C211F	Missense_Mutation	N	0.415	getma.org/?cm=var&var=hg19,13,20796988,C,A&fts=all	getma.org/pdb.php?prot=CXB6_HUMAN&from=146&to=213&var=C211F	getma.org/?cm=msa&ty=f&p=CXB6_HUMAN&rb=146&re=213&var=C211F	GRCh37	-1	SNP	novel	.	0	tGc/tTc	NM_006783.4
OSCJM-PT15-391-T	10864	SLC22A7	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	43270151	43270151	C	T	S425S	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	rs2270860	by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop	0.4554	tcC/tcT	NM_153320.2
OSCJM-PTD-578-T	10869	USP19	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	49155121	49155121	G	C	F147L	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,3,49155121,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBP19_HUMAN&rb=117&re=191&var=F147L	GRCh37	-1	SNP	NA	NA	0	ttC/ttG	NM_006677.2
OSCJM-PT07-43-T	10884	MRPS30	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	44809405	44809405	T	C	F114S	Missense_Mutation	M	2.045	getma.org/?cm=var&var=hg19,5,44809405,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RT30_HUMAN&rb=1&re=429&var=F114S	GRCh37	1	SNP	novel	unknown	0	tTc/tCc	NM_016640.3
OSCJM-PTC-139-T	10885	WDR3	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PTC-295-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	118488747	118488747	A	T	Y456F	Missense_Mutation	M	2.6	getma.org/?cm=var&var=hg19,1,118488747,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=WDR3_HUMAN&rb=443&re=485&var=Y456F	GRCh37	1	SNP	NA	NA	0	tAt/tTt	NM_006784.2
OSCJM-PT46-394-T	10890	RAB10	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	26332656	26332656	C	T	R70*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,26332656,C,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Cga/Tga	NM_016131.4
OSCJM-PT21-238-T	10901	DHRS4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT21-231-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	24423007	24423007	G	A	A4T	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,14,24423007,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DHRS4_HUMAN&rb=1&re=37&var=A4T	GRCh37	1	SNP	rs17099455	byCluster;byFrequency;byHapMap	0.087	Gcg/Acg	NM_021004.2
OSCJM-PT48-530-T	10908	PNPLA6	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	7601101	7601101	G	A	R95Q	Missense_Mutation	N	-0.425	getma.org/?cm=var&var=hg19,19,7601101,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLPL6_HUMAN&rb=1&re=200&var=R86Q	GRCh37	1	SNP	novel	unknown	0.00001	cGg/cAg	NM_001166111.1
OSCJM-PT32-489-T	10936	GPR75	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	54080317	54080317	T	C	E526G	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	NA	NA	0.00002	gAa/gGa	NM_006794.3
OSCJM-PT05-91-T	10973	ASCC3	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT05-46-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	101296331	101296331	T	G	K165T	Missense_Mutation	L	1.67	getma.org/?cm=var&var=hg19,6,101296331,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ASCC3_HUMAN&rb=1&re=200&var=K165T	GRCh37	-1	SNP	novel	unknown	0	aAa/aCa	NM_006828.2
OSCJM-PT41-180-T	10973	ASCC3	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	101049777	101049777	C	G	E1738Q	Missense_Mutation	H	4.615	getma.org/?cm=var&var=hg19,6,101049777,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ASCC3_HUMAN&rb=1544&re=1739&var=E1738Q	GRCh37	-1	SNP	novel	unknown	0	Gag/Cag	NM_006828.2
OSCJM-PT50-575-T	10973	ASCC3	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	101086524	101086524	C	G	A1359P	Missense_Mutation	H	4.36	getma.org/?cm=var&var=hg19,6,101086524,C,G&fts=all	getma.org/pdb.php?prot=ASCC3_HUMAN&from=1336&to=1511&var=A1359P	getma.org/?cm=msa&ty=f&p=ASCC3_HUMAN&rb=1336&re=1511&var=A1359P	GRCh37	-1	SNP	novel	unknown	0	Gct/Cct	NM_006828.2
OSCJM-PT46-394-T	11000	SLC27A3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	153751361	153751361	G	A	R596K	Missense_Mutation	M	3.19	getma.org/?cm=var&var=hg19,1,153751361,G,A&fts=all	getma.org/pdb.php?prot=S27A3_HUMAN&from=204&to=622&var=R596K	getma.org/?cm=msa&ty=f&p=S27A3_HUMAN&rb=204&re=622&var=R596K	GRCh37	1	SNP	novel	unknown	0	aGg/aAg	NM_024330.1
OSCJM-PT46-394-T	11001	SLC27A2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	50497490	50497490	G	A	C301Y	Missense_Mutation	H	3.695	getma.org/?cm=var&var=hg19,15,50497490,G,A&fts=all	getma.org/pdb.php?prot=S27A2_HUMAN&from=80&to=512&var=C301Y	getma.org/?cm=msa&ty=f&p=S27A2_HUMAN&rb=80&re=512&var=C301Y	GRCh37	1	SNP	novel	unknown	0	tGc/tAc	NM_003645.3
OSCJM-PTB-347-T	11069	RAPGEF4	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	173830337	173830337	C	A	T249K	Missense_Mutation	N	-0.05	getma.org/?cm=var&var=hg19,2,173830337,C,A&fts=all	getma.org/pdb.php?prot=RPGF4_HUMAN&from=219&to=289&var=T249K	getma.org/?cm=msa&ty=f&p=RPGF4_HUMAN&rb=219&re=289&var=T249K	GRCh37	1	SNP	novel	unknown	0	aCa/aAa	NM_007023.3
OSCJM-PT18-392-T	11073	TOPBP1	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT18-570-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	133341988	133341988	T	C	N1042S	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,3,133341988,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TOPB1_HUMAN&rb=979&re=1178&var=N1042S	GRCh37	-1	SNP	rs10935070	byCluster;byFrequency;byHapMap	0.2895	aAt/aGt	NM_007027.3
OSCJM-PT49-537-T	11078	TRIOBP	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					22	38119213	38119213	G	A	S217N	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,22,38119213,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TARA_HUMAN&rb=1&re=219&var=S217N	GRCh37	1	SNP	rs12628603	by2Hit2Allele;byCluster	0.5679	aGc/aAc	NM_001039141.2
OSCJM-PT07-43-T	11086	ADAM29	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	175897355	175897355	G	T	V227F	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,4,175897355,G,T&fts=all	getma.org/pdb.php?prot=ADA29_HUMAN&from=198&to=389&var=V227F	getma.org/?cm=msa&ty=f&p=ADA29_HUMAN&rb=198&re=389&var=V227F	GRCh37	1	SNP	NA	NA	0	Gtt/Ttt	NM_014269.4,NM_001278126.1,NM_001278125.1
OSCJM-PT45-364-T	11086	ADAM29	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT45-246-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	175898586	175898586	A	T	N637I	Missense_Mutation	H	3.725	getma.org/?cm=var&var=hg19,4,175898586,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ADA29_HUMAN&rb=625&re=654&var=N637I	GRCh37	1	SNP	novel	unknown	0	aAc/aTc	NM_014269.4,NM_001278126.1,NM_001278125.1
OSCJM-PT15-391-T	11099	PTPN21	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	89016608	89016608	C	T	V52M	Missense_Mutation	M	3.15	getma.org/?cm=var&var=hg19,14,89016608,C,T&fts=all	getma.org/pdb.php?prot=PTN21_HUMAN&from=27&to=105&var=V52M	getma.org/?cm=msa&ty=f&p=PTN21_HUMAN&rb=27&re=105&var=V52M	GRCh37	-1	SNP	novel	unknown	0	Gtg/Atg	NA
OSCJM-PT40-169-T	11113	CIT	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	120168392	120168392	C	A	E1090*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,12,120168392,C,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Gag/Tag	NM_007174.2
OSCJM-PTC-139-T	11119	BTN3A1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTC-295-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	26413650	26413650	G	A	M424I	Missense_Mutation	N	0.145	getma.org/?cm=var&var=hg19,6,26413650,G,A&fts=all	getma.org/pdb.php?prot=BT3A1_HUMAN&from=392&to=511&var=M424I	getma.org/?cm=msa&ty=f&p=BT3A1_HUMAN&rb=392&re=511&var=M424I	GRCh37	1	SNP	NA	NA	0	atG/atA	NM_001145009.1,NM_007048.5,NM_001145008.1
OSCJM-PT05-91-T	11135	CDC42EP1	hgsc.bcm.edu	Illumina	Somatic	CAGCGCCTGCTGCAAACCCCT	-	OSCJM-PT05-46-N	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	37964409	37964429	CAGCGCCTGCTGCAAACCCCT	-	N258_A264del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	rs66468174;rs77417880;rs6	by1000genomes;by1000genomes;by1000genomes	0.462	cCAGCGCCTGCTGCAAACCCCTca/cca	NM_152243.2
OSCJM-PT01-166-T	11135	CDC42EP1	hgsc.bcm.edu	Illumina	Somatic	CAGCGCCTGCTGCAAACCCCT	-	OSCJM-PT01-583-N	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	37964409	37964429	CAGCGCCTGCTGCAAACCCCT	-	N258_A264del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	rs66468174;rs77417880;rs6	by1000genomes;by1000genomes;by1000genomes	0.462	cCAGCGCCTGCTGCAAACCCCTca/cca	NM_152243.2
OSCJM-PTB-347-T	11135	CDC42EP1	hgsc.bcm.edu	Illumina	Somatic	CAGCGCCTGCTGCAAACCCCT	-	OSCJM-PTB-173-N	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	37964409	37964429	CAGCGCCTGCTGCAAACCCCT	-	N258_A264del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	rs66468174;rs77417880;rs6	by1000genomes;by1000genomes;by1000genomes	0.462	cCAGCGCCTGCTGCAAACCCCTca/cca	NM_152243.2
OSCJM-PT11-385-T	11135	CDC42EP1	hgsc.bcm.edu	Illumina	Somatic	CAGCGCCTGCTGCAAACCCCT	-	OSCJM-PT11-517-N	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					22	37964409	37964429	CAGCGCCTGCTGCAAACCCCT	-	N258_A264del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	rs66468174;rs77417880;rs6	by1000genomes;by1000genomes;by1000genomes	0.462	cCAGCGCCTGCTGCAAACCCCTca/cca	NM_152243.2
OSCJM-PT48-530-T	11185	INMT	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	30795280	30795280	C	T	P202L	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,7,30795280,C,T&fts=all	getma.org/pdb.php?prot=INMT_HUMAN&from=1&to=259&var=P202L	getma.org/?cm=msa&ty=f&p=INMT_HUMAN&rb=1&re=259&var=P202L	GRCh37	1	SNP	rs147878270	byFrequency	0.0004	cCg/cTg	NM_006774.4,NM_001199219.1
OSCJM-PT33-288-T	11200	CHEK2	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT33-571-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	29120970	29120970	T	A	N196I	Missense_Mutation	L	1.645	getma.org/?cm=var&var=hg19,22,29120970,T,A&fts=all	getma.org/pdb.php?prot=CHK2_HUMAN&from=193&to=219&var=N196I	getma.org/?cm=msa&ty=f&p=CHK2_HUMAN&rb=163&re=249&var=N196I	GRCh37	-1	SNP	novel	.	0	aAt/aTt	NM_007194.3
OSCJM-PT13-258-T	11201	POLI	hgsc.bcm.edu	Illumina	Somatic	CGA	-	OSCJM-PT13-257-N	CGA	CGA	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					18	51795958	51795960	CGA	-	D17del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	null	0.769	ggCGAc/ggc	NM_007195.2
OSCJM-PT48-530-T	11201	POLI	hgsc.bcm.edu	Illumina	Somatic	CGA	-	OSCJM-PT48-60-N	CGA	CGA	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					18	51795958	51795960	CGA	-	D17del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	null	0.769	ggCGAc/ggc	NM_007195.2
OSCJM-PT20-600-T	11202	KLK8	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	51503788	51503788	G	A	P41L	Missense_Mutation	L	1.185	getma.org/?cm=var&var=hg19,19,51503788,G,A&fts=all	getma.org/pdb.php?prot=KLK8_HUMAN&from=33&to=252&var=P41L	getma.org/?cm=msa&ty=f&p=KLK8_HUMAN&rb=33&re=252&var=P41L	GRCh37	-1	SNP	NA	NA	0	cCc/cTc	NA
OSCJM-PT45-364-T	11202	KLK8	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	51503260	51503260	C	A	S162I	Missense_Mutation	M	1.905	getma.org/?cm=var&var=hg19,19,51503260,C,A&fts=all	getma.org/pdb.php?prot=KLK8_HUMAN&from=33&to=252&var=S162I	getma.org/?cm=msa&ty=f&p=KLK8_HUMAN&rb=33&re=252&var=S162I	GRCh37	-1	SNP	novel	unknown	0	aGt/aTt	NA
OSCJM-PTD-578-T	11213	IRAK3	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					12	66639014	66639014	G	A	R429Q	Missense_Mutation	L	1.185	getma.org/?cm=var&var=hg19,12,66639014,G,A&fts=all	getma.org/pdb.php?prot=IRAK3_HUMAN&from=165&to=443&var=R429Q	getma.org/?cm=msa&ty=f&p=IRAK3_HUMAN&rb=165&re=443&var=R429Q	GRCh37	1	SNP	rs140671957	NA	0.0002	cGg/cAg	NM_007199.2
OSCJM-PT28-298-T	11236	RNF139	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT28-437-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	125499212	125499212	A	G	Y441C	Missense_Mutation	M	2.44	getma.org/?cm=var&var=hg19,8,125499212,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=RN139_HUMAN&rb=18&re=516&var=Y441C	GRCh37	1	SNP	novel	.	0	tAt/tGt	NM_007218.3
OSCJM-PT43-201-T	11244	ZHX1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	124266742	124266742	C	T	S482N	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	aGc/aAc	NA
OSCJM-PT25-327-T	11245	GPR176	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT25-74-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	40093965	40093965	C	G	V306L	Missense_Mutation	N	-0.69	getma.org/?cm=var&var=hg19,15,40093965,C,G&fts=all	getma.org/pdb.php?prot=GP176_HUMAN&from=58&to=320&var=V306L	getma.org/?cm=msa&ty=f&p=GP176_HUMAN&rb=58&re=320&var=V306L	GRCh37	-1	SNP	novel	.	0	Gtt/Ctt	NM_007223.2
OSCJM-PT03-388-T	11253	MAN1B1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	140001753	140001753	G	A	G540S	Missense_Mutation	M	2.165	getma.org/?cm=var&var=hg19,9,140001753,G,A&fts=all	getma.org/pdb.php?prot=MA1B1_HUMAN&from=256&to=695&var=G540S	getma.org/?cm=msa&ty=f&p=MA1B1_HUMAN&rb=256&re=695&var=G540S	GRCh37	1	SNP	novel	unknown	0.00009	Ggc/Agc	NM_016219.4
OSCJM-PT30-592-T	11259	FILIP1L	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT30-587-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	99568208	99568208	A	G	L771S	Missense_Mutation	L	1.65	getma.org/?cm=var&var=hg19,3,99568208,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=FIL1L_HUMAN&rb=650&re=849&var=L771S	GRCh37	-1	SNP	novel	.	0	tTa/tCa	NM_182909.2
OSCJM-PT20-600-T	11273	ATXN2L	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	28843559	28843559	C	G	S452C	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,16,28843559,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATX2L_HUMAN&rb=334&re=533&var=S452C	GRCh37	1	SNP	novel	.	0	tCt/tGt	NM_007245.3
OSCJM-PT35-37-T	11274	USP18	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT35-339-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					22	18655999	18655999	A	G	N325S	Missense_Mutation	L	1.005	getma.org/?cm=var&var=hg19,22,18655999,A,G&fts=all	getma.org/pdb.php?prot=UBP18_HUMAN&from=52&to=367&var=N325S	getma.org/?cm=msa&ty=f&p=UBP18_HUMAN&rb=52&re=367&var=N325S	GRCh37	1	SNP	rs61731585	bycluster;byfrequency	0.0055	aAt/aGt	NM_017414.3
OSCJM-PT41-180-T	11279	KLF8	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	56291999	56291999	C	G	I156M	Missense_Mutation	M	2.215	getma.org/?cm=var&var=hg19,X,56291999,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=KLF8_HUMAN&rb=52&re=198&var=I156M	GRCh37	1	SNP	novel	unknown	0	atC/atG	NM_007250.4
OSCJM-PT05-91-T	11280	SCN11A	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					3	38988316	38988316	G	A	S117L	Missense_Mutation	L	0.83	getma.org/?cm=var&var=hg19,3,38988316,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SCNBA_HUMAN&rb=1&re=160&var=S117L	GRCh37	-1	SNP	NA	NA	0	tCa/tTa	NM_014139.2,NM_001287223.1
OSCJM-PT18-392-T	11280	SCN11A	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	38888466	38888466	C	T	G1699S	Missense_Mutation	L	1.64	getma.org/?cm=var&var=hg19,3,38888466,C,T&fts=all	getma.org/pdb.php?prot=SCNBA_HUMAN&from=1604&to=1791&var=G1699S	getma.org/?cm=msa&ty=f&p=SCNBA_HUMAN&rb=1604&re=1791&var=G1699S	GRCh37	-1	SNP	novel	.	0	Ggc/Agc	NM_014139.2,NM_001287223.1
OSCJM-PT36-331-T	11281	POU6F2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	39472802	39472802	G	A	A385T	Missense_Mutation	M	2.08	getma.org/?cm=var&var=hg19,7,39472802,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PO6F2_HUMAN&rb=201&re=400&var=A385T	GRCh37	1	SNP	NA	NA	0	Gcc/Acc	NM_001166018.1,NM_007252.3
OSCJM-PT27-562-T	11317	RBPJL	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT27-497-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					20	43942676	43942676	T	C	A253A	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	rs2076026	byCluster;byFrequency;byHapMap	0.0937	gcT/gcC	NM_001281449.1,NM_014276.3,NM_001281448.1
OSCJM-PT11-385-T	11329	STK38	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	36485513	36485513	G	C	I165M	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,6,36485513,G,C&fts=all	getma.org/pdb.php?prot=STK38_HUMAN&from=89&to=382&var=I165M	getma.org/?cm=msa&ty=f&p=STK38_HUMAN&rb=89&re=382&var=I165M	GRCh37	-1	SNP	NA	NA	0	atC/atG	NM_007271.2
OSCJM-PT20-600-T	22801	ITGA11	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	68624345	68624345	C	T	R541Q	Missense_Mutation	M	2.69	getma.org/?cm=var&var=hg19,15,68624345,C,T&fts=all	getma.org/pdb.php?prot=ITA11_HUMAN&from=519&to=541&var=R541Q	getma.org/?cm=msa&ty=f&p=ITA11_HUMAN&rb=489&re=571&var=R541Q	GRCh37	-1	SNP	novel	.	0.00003	cGa/cAa	NM_001004439.1
OSCJM-PT32-489-T	22838	RNF44	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	175956543	175956543	G	A	H373Y	Missense_Mutation	L	1.795	getma.org/?cm=var&var=hg19,5,175956543,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RNF44_HUMAN&rb=320&re=377&var=H373Y	GRCh37	-1	SNP	NA	NA	0	Cat/Tat	NM_014901.4
OSCJM-PT20-600-T	22850	ADNP2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT20-506-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	77895125	77895125	A	G	N610S	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,18,77895125,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ADNP2_HUMAN&rb=601&re=800&var=N610S	GRCh37	1	SNP	novel	.	0	aAt/aGt	NM_014913.3
OSCJM-PT37-513-T	22859	ADGRL1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	14266201	14266201	G	C	I1093M	Missense_Mutation	M	3.075	getma.org/?cm=var&var=hg19,19,14266201,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=LPHN1_HUMAN&rb=857&re=1093&var=I1093M	GRCh37	-1	SNP	novel	.	0	atC/atG	NM_001008701.2
OSCJM-PT33-288-T	22866	CNKSR2	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	21670520	21670520	C	A	L996I	Missense_Mutation	M	2.095	getma.org/?cm=var&var=hg19,X,21670520,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNKR2_HUMAN&rb=870&re=1034&var=L996I	GRCh37	1	SNP	novel	.	0	Ctt/Att	NM_014927.3
OSCJM-PT07-43-T	22869	ZNF510	hgsc.bcm.edu	Cross	Somatic	G	C	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					9	99522150	99522150	G	C	S321*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,9,99522150,G,C&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tCa/tGa	NM_014930.1
OSCJM-PT01-166-T	22874	PLEKHA6	hgsc.bcm.edu	Cross	Somatic	G	C	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					1	204210594	204210594	G	C	P773R	Missense_Mutation	M	2.255	getma.org/?cm=var&var=hg19,1,204210594,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PKHA6_HUMAN&rb=759&re=958&var=P773R	GRCh37	-1	SNP	NA	NA	0	cCt/cGt	NM_014935.4
OSCJM-PT25-327-T	22890	ZBTB1	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT25-74-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	64988325	64988325	T	C	F35L	Missense_Mutation	M	1.96	getma.org/?cm=var&var=hg19,14,64988325,T,C&fts=all	getma.org/pdb.php?prot=ZBTB1_HUMAN&from=14&to=120&var=F35L	getma.org/?cm=msa&ty=f&p=ZBTB1_HUMAN&rb=14&re=120&var=F35L	GRCh37	1	SNP	novel	.	0	Ttt/Ctt	NA
OSCJM-PT45-364-T	22904	SBNO2	hgsc.bcm.edu	Illumina	Somatic	CTTTGGC	-	OSCJM-PT45-246-N	CTTTGGC	CTTTGGC	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					19	1114395	1114401	CTTTGGC	-	A636Pfs*77	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	GCCAAAGcc/cc	NM_014963.2
OSCJM-PT13-258-T	22913	RALY	hgsc.bcm.edu	Illumina	Somatic	-	CAG	OSCJM-PT13-257-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					20	32664864	32664865	NA	CAG	A230_G231insS	In_Frame_Ins	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	NA	INS	[Not Available]	[Not Available]	0.7305	gcc/gcCAGc	NM_016732.2
OSCJM-PT32-489-T	22930	RAB3GAP1	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	135851202	135851202	A	T	M101L	Missense_Mutation	L	1.245	getma.org/?cm=var&var=hg19,2,135851202,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RB3GP_HUMAN&rb=1&re=200&var=M101L	GRCh37	1	SNP	NA	NA	0	Atg/Ttg	NM_012233.2
OSCJM-PT50-575-T	22949	PTGR1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT50-81-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	114325489	114325489	T	C	Y301C	Missense_Mutation	L	1.15	getma.org/?cm=var&var=hg19,9,114325489,T,C&fts=all	getma.org/pdb.php?prot=PTGR1_HUMAN&from=291&to=329&var=Y301C	getma.org/?cm=msa&ty=f&p=PTGR1_HUMAN&rb=291&re=329&var=Y301C	GRCh37	-1	SNP	novel	unknown	0	tAt/tGt	NM_012212.3
OSCJM-PT41-180-T	22989	MYH15	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	108174696	108174696	G	C	L737V	Missense_Mutation	H	3.62	getma.org/?cm=var&var=hg19,3,108174696,G,C&fts=all	getma.org/pdb.php?prot=MYH15_HUMAN&from=105&to=778&var=L737V	getma.org/?cm=msa&ty=f&p=MYH15_HUMAN&rb=105&re=778&var=L737V	GRCh37	-1	SNP	novel	unknown	0	Ctg/Gtg	NM_014981.1
OSCJM-PT15-391-T	22990	PCNX1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	71445344	71445344	G	C	E764Q	Missense_Mutation	N	0.295	getma.org/?cm=var&var=hg19,14,71445344,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCX1_HUMAN&rb=601&re=800&var=E764Q	GRCh37	1	SNP	novel	unknown	0	Gag/Cag	NM_014982.2
OSCJM-PT20-600-T	22990	PCNX1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	71455335	71455335	T	A	F788Y	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,14,71455335,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCX1_HUMAN&rb=601&re=800&var=F788Y	GRCh37	1	SNP	novel	.	0	tTt/tAt	NM_014982.2
OSCJM-PT07-43-T	22993	HMGXB3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	149425164	149425164	G	A	A956T	Missense_Mutation	M	2.135	getma.org/?cm=var&var=hg19,5,149425164,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=HMGX3_HUMAN&rb=472&re=1536&var=A1202T	GRCh37	1	SNP	novel	unknown	0	Gcc/Acc	NM_014983.2
OSCJM-PT05-91-T	22999	RIMS1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	73000434	73000434	G	T	D1203Y	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,6,73000434,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RIMS1_HUMAN&rb=1051&re=1250&var=D1203Y	GRCh37	1	SNP	novel	unknown	0	Gat/Tat	NM_014989.5
OSCJM-PT07-43-T	23005	MAPKBP1	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	42110413	42110413	A	T	I674F	Missense_Mutation	N	0.625	getma.org/?cm=var&var=hg19,15,42110413,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MABP1_HUMAN&rb=596&re=692&var=I674F	GRCh37	1	SNP	NA	NA	0	Atc/Ttc	NM_001128608.1
OSCJM-PT32-489-T	23013	SPEN	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	16254612	16254612	A	G	Y626C	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,1,16254612,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MINT_HUMAN&rb=601&re=719&var=Y626C	GRCh37	1	SNP	novel	by Submitter	0	tAt/tGt	NM_015001.2
OSCJM-PT20-600-T	23013	SPEN	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	16254910	16254910	T	G	S725R	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,1,16254910,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MINT_HUMAN&rb=721&re=779&var=S725R	GRCh37	1	SNP	novel	.	0	agT/agG	NM_015001.2
OSCJM-PT41-180-T	23022	PALLD	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	169845530	169845530	G	C	K1061N	Missense_Mutation	L	1.76	getma.org/?cm=var&var=hg19,4,169845530,G,C&fts=all	getma.org/pdb.php?prot=PALLD_HUMAN&from=1234&to=1325&var=K1268N	getma.org/?cm=msa&ty=f&p=PALLD_HUMAN&rb=1234&re=1325&var=K1268N	GRCh37	1	SNP	novel	unknown	0	aaG/aaC	NA
OSCJM-PT32-489-T	23026	MYO16	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	109475526	109475526	T	A	W311R	Missense_Mutation	M	2.24	getma.org/?cm=var&var=hg19,13,109475526,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYO16_HUMAN&rb=286&re=402&var=W311R	GRCh37	1	SNP	NA	NA	0	Tgg/Agg	NM_015011.1
OSCJM-PT33-288-T	23026	MYO16	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT33-571-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	109379867	109379867	T	A	F126Y	Missense_Mutation	N	-0.125	getma.org/?cm=var&var=hg19,13,109379867,T,A&fts=all	getma.org/pdb.php?prot=MYO16_HUMAN&from=64&to=188&var=F126Y	getma.org/?cm=msa&ty=f&p=MYO16_HUMAN&rb=64&re=188&var=F126Y	GRCh37	1	SNP	novel	.	0	tTc/tAc	NM_015011.1
OSCJM-PT50-575-T	23029	RBM34	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	235323929	235323929	C	G	E88Q	Missense_Mutation	M	2.095	getma.org/?cm=var&var=hg19,1,235323929,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=RBM34_HUMAN&rb=1&re=186&var=E88Q	GRCh37	-1	SNP	novel	unknown	0	Gaa/Caa	NA
OSCJM-PT37-513-T	23039	XPO7	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	21857108	21857108	T	A	M902K	Missense_Mutation	M	2.595	getma.org/?cm=var&var=hg19,8,21857108,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=XPO7_HUMAN&rb=897&re=1087&var=M902K	GRCh37	1	SNP	novel	.	0	aTg/aAg	NM_015024.4
OSCJM-PT14-353-T	23051	ZHX3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	39832290	39832290	C	T	G423R	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,20,39832290,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZHX3_HUMAN&rb=360&re=496&var=G423R	GRCh37	-1	SNP	novel	unknown	0	Ggg/Agg	NA
OSCJM-PT07-43-T	23061	TBC1D9B	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	179326206	179326206	C	T	V111I	Missense_Mutation	M	2.765	getma.org/?cm=var&var=hg19,5,179326206,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBC9B_HUMAN&rb=1&re=141&var=V111I	GRCh37	-1	SNP	novel	unknown	0.00001	Gtc/Atc	NM_198868.2
OSCJM-PT20-600-T	23061	TBC1D9B	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	179294804	179294804	T	C	Y946C	Missense_Mutation	M	2.455	getma.org/?cm=var&var=hg19,5,179294804,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBC9B_HUMAN&rb=916&re=1115&var=Y946C	GRCh37	-1	SNP	novel	.	0	tAt/tGt	NM_198868.2
OSCJM-PT20-600-T	23062	GGA2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	23497418	23497418	C	T	R239Q	Missense_Mutation	N	-0.46	getma.org/?cm=var&var=hg19,16,23497418,C,T&fts=all	getma.org/pdb.php?prot=GGA2_HUMAN&from=223&to=324&var=R239Q	getma.org/?cm=msa&ty=f&p=GGA2_HUMAN&rb=223&re=324&var=R239Q	GRCh37	-1	SNP	novel	.	0.00001	cGa/cAa	NM_015044.4
OSCJM-PT03-388-T	23070	CMTR1	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	37441292	37441292	C	A	S579Y	Missense_Mutation	L	1.245	getma.org/?cm=var&var=hg19,6,37441292,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTR1_HUMAN&rb=450&re=649&var=S579Y	GRCh37	1	SNP	NA	NA	0	tCt/tAt	NM_015050.2
OSCJM-PT32-489-T	23077	MYCBP2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					13	77632376	77632376	G	A	L4398F	Missense_Mutation	M	2.315	getma.org/?cm=var&var=hg19,13,77632376,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYCB2_HUMAN&rb=4388&re=4443&var=L4398F	GRCh37	-1	SNP	NA	NA	0	Ctc/Ttc	NA
OSCJM-PT03-388-T	23090	ZNF423	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	49671961	49671961	T	C	S368G	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,16,49671961,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZN423_HUMAN&rb=287&re=408&var=S368G	GRCh37	-1	SNP	novel	unknown	0	Agc/Ggc	NA
OSCJM-PT40-169-T	23096	IQSEC2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	53265676	53265676	C	A	S1093S	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	tcG/tcT	NM_001111125.2
OSCJM-PT32-489-T	23101	MCF2L2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	182897459	182897459	C	T	D1043N	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,3,182897459,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MF2L2_HUMAN&rb=991&re=1059&var=D1043N	GRCh37	-1	SNP	NA	NA	0	Gac/Aac	NM_015078.2
OSCJM-PT03-388-T	23116	TOGARAM1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	45514042	45514042	G	A	A1375T	Missense_Mutation	L	1.67	getma.org/?cm=var&var=hg19,14,45514042,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=F179B_HUMAN&rb=1227&re=1426&var=A1375T	GRCh37	1	SNP	NA	NA	0	Gca/Aca	NM_015091.2
OSCJM-PT46-394-T	23129	PLXND1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	129286547	129286547	G	A	R1323C	Missense_Mutation	M	2.045	getma.org/?cm=var&var=hg19,3,129286547,G,A&fts=all	getma.org/pdb.php?prot=PLXD1_HUMAN&from=1152&to=1343&var=R1323C	getma.org/?cm=msa&ty=f&p=PLXD1_HUMAN&rb=1152&re=1343&var=R1323C	GRCh37	-1	SNP	NA	NA	0	Cgc/Tgc	NM_015103.2
OSCJM-PT15-391-T	23130	ATG2A	hgsc.bcm.edu	Cross	Somatic	A	C	OSCJM-PT15-284-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					11	64665780	64665780	A	C	C1576G	Missense_Mutation	M	1.93	getma.org/?cm=var&var=hg19,11,64665780,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATG2A_HUMAN&rb=1532&re=1731&var=C1576G	GRCh37	-1	SNP	novel	unknown	0	Tgc/Ggc	NM_015104.2
OSCJM-PT18-392-T	23137	SMC5	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	72897368	72897368	G	C	E284Q	Missense_Mutation	L	1.555	getma.org/?cm=var&var=hg19,9,72897368,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMC5_HUMAN&rb=52&re=1071&var=E284Q	GRCh37	1	SNP	novel	.	0	Gaa/Caa	NM_015110.3
OSCJM-PTD-578-T	23165	NUP205	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	135279436	135279436	G	C	E658Q	Missense_Mutation	M	2.35	getma.org/?cm=var&var=hg19,7,135279436,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=NU205_HUMAN&rb=13&re=1730&var=E658Q	GRCh37	1	SNP	NA	NA	0	Gaa/Caa	NM_015135.2
OSCJM-PT50-575-T	23165	NUP205	hgsc.bcm.edu	Illumina	Somatic	-	T	OSCJM-PT50-81-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					7	135298912	135298913	-	T	Y1068Lfs*8	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	unknown	0	-/T	NM_015135.2
OSCJM-PT10-325-T	23166	STAB1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	52540765	52540765	G	A	A630T	Missense_Mutation	N	-0.51	getma.org/?cm=var&var=hg19,3,52540765,G,A&fts=all	getma.org/pdb.php?prot=STAB1_HUMAN&from=517&to=643&var=A630T	getma.org/?cm=msa&ty=f&p=STAB1_HUMAN&rb=517&re=643&var=A630T	GRCh37	1	SNP	NA	NA	0.00001	Gcc/Acc	NM_015136.2
OSCJM-PT07-43-T	23166	STAB1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	52553341	52553341	G	A	G1699D	Missense_Mutation	H	3.72	getma.org/?cm=var&var=hg19,3,52553341,G,A&fts=all	getma.org/pdb.php?prot=STAB1_HUMAN&from=1596&to=1710&var=G1699D	getma.org/?cm=msa&ty=f&p=STAB1_HUMAN&rb=1596&re=1710&var=G1699D	GRCh37	1	SNP	NA	NA	0	gGc/gAc	NM_015136.2
OSCJM-PT04-447-T	23174	ZCCHC14	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT04-206-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	87445930	87445930	T	G	Q662H	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,16,87445930,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZCH14_HUMAN&rb=360&re=786&var=Q662H	GRCh37	-1	SNP	NA	NA	0	caA/caC	NM_015144.2
OSCJM-PT43-201-T	23175	LPIN1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	11913822	11913822	C	T	Q225*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,11913822,C,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Cag/Tag	NM_145693.2
OSCJM-PT46-394-T	23180	RFTN1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	16419226	16419226	C	A	G275G	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	ggG/ggT	NM_015150.1
OSCJM-PT03-388-T	23181	DIP2A	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					21	47974565	47974565	C	G	Q1078E	Missense_Mutation	M	1.905	getma.org/?cm=var&var=hg19,21,47974565,C,G&fts=all	getma.org/pdb.php?prot=DIP2A_HUMAN&from=1018&to=1490&var=Q1078E	getma.org/?cm=msa&ty=f&p=DIP2A_HUMAN&rb=1018&re=1490&var=Q1078E	GRCh37	1	SNP	novel	unknown	0	Cag/Gag	NA
OSCJM-PT40-169-T	23195	MDN1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT40-108-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	90497660	90497660	G	A	P416L	Missense_Mutation	M	3.29	getma.org/?cm=var&var=hg19,6,90497660,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MDN1_HUMAN&rb=324&re=458&var=P416L	GRCh37	-1	SNP	NA	NA	0	cCt/cTt	NA
OSCJM-PT22-229-T	23195	MDN1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	90388464	90388464	C	T	G4089D	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,6,90388464,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MDN1_HUMAN&rb=3215&re=4787&var=G4089D	GRCh37	-1	SNP	novel	.	0	gGt/gAt	NA
OSCJM-PT37-513-T	23195	MDN1	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	90418306	90418306	C	A	A2603S	Missense_Mutation	N	0.46	getma.org/?cm=var&var=hg19,6,90418306,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MDN1_HUMAN&rb=2473&re=2672&var=A2603S	GRCh37	-1	SNP	novel	.	0	Gct/Tct	NA
OSCJM-PT36-331-T	23216	TBC1D1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT36-126-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	38097594	38097594	G	C	E761Q	Missense_Mutation	L	1.295	getma.org/?cm=var&var=hg19,4,38097594,G,C&fts=all	getma.org/pdb.php?prot=TBCD1_HUMAN&from=746&to=802&var=E761Q	getma.org/?cm=msa&ty=f&p=TBCD1_HUMAN&rb=746&re=802&var=E761Q	GRCh37	1	SNP	novel	.	0	Gaa/Caa	NM_015173.3,NM_001253914.1,NM_001253915.1
OSCJM-PT40-169-T	23224	SYNE2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	64496627	64496627	C	G	N2243K	Missense_Mutation	N	-0.895	getma.org/?cm=var&var=hg19,14,64496627,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SYNE2_HUMAN&rb=2206&re=2326&var=N2243K	GRCh37	1	SNP	NA	NA	0	aaC/aaG	NM_015180.4
OSCJM-PT32-489-T	23228	PLCL2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	17052859	17052859	G	A	R548K	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	aGg/aAg	NM_001144382.1
OSCJM-PT14-353-T	23229	ARHGEF9	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT14-504-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	62875598	62875598	A	C	I359S	Missense_Mutation	L	1.64	getma.org/?cm=var&var=hg19,X,62875598,A,C&fts=all	getma.org/pdb.php?prot=ARHG9_HUMAN&from=325&to=425&var=I359S	getma.org/?cm=msa&ty=f&p=ARHG9_HUMAN&rb=325&re=425&var=I359S	GRCh37	-1	SNP	novel	.	0	aTc/aGc	NM_015185.2
OSCJM-PT01-166-T	23230	VPS13A	hgsc.bcm.edu	Illumina	Somatic	-	T	OSCJM-PT01-583-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					9	79930243	79930244	-	T	V1497Cfs*3	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	NA	NA	0	tgt/tgTt	NM_033305.2
OSCJM-PT01-166-T	23230	VPS13A	hgsc.bcm.edu	Cross	Somatic	G	T	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					9	79930245	79930245	G	T	V1497L	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,9,79930245,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=VP13A_HUMAN&rb=1372&re=1571&var=V1497L	GRCh37	1	SNP	novel	unknown	0	Gtg/Ttg	NM_033305.2
OSCJM-PT20-600-T	23231	SEL1L3	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	25759361	25759361	C	A	W1045C	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,4,25759361,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SE1L3_HUMAN&rb=984&re=1132&var=W1045C	GRCh37	-1	SNP	novel	.	0	tgG/tgT	NM_015187.3
OSCJM-PT49-537-T	23231	SEL1L3	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	25849284	25849284	C	A	R122I	Missense_Mutation	L	1.67	getma.org/?cm=var&var=hg19,4,25849284,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SE1L3_HUMAN&rb=1&re=200&var=R122I	GRCh37	-1	SNP	novel	unknown	0	aGa/aTa	NM_015187.3
OSCJM-PTA-367-T	23240	TMEM131L	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	154542878	154542878	G	C	E1245Q	Missense_Mutation	L	1.65	getma.org/?cm=var&var=hg19,4,154542878,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=T131L_HUMAN&rb=1162&re=1361&var=E1245Q	GRCh37	1	SNP	NA	NA	0	Gag/Cag	NM_015196.3
OSCJM-PT42-193-T	23244	PDS5A	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT42-279-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	39929612	39929612	T	C	E104G	Missense_Mutation	M	2.42	getma.org/?cm=var&var=hg19,4,39929612,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PDS5A_HUMAN&rb=1&re=1167&var=E104G	GRCh37	-1	SNP	novel	unknown	0	gAa/gGa	NM_001100399.1
OSCJM-PT36-331-T	23245	ASTN2	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	119567986	119567986	A	C	F774C	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,9,119567986,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ASTN2_HUMAN&rb=601&re=800&var=F774C	GRCh37	-1	SNP	novel	.	0	tTt/tGt	NA
OSCJM-PT20-600-T	23247	KIAA0556	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	27720050	27720050	G	A	E472K	Missense_Mutation	L	1.645	getma.org/?cm=var&var=hg19,16,27720050,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=K0556_HUMAN&rb=410&re=609&var=E472K	GRCh37	1	SNP	novel	.	0.00001	Gag/Aag	NM_015202.2
OSCJM-PT46-394-T	23259	DDHD2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	38103773	38103773	C	G	I360M	Missense_Mutation	M	2.33	getma.org/?cm=var&var=hg19,8,38103773,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=DDHD2_HUMAN&rb=313&re=383&var=I360M	GRCh37	1	SNP	novel	unknown	0	atC/atG	NM_015214.2
OSCJM-PT11-385-T	23277	CLUH	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	2598736	2598736	G	A	R787C	Missense_Mutation	M	2.44	getma.org/?cm=var&var=hg19,17,2598736,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=K0664_HUMAN&rb=763&re=949&var=R787C	GRCh37	-1	SNP	NA	NA	0	Cgc/Tgc	NM_015229.3
OSCJM-PT07-43-T	23284	ADGRL3	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	62598970	62598970	A	T	E298V	Missense_Mutation	M	2.315	getma.org/?cm=var&var=hg19,4,62598970,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LPHN3_HUMAN&rb=138&re=393&var=E298V	GRCh37	1	SNP	NA	NA	0	gAa/gTa	NA
OSCJM-PT20-600-T	23284	ADGRL3	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	62800640	62800640	G	C	R664P	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,4,62800640,G,C&fts=all	getma.org/pdb.php?prot=LPHN3_HUMAN&from=559&to=776&var=R651P	getma.org/?cm=msa&ty=f&p=LPHN3_HUMAN&rb=559&re=776&var=R651P	GRCh37	1	SNP	novel	.	0	cGt/cCt	NA
OSCJM-PT41-180-T	23284	ADGRL3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	62758596	62758596	C	T	A500V	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,4,62758596,C,T&fts=all	getma.org/pdb.php?prot=LPHN3_HUMAN&from=495&to=553&var=A500V	getma.org/?cm=msa&ty=f&p=LPHN3_HUMAN&rb=495&re=553&var=A500V	GRCh37	1	SNP	novel	unknown	0.0014	gCt/gTt	NA
OSCJM-PT46-394-T	23284	ADGRL3	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	62775402	62775402	A	T	D603V	Missense_Mutation	L	1.83	getma.org/?cm=var&var=hg19,4,62775402,A,T&fts=all	getma.org/pdb.php?prot=LPHN3_HUMAN&from=559&to=776&var=D603V	getma.org/?cm=msa&ty=f&p=LPHN3_HUMAN&rb=559&re=776&var=D603V	GRCh37	1	SNP	novel	unknown	0	gAt/gTt	NA
OSCJM-PT40-169-T	23286	WWC1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	167812359	167812359	C	T	Q125*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,5,167812359,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cag/Tag	NM_001161662.1,NM_001161661.1,NM_015238.2
OSCJM-PT14-353-T	23286	WWC1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT14-504-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	167891960	167891960	A	G	E1048G	Missense_Mutation	M	2.11	getma.org/?cm=var&var=hg19,5,167891960,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=KIBRA_HUMAN&rb=885&re=1084&var=E1048G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_001161662.1,NM_001161661.1,NM_015238.2
OSCJM-PT03-388-T	23294	ANKS1A	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	34949533	34949533	C	A	L168I	Missense_Mutation	M	2.8	getma.org/?cm=var&var=hg19,6,34949533,C,A&fts=all	getma.org/pdb.php?prot=ANS1A_HUMAN&from=148&to=180&var=L168I	getma.org/?cm=msa&ty=f&p=ANS1A_HUMAN&rb=148&re=180&var=L168I	GRCh37	1	SNP	NA	NA	0	Ctc/Atc	NM_015245.2
OSCJM-PT12-478-T	23305	ACSL6	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	131329779	131329779	C	T	R47Q	Missense_Mutation	M	2.585	getma.org/?cm=var&var=hg19,5,131329779,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ACSL6_HUMAN&rb=1&re=121&var=R47Q	GRCh37	-1	SNP	NA	NA	0.00002	cGg/cAg	NA
OSCJM-PT46-394-T	23309	SIN3B	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	16973345	16973345	G	C	S414T	Missense_Mutation	L	1.075	getma.org/?cm=var&var=hg19,19,16973345,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=SIN3B_HUMAN&rb=393&re=448&var=S414T	GRCh37	1	SNP	novel	unknown	0	aGt/aCt	NM_015260.2
OSCJM-PT22-229-T	23310	NCAPD3	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	134086911	134086911	G	T	H101N	Missense_Mutation	L	1.61	getma.org/?cm=var&var=hg19,11,134086911,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNDD3_HUMAN&rb=1&re=200&var=H101N	GRCh37	-1	SNP	novel	.	0	Cat/Aat	NM_015261.2
OSCJM-PT15-391-T	23312	DMXL2	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					15	51772263	51772263	G	A	A2213V	Missense_Mutation	M	2.24	getma.org/?cm=var&var=hg19,15,51772263,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DMXL2_HUMAN&rb=2105&re=2304&var=A2213V	GRCh37	-1	SNP	NA	NA	0.00003	gCg/gTg	NM_015263.3,NM_001174116.1
OSCJM-PT32-489-T	23316	CUX2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	111746236	111746236	G	A	M388I	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,12,111746236,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CUX2_HUMAN&rb=1&re=537&var=M388I	GRCh37	1	SNP	NA	NA	0	atG/atA	NM_015267.3
OSCJM-PT41-180-T	23317	DNAJC13	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	132257022	132257022	C	T	P2210S	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,3,132257022,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DJC13_HUMAN&rb=1363&re=2241&var=P2210S	GRCh37	1	SNP	novel	unknown	0	Cct/Tct	NM_015268.3
OSCJM-PT36-331-T	23324	MAN2B2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	6600012	6600012	A	G	M446V	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,4,6600012,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MA2B2_HUMAN&rb=440&re=474&var=M446V	GRCh37	1	SNP	NA	NA	0.4838	Atg/Gtg	NM_015274.1
OSCJM-PT43-201-T	23345	SYNE1	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT43-326-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	152650968	152650968	T	A	K4951M	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,6,152650968,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SYNE1_HUMAN&rb=4920&re=5119&var=K4951M	GRCh37	-1	SNP	novel	unknown	0	aAg/aTg	NM_182961.3
OSCJM-PT46-394-T	23345	SYNE1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	152456271	152456271	C	A	E8586*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,152456271,C,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Gag/Tag	NM_182961.3
OSCJM-PT32-489-T	23348	DOCK9	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	99566619	99566619	C	T	G308D	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,13,99566619,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DOCK9_HUMAN&rb=282&re=481&var=G309D	GRCh37	-1	SNP	NA	NA	0	gGt/gAt	NM_015296.2,NM_001130048.1
OSCJM-PT49-537-T	23352	UBR4	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	19513123	19513123	C	T	G554D	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,1,19513123,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBR4_HUMAN&rb=27&re=1659&var=G554D	GRCh37	-1	SNP	novel	unknown	0	gGc/gAc	NM_020765.2
OSCJM-PT50-575-T	23358	USP24	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	55624628	55624628	C	T	D384N	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,1,55624628,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBP24_HUMAN&rb=121&re=1439&var=D384N	GRCh37	-1	SNP	novel	unknown	0	Gat/Aat	NM_015306.2
OSCJM-PT22-229-T	23371	TNS2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	53455021	53455021	C	T	L1111F	Missense_Mutation	L	1.795	getma.org/?cm=var&var=hg19,12,53455021,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TENC1_HUMAN&rb=1025&re=1139&var=L1111F	GRCh37	1	SNP	novel	.	0	Ctc/Ttc	NM_170754.2
OSCJM-PT35-37-T	23371	TNS2	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT35-339-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	53457623	53457623	T	C	I1396T	Missense_Mutation	M	2.695	getma.org/?cm=var&var=hg19,12,53457623,T,C&fts=all	getma.org/pdb.php?prot=TENC1_HUMAN&from=1275&to=1409&var=I1396T	getma.org/?cm=msa&ty=f&p=TENC1_HUMAN&rb=1275&re=1409&var=I1396T	GRCh37	1	SNP	novel	.	0	aTt/aCt	NM_170754.2
OSCJM-PT40-169-T	23379	ICE1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT40-108-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	5461509	5461509	G	T	E688*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,5,5461509,G,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Gag/Tag	NM_015325.2
OSCJM-PT41-180-T	23381	SMG5	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	156246930	156246930	G	A	Q134*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,156246930,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Cag/Tag	NM_015327.2
OSCJM-PT43-201-T	23381	SMG5	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	156236416	156236416	G	A	L391F	Missense_Mutation	M	2.215	getma.org/?cm=var&var=hg19,1,156236416,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMG5_HUMAN&rb=197&re=433&var=L391F	GRCh37	-1	SNP	novel	unknown	0	Ctc/Ttc	NM_015327.2
OSCJM-PT37-513-T	23384	SPECC1L	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	24718693	24718693	A	T	Q582L	Missense_Mutation	N	-0.29	getma.org/?cm=var&var=hg19,22,24718693,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CYTSA_HUMAN&rb=1&re=886&var=Q582L	GRCh37	1	SNP	novel	.	0	cAg/cTg	NM_015330.4,NM_001254733.1
OSCJM-PT46-394-T	23387	SIK3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	116719925	116719925	C	T	G1138R	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,11,116719925,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SIK3_HUMAN&rb=548&re=1261&var=G1138R	GRCh37	-1	SNP	novel	unknown	0	Ggg/Agg	NM_025164.3
OSCJM-PT12-478-T	23389	MED13L	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT12-103-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	116429298	116429298	T	A	N1154I	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,12,116429298,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MD13L_HUMAN&rb=986&re=1185&var=N1154I	GRCh37	-1	SNP	NA	NA	0	aAt/aTt	NM_015335.4
OSCJM-PT50-575-T	23394	ADNP	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT50-81-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	49509761	49509761	T	C	Y497C	Missense_Mutation	L	1.24	getma.org/?cm=var&var=hg19,20,49509761,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ADNP_HUMAN&rb=401&re=600&var=Y497C	GRCh37	-1	SNP	novel	unknown	0	tAt/tGt	NM_001282532.1
OSCJM-PT50-575-T	23394	ADNP	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT50-81-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	49510967	49510967	T	C	N95S	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,20,49510967,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ADNP_HUMAN&rb=1&re=200&var=N95S	GRCh37	-1	SNP	novel	unknown	0	aAt/aGt	NM_001282532.1
OSCJM-PTC-139-T	23395	LARS2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	45559430	45559430	C	T	R694*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,3,45559430,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0.00002	Cga/Tga	NM_015340.3
OSCJM-PT50-575-T	23404	EXOSC2	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	133569257	133569257	G	C	V27L	Missense_Mutation	M	3.13	getma.org/?cm=var&var=hg19,9,133569257,G,C&fts=all	getma.org/pdb.php?prot=EXOS2_HUMAN&from=26&to=64&var=V27L	getma.org/?cm=msa&ty=f&p=EXOS2_HUMAN&rb=26&re=64&var=V27L	GRCh37	1	SNP	novel	unknown	0	Gtg/Ctg	NA
OSCJM-PT03-388-T	23411	SIRT1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	69648712	69648712	C	T	P207L	Missense_Mutation	M	2.395	getma.org/?cm=var&var=hg19,10,69648712,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SIR1_HUMAN&rb=201&re=400&var=P207L	GRCh37	1	SNP	novel	.	0	cCg/cTg	NM_012238.4
OSCJM-PT05-91-T	23430	TPSD1	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT05-46-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					16	1306560	1306560	G	-	E43Rfs*11	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.2313	caG/ca	NM_012217.2
OSCJM-PT50-575-T	23430	TPSD1	hgsc.bcm.edu	Illumina	Somatic	G	-	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					16	1306560	1306560	G	-	E43Rfs*11	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.2313	caG/ca	NM_012217.2
OSCJM-PT03-388-T	23460	ABCA6	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	67125792	67125792	T	G	M298L	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,17,67125792,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABCA6_HUMAN&rb=28&re=416&var=M298L	GRCh37	-1	SNP	NA	NA	0	Atg/Ctg	NM_080284.2
OSCJM-PT14-353-T	23460	ABCA6	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	67119503	67119503	G	T	S438*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,67119503,G,T&fts=all	NA	NA	GRCh37	-1	SNP	novel	.	0	tCa/tAa	NM_080284.2
OSCJM-PT14-353-T	23461	ABCA5	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					17	67282090	67282090	C	T	D741N	Missense_Mutation	N	0.44	getma.org/?cm=var&var=hg19,17,67282090,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABCA5_HUMAN&rb=644&re=843&var=D741N	GRCh37	-1	SNP	novel	unknown	0	Gac/Aac	NA
OSCJM-PTB-347-T	23474	ETHE1	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	44015685	44015685	G	T	P137T	Missense_Mutation	L	1.45	getma.org/?cm=var&var=hg19,19,44015685,G,T&fts=all	getma.org/pdb.php?prot=ETHE1_HUMAN&from=32&to=195&var=P137T	getma.org/?cm=msa&ty=f&p=ETHE1_HUMAN&rb=32&re=195&var=P137T	GRCh37	-1	SNP	novel	.	0	Cca/Aca	NM_014297.3
OSCJM-PT10-325-T	23500	DAAM2	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT10-70-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	39835521	39835521	A	G	I222V	Missense_Mutation	M	2.56	getma.org/?cm=var&var=hg19,6,39835521,A,G&fts=all	getma.org/pdb.php?prot=DAAM2_HUMAN&from=40&to=228&var=I222V	getma.org/?cm=msa&ty=f&p=DAAM2_HUMAN&rb=40&re=228&var=I222V	GRCh37	1	SNP	novel	unknown	0	Atc/Gtc	NM_001201427.1
OSCJM-PTD-578-T	23504	RIMBP2	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	130934748	130934748	T	C	Y176C	Missense_Mutation	H	4.04	getma.org/?cm=var&var=hg19,12,130934748,T,C&fts=all	getma.org/pdb.php?prot=RIMB2_HUMAN&from=172&to=232&var=Y176C	getma.org/?cm=msa&ty=f&p=RIMB2_HUMAN&rb=172&re=232&var=Y176C	GRCh37	-1	SNP	NA	NA	0	tAt/tGt	NM_015347.4
OSCJM-PT03-388-T	23511	NUP188	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	131756695	131756695	C	G	L1021V	Missense_Mutation	M	2.015	getma.org/?cm=var&var=hg19,9,131756695,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NU188_HUMAN&rb=945&re=1144&var=L1021V	GRCh37	1	SNP	NA	NA	0	Ctt/Gtt	NM_015354.2
OSCJM-PT49-537-T	23512	SUZ12	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	30322635	30322635	G	A	E550K	Missense_Mutation	M	2.295	getma.org/?cm=var&var=hg19,17,30322635,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SUZ12_HUMAN&rb=544&re=681&var=E550K	GRCh37	1	SNP	novel	unknown	0	Gaa/Aaa	NM_015355.2
OSCJM-PT49-537-T	23518	R3HDM1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	136393751	136393751	G	T	D301Y	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,2,136393751,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=R3HD1_HUMAN&rb=249&re=302&var=D301Y	GRCh37	1	SNP	novel	unknown	0	Gat/Tat	NM_015361.2
OSCJM-PT49-537-T	23518	R3HDM1	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT49-585-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	136393752	136393752	A	T	D301V	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,2,136393752,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=R3HD1_HUMAN&rb=249&re=302&var=D301V	GRCh37	1	SNP	novel	unknown	0	gAt/gTt	NM_015361.2
OSCJM-PT43-201-T	23522	KAT6B	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT43-326-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	76737194	76737194	A	G	E705G	Missense_Mutation	L	1.275	getma.org/?cm=var&var=hg19,10,76737194,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=KAT6B_HUMAN&rb=601&re=800&var=E705G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_001256468.1,NM_012330.3
OSCJM-PT03-388-T	23523	CABIN1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	24451420	24451420	G	C	R297S	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,22,24451420,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CABIN_HUMAN&rb=291&re=1359&var=R297S	GRCh37	1	SNP	NA	NA	0	agG/agC	NM_012295.3,NM_001201429.1
OSCJM-PTD-578-T	23538	OR52A1	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					11	5173296	5173296	G	A	Q102*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,11,5173296,G,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0.00002	Caa/Taa	NM_012375.2
OSCJM-PT46-394-T	23549	DNPEP	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	220246091	220246091	C	T	R402Q	Missense_Mutation	L	1.785	getma.org/?cm=var&var=hg19,2,220246091,C,T&fts=all	getma.org/pdb.php?prot=DNPEP_HUMAN&from=24&to=462&var=R392Q	getma.org/?cm=msa&ty=f&p=DNPEP_HUMAN&rb=24&re=462&var=R392Q	GRCh37	-1	SNP	novel	unknown	0.00003	cGa/cAa	NM_012100.2
OSCJM-PT14-353-T	23598	PATZ1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT14-504-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					22	31741483	31741483	T	A	N36Y	Missense_Mutation	M	2.015	getma.org/?cm=var&var=hg19,22,31741483,T,A&fts=all	getma.org/pdb.php?prot=PATZ1_HUMAN&from=30&to=160&var=N36Y	getma.org/?cm=msa&ty=f&p=PATZ1_HUMAN&rb=30&re=160&var=N36Y	GRCh37	-1	SNP	novel	unknown	0	Aac/Tac	NM_014323.2
OSCJM-PT01-166-T	23620	NTSR2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	11802096	11802096	G	A	L299F	Missense_Mutation	M	2.595	getma.org/?cm=var&var=hg19,2,11802096,G,A&fts=all	getma.org/pdb.php?prot=NTR2_HUMAN&from=49&to=358&var=L299F	getma.org/?cm=msa&ty=f&p=NTR2_HUMAN&rb=49&re=358&var=L299F	GRCh37	-1	SNP	rs145680805	NA	0.00001	Ctc/Ttc	NM_012344.3
OSCJM-PT43-201-T	23637	RABGAP1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	125752375	125752375	G	A	R269H	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,9,125752375,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RBGP1_HUMAN&rb=149&re=273&var=R269H	GRCh37	1	SNP	novel	unknown	0.00001	cGt/cAt	NM_012197.3
OSCJM-PT01-166-T	23646	PLD3	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	40884037	40884037	A	G	D477G	Missense_Mutation	L	1.545	getma.org/?cm=var&var=hg19,19,40884037,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLD3_HUMAN&rb=404&re=490&var=D477G	GRCh37	1	SNP	novel	unknown	0.0002	gAc/gGc	NM_001031696.2
OSCJM-PT11-385-T	23654	PLXNB2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	50720458	50720458	G	A	S1057F	Missense_Mutation	M	2.415	getma.org/?cm=var&var=hg19,22,50720458,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PLXB2_HUMAN&rb=983&re=1091&var=S1057F	GRCh37	-1	SNP	NA	NA	0	tCc/tTc	NM_012401.3
OSCJM-PT20-600-T	23742	NPAP1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	24923217	24923217	C	T	P735S	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,15,24923217,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CO002_HUMAN&rb=1&re=1154&var=P735S	GRCh37	1	SNP	novel	.	0	Ccc/Tcc	NM_018958.2
OSCJM-PT46-394-T	23765	IL17RA	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	17578719	17578719	C	T	R66*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,22,17578719,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_014339.6
OSCJM-PTB-347-T	24141	LAMP5	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	9510385	9510385	C	T	A254V	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,20,9510385,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LAMP5_HUMAN&rb=201&re=280&var=A254V	GRCh37	1	SNP	NA	NA	0.00001	gCg/gTg	NM_012261.3
OSCJM-PT50-575-T	25758	KIAA1549L	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	33566469	33566469	C	T	S680L	Missense_Mutation	N	-0.83	getma.org/?cm=var&var=hg19,11,33566469,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CK041_HUMAN&rb=500&re=699&var=S680L	GRCh37	1	SNP	novel	unknown	0.00003	tCg/tTg	NA
OSCJM-PT42-193-T	25791	NGEF	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT42-279-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	233839512	233839512	A	G	V30A	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,2,233839512,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NGEF_HUMAN&rb=1&re=200&var=V30A	GRCh37	-1	SNP	novel	unknown	0	gTg/gCg	NM_019850.2
OSCJM-PTD-578-T	25792	CIZ1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	130931408	130931408	A	G	F740L	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,9,130931408,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CIZ1_HUMAN&rb=711&re=898&var=F740L	GRCh37	-1	SNP	novel	unknown	0	Ttc/Ctc	NM_001131016.1
OSCJM-PT32-489-T	25836	NIPBL	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	37048756	37048756	A	G	M2248V	Missense_Mutation	M	2.05	getma.org/?cm=var&var=hg19,5,37048756,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NIPBL_HUMAN&rb=2236&re=2273&var=M2248V	GRCh37	1	SNP	NA	NA	0	Atg/Gtg	NM_133433.3,NM_015384.4
OSCJM-PT18-392-T	25839	COG4	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT18-570-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	70530320	70530320	T	C	N499S	Missense_Mutation	L	1.12	getma.org/?cm=var&var=hg19,16,70530320,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=COG4_HUMAN&rb=188&re=498&var=N495S	GRCh37	-1	SNP	novel	.	0	aAt/aGt	NM_015386.2,NM_001195139.1
OSCJM-PT13-258-T	25871	NEPRO	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	112727199	112727199	G	A	P352S	Missense_Mutation	L	1.245	getma.org/?cm=var&var=hg19,3,112727199,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CC017_HUMAN&rb=36&re=565&var=P352S	GRCh37	-1	SNP	rs2306858	byCluster;byFrequency;byHapMap	0.0422	Cct/Tct	NM_015412.3
OSCJM-PT03-388-T	25878	MXRA5	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	3236018	3236018	T	C	I1902V	Missense_Mutation	N	-0.415	getma.org/?cm=var&var=hg19,X,3236018,T,C&fts=all	getma.org/pdb.php?prot=MXRA5_HUMAN&from=1853&to=1945&var=I1902V	getma.org/?cm=msa&ty=f&p=MXRA5_HUMAN&rb=1853&re=1945&var=I1902V	GRCh37	-1	SNP	novel	unknown	0	Ata/Gta	NM_015419.3
OSCJM-PT32-489-T	25898	RCHY1	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	76407873	76407873	G	C	L221V	Missense_Mutation	M	2.605	getma.org/?cm=var&var=hg19,4,76407873,G,C&fts=all	getma.org/pdb.php?prot=ZN363_HUMAN&from=190&to=261&var=L221V	getma.org/?cm=msa&ty=f&p=ZN363_HUMAN&rb=190&re=261&var=L221V	GRCh37	-1	SNP	NA	NA	0	Ctc/Gtc	NA
OSCJM-PT49-537-T	25914	RTTN	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	67860600	67860600	G	C	P311A	Missense_Mutation	M	1.905	getma.org/?cm=var&var=hg19,18,67860600,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RTTN_HUMAN&rb=2&re=2221&var=P311A	GRCh37	-1	SNP	novel	unknown	0	Cct/Gct	NM_173630.3
OSCJM-PT10-325-T	25924	MYRIP	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	40231373	40231373	G	A	A362T	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,40231373,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYRIP_HUMAN&rb=152&re=859&var=A362T	GRCh37	1	SNP	NA	NA	0.00005	Gct/Act	NM_015460.2,NM_001284423.1
OSCJM-PT48-530-T	25925	ZNF521	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					18	22807248	22807248	G	T	L212M	Missense_Mutation	L	0.97	getma.org/?cm=var&var=hg19,18,22807248,G,T&fts=all	getma.org/pdb.php?prot=ZN521_HUMAN&from=188&to=213&var=L212M	getma.org/?cm=msa&ty=f&p=ZN521_HUMAN&rb=168&re=233&var=L212M	GRCh37	-1	SNP	NA	NA	0	Ctg/Atg	NM_015461.2
OSCJM-PT25-327-T	25925	ZNF521	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT25-74-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	22807025	22807025	C	T	C286Y	Missense_Mutation	M	3.06	getma.org/?cm=var&var=hg19,18,22807025,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZN521_HUMAN&rb=261&re=324&var=C286Y	GRCh37	-1	SNP	novel	.	0	tGc/tAc	NM_015461.2
OSCJM-PT45-364-T	25930	PTPN23	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	47453615	47453615	C	T	R1369C	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,3,47453615,C,T&fts=all	getma.org/pdb.php?prot=PTN23_HUMAN&from=1217&to=1451&var=R1369C	getma.org/?cm=msa&ty=f&p=PTN23_HUMAN&rb=1217&re=1451&var=R1369C	GRCh37	1	SNP	novel	unknown	0	Cgc/Tgc	NM_015466.2
OSCJM-PT27-562-T	25942	SIN3A	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT27-497-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	75702226	75702226	T	A	N423I	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,15,75702226,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SIN3A_HUMAN&rb=382&re=476&var=N423I	GRCh37	-1	SNP	novel	.	0	aAt/aTt	NM_001145357.1
OSCJM-PT32-489-T	25963	TMEM87A	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	42560198	42560198	T	C	I80V	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,15,42560198,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TM87A_HUMAN&rb=1&re=166&var=I80V	GRCh37	-1	SNP	NA	NA	0.00001	Ata/Gta	NM_015497.3
OSCJM-PT11-385-T	25966	C2CD2	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					21	43327154	43327154	G	A	A422V	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,21,43327154,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CU025_HUMAN&rb=347&re=546&var=A422V	GRCh37	-1	SNP	NA	NA	0	gCt/gTt	NM_015500.1
OSCJM-PT03-388-T	25981	DNAH1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	52398930	52398930	G	A	V1805M	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,3,52398930,G,A&fts=all	getma.org/pdb.php?prot=DYH1_HUMAN&from=1774&to=1856&var=V1805M	getma.org/?cm=msa&ty=f&p=DYH1_HUMAN&rb=1774&re=1856&var=V1805M	GRCh37	1	SNP	novel	NA	0.00002	Gtg/Atg	NM_015512.4
OSCJM-PT03-388-T	25981	DNAH1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	52433688	52433688	A	G	E4190G	Missense_Mutation	M	3.47	getma.org/?cm=var&var=hg19,3,52433688,A,G&fts=all	getma.org/pdb.php?prot=DYH1_HUMAN&from=3619&to=4327&var=E4255G	getma.org/?cm=msa&ty=f&p=DYH1_HUMAN&rb=3619&re=4327&var=E4255G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_015512.4
OSCJM-PTD-578-T	26005	C2CD3	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					11	73803532	73803532	C	T	G1149E	Missense_Mutation	L	1.255	getma.org/?cm=var&var=hg19,11,73803532,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=C2CD3_HUMAN&rb=1001&re=1200&var=G1149E	GRCh37	-1	SNP	NA	NA	0	gGa/gAa	NM_001286577.1
OSCJM-PTB-347-T	26011	TENM4	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	78383195	78383195	G	T	Y1892*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,11,78383195,G,T&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	taC/taA	NM_001098816.2
OSCJM-PTA-367-T	26017	FAM32A	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTA-308-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	16301762	16301762	A	G	K112R	Missense_Mutation	M	2.93	getma.org/?cm=var&var=hg19,19,16301762,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=FA32A_HUMAN&rb=57&re=112&var=K112R	GRCh37	1	SNP	novel	unknown	0	aAg/aGg	NM_014077.2
OSCJM-PT20-600-T	26038	CHD5	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	6196844	6196844	C	T	E840K	Missense_Mutation	N	-0.02	getma.org/?cm=var&var=hg19,1,6196844,C,T&fts=all	getma.org/pdb.php?prot=CHD5_HUMAN&from=703&to=999&var=E840K	getma.org/?cm=msa&ty=f&p=CHD5_HUMAN&rb=703&re=999&var=E840K	GRCh37	-1	SNP	novel	NA	0	Gag/Aag	NM_015557.2
OSCJM-PT20-600-T	26038	CHD5	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	6219493	6219493	T	C	K97R	Missense_Mutation	L	0.955	getma.org/?cm=var&var=hg19,1,6219493,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CHD5_HUMAN&rb=1&re=145&var=K97R	GRCh37	-1	SNP	novel	.	0	aAa/aGa	NM_015557.2
OSCJM-PT49-537-T	26053	AUTS2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	70255890	70255890	C	T	R1230C	Missense_Mutation	L	1.73	getma.org/?cm=var&var=hg19,7,70255890,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=AUTS2_HUMAN&rb=1&re=1257&var=R1230C	GRCh37	1	SNP	NA	NA	0.00001	Cgc/Tgc	NM_015570.2
OSCJM-PT36-331-T	26053	AUTS2	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	70252278	70252278	C	G	R798G	Missense_Mutation	L	1.73	getma.org/?cm=var&var=hg19,7,70252278,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=AUTS2_HUMAN&rb=1&re=1257&var=R798G	GRCh37	1	SNP	novel	.	0	Cga/Gga	NM_015570.2
OSCJM-PT03-388-T	26057	ANKRD17	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	73957412	73957412	G	A	S1978L	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,4,73957412,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ANR17_HUMAN&rb=1805&re=2601&var=S1978L	GRCh37	-1	SNP	NA	NA	0	tCa/tTa	NM_032217.3
OSCJM-PTD-578-T	26057	ANKRD17	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	74007554	74007554	G	C	R746G	Missense_Mutation	L	1.495	getma.org/?cm=var&var=hg19,4,74007554,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ANR17_HUMAN&rb=727&re=926&var=R746G	GRCh37	-1	SNP	NA	NA	0	Cgt/Ggt	NM_032217.3
OSCJM-PT48-530-T	26057	ANKRD17	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	73990767	73990767	G	C	P1119A	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,4,73990767,G,C&fts=all	getma.org/pdb.php?prot=ANR17_HUMAN&from=1066&to=1146&var=P1119A	getma.org/?cm=msa&ty=f&p=ANR17_HUMAN&rb=1066&re=1146&var=P1119A	GRCh37	-1	SNP	novel	unknown	0	Cca/Gca	NM_032217.3
OSCJM-PT48-530-T	26084	ARHGEF26	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT48-60-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	153935668	153935668	T	A	L619Q	Missense_Mutation	N	-0.695	getma.org/?cm=var&var=hg19,3,153935668,T,A&fts=all	getma.org/pdb.php?prot=ARHGQ_HUMAN&from=443&to=622&var=L619Q	getma.org/?cm=msa&ty=f&p=ARHGQ_HUMAN&rb=443&re=622&var=L619Q	GRCh37	1	SNP	novel	unknown	0	cTa/cAa	NM_001251962.1
OSCJM-PT35-37-T	26093	CCDC9	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT35-339-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	47774772	47774772	T	C	L478P	Missense_Mutation	N	-1.79	getma.org/?cm=var&var=hg19,19,47774772,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CCDC9_HUMAN&rb=1&re=530&var=L478P	GRCh37	1	SNP	rs888836	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.5082	cTg/cCg	NM_015603.2
OSCJM-PT20-600-T	26115	TANC2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	61498529	61498529	G	A	C1729Y	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,17,61498529,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TANC2_HUMAN&rb=1362&re=1988&var=C1729Y	GRCh37	1	SNP	novel	.	0	tGt/tAt	NM_025185.3
OSCJM-PTC-139-T	26154	ABCA12	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTC-295-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	215866332	215866332	T	C	E938G	Missense_Mutation	M	2.25	getma.org/?cm=var&var=hg19,2,215866332,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ABCAC_HUMAN&rb=892&re=1270&var=E938G	GRCh37	-1	SNP	novel	unknown	0	gAa/gGa	NM_173076.2
OSCJM-PT36-331-T	26166	RGS22	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT36-126-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	101014498	101014498	T	A	N908Y	Missense_Mutation	M	2.015	getma.org/?cm=var&var=hg19,8,101014498,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RGS22_HUMAN&rb=852&re=978&var=N908Y	GRCh37	-1	SNP	novel	.	0	Aac/Tac	NM_015668.3
OSCJM-PT45-364-T	26166	RGS22	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT45-246-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	101074907	101074907	T	A	K476*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,8,101074907,T,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Aaa/Taa	NM_015668.3
OSCJM-PT30-592-T	26168	SENP3	hgsc.bcm.edu	SOLID	Somatic	-	T	OSCJM-PT30-587-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					17	7468289	7468290	-	T	L325Pfs*13	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	novel	.	0	-/T	NM_015670.5
OSCJM-PT15-391-T	26173	INTS1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	1517429	1517429	C	A	E1592*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,7,1517429,C,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Gag/Tag	NM_001080453.2
OSCJM-PT22-229-T	26230	TIAM2	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	155469273	155469273	G	T	W611C	Missense_Mutation	M	2.485	getma.org/?cm=var&var=hg19,6,155469273,G,T&fts=all	getma.org/pdb.php?prot=TIAM2_HUMAN&from=507&to=620&var=W611C	getma.org/?cm=msa&ty=f&p=TIAM2_HUMAN&rb=507&re=620&var=W611C	GRCh37	1	SNP	novel	.	0	tgG/tgT	NM_012454.3
OSCJM-PT20-600-T	26278	SACS	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	23906065	23906065	C	T	E3984K	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,13,23906065,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SACS_HUMAN&rb=3882&re=4081&var=E3984K	GRCh37	-1	SNP	novel	.	0	Gaa/Aaa	NA
OSCJM-PT14-353-T	26301	GBGT1	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT14-504-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	136031430	136031430	T	C	R54G	Missense_Mutation	N	-0.895	getma.org/?cm=var&var=hg19,9,136031430,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=GBGT1_HUMAN&rb=11&re=347&var=R54G	GRCh37	-1	SNP	novel	unknown	0	Agg/Ggg	NA
OSCJM-PT37-513-T	26339	OR5K1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	98188952	98188952	T	A	Y178N	Missense_Mutation	M	3.03	getma.org/?cm=var&var=hg19,3,98188952,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=OR5K1_HUMAN&rb=139&re=283&var=Y178N	GRCh37	1	SNP	novel	.	0	Tac/Aac	NM_001004736.2
OSCJM-PT22-229-T	26468	LHX6	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	124975924	124975924	C	T	E310K	Missense_Mutation	L	0.975	getma.org/?cm=var&var=hg19,9,124975924,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LHX6_HUMAN&rb=286&re=358&var=E310K	GRCh37	-1	SNP	novel	.	0	Gag/Aag	NM_001242334.1
OSCJM-PT37-513-T	26493	OR8B8	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	124310622	124310622	A	T	Y120*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,11,124310622,A,T&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	taT/taA	NM_012378.1
OSCJM-PT45-364-T	26509	MYOF	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	95069815	95069815	G	C	L2037V	Missense_Mutation	N	0.06	getma.org/?cm=var&var=hg19,10,95069815,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MYOF_HUMAN&rb=1904&re=2061&var=L2037V	GRCh37	-1	SNP	novel	unknown	0	Ctg/Gtg	NM_013451.3
OSCJM-PT32-489-T	26523	AGO1	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	36372612	36372612	T	G	Y492D	Missense_Mutation	M	2.825	getma.org/?cm=var&var=hg19,1,36372612,T,G&fts=all	getma.org/pdb.php?prot=AGO1_HUMAN&from=370&to=514&var=Y492D	getma.org/?cm=msa&ty=f&p=AGO1_HUMAN&rb=370&re=514&var=Y492D	GRCh37	1	SNP	NA	NA	0	Tat/Gat	NM_012199.2
OSCJM-PT43-201-T	26538	OR10H2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	15839061	15839061	G	A	E70K	Missense_Mutation	M	3.48	getma.org/?cm=var&var=hg19,19,15839061,G,A&fts=all	getma.org/pdb.php?prot=O10H2_HUMAN&from=1&to=138&var=E70K	getma.org/?cm=msa&ty=f&p=O10H2_HUMAN&rb=1&re=138&var=E70K	GRCh37	1	SNP	novel	unknown	0	Gag/Aag	NM_013939.2
OSCJM-PT35-37-T	26648	OR7E24	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT35-339-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	9362659	9362659	G	A	D314N	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,19,9362659,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=O7E24_HUMAN&rb=302&re=339&var=D314N	GRCh37	1	SNP	NA	NA	0	Gac/Aac	NM_001079935.1
OSCJM-PT45-364-T	26689	OR4D1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	56232905	56232905	C	T	R131W	Missense_Mutation	M	2.44	getma.org/?cm=var&var=hg19,17,56232905,C,T&fts=all	getma.org/pdb.php?prot=OR4D1_HUMAN&from=1&to=138&var=R131W	getma.org/?cm=msa&ty=f&p=OR4D1_HUMAN&rb=1&re=138&var=R131W	GRCh37	1	SNP	novel	unknown	0	Cgg/Tgg	NM_012374.1
OSCJM-PT07-43-T	26873	OPLAH	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT07-87-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	145111959	145111959	T	C	E533G	Missense_Mutation	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	gAa/gGa	NM_017570.3
OSCJM-PT50-575-T	26958	COPG2	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PT50-81-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					7	130147663	130147663	A	-	L34Rfs*6	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	cTg/cg	NA
OSCJM-PT38-234-T	26960	NBEA	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT38-446-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	35730325	35730325	A	G	N878S	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,13,35730325,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NBEA_HUMAN&rb=804&re=1003&var=N878S	GRCh37	1	SNP	novel	.	0	aAc/aGc	NM_015678.4
OSCJM-PTD-578-T	26973	CHORDC1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	89944413	89944413	G	C	L135V	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,11,89944413,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=CHRD1_HUMAN&rb=66&re=152&var=L135V	GRCh37	-1	SNP	NA	NA	0	Ctg/Gtg	NM_012124.2
OSCJM-PT41-180-T	26974	ZNF285	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	44890755	44890755	C	T	R551H	Missense_Mutation	N	0.39	getma.org/?cm=var&var=hg19,19,44890755,C,T&fts=all	getma.org/pdb.php?prot=ZN285_HUMAN&from=540&to=562&var=R551H	getma.org/?cm=msa&ty=f&p=ZN285_HUMAN&rb=520&re=582&var=R551H	GRCh37	-1	SNP	novel	Unknown	0.00001	cGt/cAt	NM_152354.3
OSCJM-PT05-91-T	26998	FETUB	hgsc.bcm.edu	Cross	Somatic	C	G	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					3	186358282	186358282	C	G	I11M	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,3,186358282,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=FETUB_HUMAN&rb=1&re=30&var=I11M	GRCh37	1	SNP	novel	unknown	0	atC/atG	NM_014375.2
OSCJM-PT46-394-T	27012	KCNV1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	110984838	110984838	C	T	V214I	Missense_Mutation	N	0.235	getma.org/?cm=var&var=hg19,8,110984838,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=KCNV1_HUMAN&rb=151&re=243&var=V214I	GRCh37	-1	SNP	not_in_dbSNP	NA	0.00001	Gtc/Atc	NM_014379.2
OSCJM-PT05-91-T	27030	MLH3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	75505100	75505100	C	T	D1196N	Missense_Mutation	M	2.025	getma.org/?cm=var&var=hg19,14,75505100,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLH3_HUMAN&rb=1189&re=1372&var=D1196N	GRCh37	-1	SNP	novel	unknown	0	Gat/Aat	NM_001040108.1
OSCJM-PT20-600-T	27035	NOX1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT20-506-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	100117445	100117445	C	T	V203I	Missense_Mutation	L	1.135	getma.org/?cm=var&var=hg19,X,100117445,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=NOX1_HUMAN&rb=54&re=219&var=V203I	GRCh37	-1	SNP	novel	.	0	Gtc/Atc	NM_001271815.1,NM_013955.2,NM_007052.4
OSCJM-PT35-37-T	27043	PELP1	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT35-339-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	4578612	4578612	T	A	I372F	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,17,4578612,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PELP1_HUMAN&rb=227&re=422&var=I372F	GRCh37	-1	SNP	novel	.	0	Atc/Ttc	NA
OSCJM-PT46-394-T	27130	INVS	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	103055198	103055198	C	A	Q887K	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,9,103055198,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=INVS_HUMAN&rb=777&re=916&var=Q887K	GRCh37	1	SNP	novel	unknown	0	Cag/Aag	NM_014425.3
OSCJM-PT49-537-T	27136	MORC1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	108776278	108776278	G	A	R363*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,3,108776278,G,A&fts=all	NA	NA	GRCh37	-1	SNP	rs376429014	HighImp	0	Cga/Tga	NM_014429.3
OSCJM-PT46-394-T	27136	MORC1	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	108812388	108812388	C	A	G195V	Missense_Mutation	M	3.355	getma.org/?cm=var&var=hg19,3,108812388,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MORC1_HUMAN&rb=163&re=362&var=G195V	GRCh37	-1	SNP	novel	unknown	0	gGt/gTt	NM_014429.3
OSCJM-PTC-139-T	27148	STK36	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTC-295-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	219558669	219558669	T	C	S767P	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,2,219558669,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=STK36_HUMAN&rb=381&re=1106&var=S767P	GRCh37	1	SNP	novel	unknown	0	Tcc/Ccc	NM_015690.4
OSCJM-PT46-394-T	27159	CHIA	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	111854964	111854964	G	A	E70K	Missense_Mutation	M	2.435	getma.org/?cm=var&var=hg19,1,111854964,G,A&fts=all	getma.org/pdb.php?prot=CHIA_HUMAN&from=22&to=365&var=E70K	getma.org/?cm=msa&ty=f&p=CHIA_HUMAN&rb=22&re=365&var=E70K	GRCh37	1	SNP	novel	unknown	0.00001	Gaa/Aaa	NA
OSCJM-PT43-201-T	27180	SIGLEC9	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT43-326-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	51628316	51628316	G	A	V29M	Missense_Mutation	M	2.555	getma.org/?cm=var&var=hg19,19,51628316,G,A&fts=all	getma.org/pdb.php?prot=SIGL9_HUMAN&from=19&to=144&var=V29M	getma.org/?cm=msa&ty=f&p=SIGL9_HUMAN&rb=19&re=144&var=V29M	GRCh37	1	SNP	novel	unknown	0	Gtg/Atg	NM_014441.2
OSCJM-PTB-347-T	27241	BBS9	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	33376101	33376101	G	T	Q355H	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,7,33376101,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PTHB1_HUMAN&rb=111&re=885&var=Q355H	GRCh37	1	SNP	NA	NA	0.00001	caG/caT	NM_198428.2
OSCJM-PT14-353-T	27241	BBS9	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT14-504-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	33192415	33192415	T	A	V72E	Missense_Mutation	L	1.67	getma.org/?cm=var&var=hg19,7,33192415,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PTHB1_HUMAN&rb=1&re=110&var=V72E	GRCh37	1	SNP	novel	.	0	gTg/gAg	NM_198428.2
OSCJM-PT03-388-T	27253	PCDH17	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	58207667	58207667	C	A	N329K	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,13,58207667,C,A&fts=all	getma.org/pdb.php?prot=PCD17_HUMAN&from=248&to=342&var=N329K	getma.org/?cm=msa&ty=f&p=PCD17_HUMAN&rb=248&re=342&var=N329K	GRCh37	1	SNP	NA	NA	0	aaC/aaA	NM_001040429.2
OSCJM-PT22-229-T	27253	PCDH17	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT22-321-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	58298857	58298857	G	T	R970L	Missense_Mutation	L	1.75	getma.org/?cm=var&var=hg19,13,58298857,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCD17_HUMAN&rb=751&re=1157&var=R970L	GRCh37	1	SNP	novel	.	0	cGc/cTc	NM_001040429.2
OSCJM-PT37-513-T	27255	CNTN6	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	1414564	1414564	C	T	H571Y	Missense_Mutation	H	3.565	getma.org/?cm=var&var=hg19,3,1414564,C,T&fts=all	getma.org/pdb.php?prot=CNTN6_HUMAN&from=500&to=594&var=H571Y	getma.org/?cm=msa&ty=f&p=CNTN6_HUMAN&rb=500&re=594&var=H571Y	GRCh37	1	SNP	NA	NA	0	Cat/Tat	NM_014461.2
OSCJM-PTD-578-T	27296	TP53TG5	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					20	44004161	44004161	T	G	N96H	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,20,44004161,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=T53G5_HUMAN&rb=1&re=289&var=N96H	GRCh37	-1	SNP	novel	unknown	0	Aat/Cat	NM_014477.2
OSCJM-PT49-537-T	27330	RPS6KA6	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	83442871	83442871	G	C	R13G	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,X,83442871,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=KS6A6_HUMAN&rb=1&re=72&var=R13G	GRCh37	-1	SNP	novel	unknown	0	Cga/Gga	NM_014496.4
OSCJM-PT50-575-T	27343	POLL	hgsc.bcm.edu	Illumina	Somatic	-	A	OSCJM-PT50-81-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					10	103344482	103344483	-	A	T257Hfs*35	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	unknown	0	atc/atTc	NA
OSCJM-PT03-388-T	27347	STK39	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	168996888	168996888	C	T	D251N	Missense_Mutation	L	1.28	getma.org/?cm=var&var=hg19,2,168996888,C,T&fts=all	getma.org/pdb.php?prot=STK39_HUMAN&from=63&to=337&var=D251N	getma.org/?cm=msa&ty=f&p=STK39_HUMAN&rb=63&re=337&var=D251N	GRCh37	-1	SNP	novel	unknown	0	Gac/Aac	NM_013233.2
OSCJM-PT03-388-T	27430	MAT2B	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	162940613	162940613	A	T	N104I	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,5,162940613,A,T&fts=all	getma.org/pdb.php?prot=MAT2B_HUMAN&from=29&to=324&var=N104I	getma.org/?cm=msa&ty=f&p=MAT2B_HUMAN&rb=29&re=324&var=N104I	GRCh37	1	SNP	NA	NA	0	aAt/aTt	NM_013283.4
OSCJM-PTA-367-T	27445	PCLO	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	82579315	82579315	G	A	P3530L	Missense_Mutation	M	2.045	getma.org/?cm=var&var=hg19,7,82579315,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCLO_HUMAN&rb=1829&re=4439&var=P3461L	GRCh37	-1	SNP	NA	NA	0	cCa/cTa	NM_033026.5
OSCJM-PTD-578-T	27445	PCLO	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	82545553	82545553	G	T	Q3917K	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,7,82545553,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCLO_HUMAN&rb=1829&re=4439&var=Q3848K	GRCh37	-1	SNP	NA	NA	0	Cag/Aag	NM_033026.5
OSCJM-PT03-388-T	27445	PCLO	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	82763613	82763613	G	A	Q1085*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,7,82763613,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Caa/Taa	NM_033026.5
OSCJM-PT46-394-T	27445	PCLO	hgsc.bcm.edu	Illumina	weird	G	T	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	82581251	82581251	G	T	F3006L	Missense_Mutation	N	0.295	getma.org/?cm=var&var=hg19,7,82581251,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCLO_HUMAN&rb=1829&re=4439&var=F2937L	GRCh37	-1	SNP	novel	unknown	0	ttC/ttA	NM_033026.5
OSCJM-PT47-449-T	28234	SLCO1B3	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT47-225-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	21015771	21015771	T	A	I237N	Missense_Mutation	M	2.755	getma.org/?cm=var&var=hg19,12,21015771,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SO1B3_HUMAN&rb=27&re=622&var=I237N	GRCh37	1	SNP	novel	unknown	0	aTt/aAt	NA
OSCJM-PTD-578-T	28968	SLC6A16	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	49813315	49813315	T	A	M228L	Missense_Mutation	N	-1.15	getma.org/?cm=var&var=hg19,19,49813315,T,A&fts=all	getma.org/pdb.php?prot=S6A16_HUMAN&from=103&to=685&var=M228L	getma.org/?cm=msa&ty=f&p=S6A16_HUMAN&rb=103&re=685&var=M228L	GRCh37	-1	SNP	NA	NA	0	Atg/Ttg	NM_014037.2
OSCJM-PT14-353-T	29062	WDR91	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	134878422	134878422	G	C	L466L	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	ctC/ctG	NM_014149.3
OSCJM-PT19-481-T	29068	ZBTB44	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT19-3-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	130106919	130106919	C	T	R446H	Missense_Mutation	M	1.98	getma.org/?cm=var&var=hg19,11,130106919,C,T&fts=all	getma.org/pdb.php?prot=ZBT44_HUMAN&from=439&to=454&var=R446H	getma.org/?cm=msa&ty=f&p=ZBT44_HUMAN&rb=409&re=484&var=R446H	GRCh37	-1	SNP	novel	.	0.00001	cGc/cAc	NA
OSCJM-PT48-530-T	29072	SETD2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	47144868	47144868	G	A	H1629Y	Missense_Mutation	H	4.21	getma.org/?cm=var&var=hg19,3,47144868,G,A&fts=all	getma.org/pdb.php?prot=SETD2_HUMAN&from=1561&to=1667&var=H1629Y	getma.org/?cm=msa&ty=f&p=SETD2_HUMAN&rb=1561&re=1667&var=H1629Y	GRCh37	-1	SNP	NA	NA	0	Cac/Tac	NM_014159.6
OSCJM-PT41-180-T	29088	MRPL15	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	55049152	55049152	C	T	R64C	Missense_Mutation	H	3.865	getma.org/?cm=var&var=hg19,8,55049152,C,T&fts=all	getma.org/pdb.php?prot=RM15_HUMAN&from=43&to=177&var=R64C	getma.org/?cm=msa&ty=f&p=RM15_HUMAN&rb=43&re=177&var=R64C	GRCh37	1	SNP	novel	unknown	0	Cgc/Tgc	NM_014175.3
OSCJM-PT50-575-T	29102	DROSHA	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	31405807	31405807	G	C	A1324G	Missense_Mutation	H	3.63	getma.org/?cm=var&var=hg19,5,31405807,G,C&fts=all	getma.org/pdb.php?prot=RNC_HUMAN&from=1261&to=1332&var=A1324G	getma.org/?cm=msa&ty=f&p=RNC_HUMAN&rb=1261&re=1332&var=A1324G	GRCh37	-1	SNP	novel	unknown	0	gCa/gGa	NA
OSCJM-PT46-394-T	29118	DDX25	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	125778303	125778303	A	T	N138Y	Missense_Mutation	M	3.145	getma.org/?cm=var&var=hg19,11,125778303,A,T&fts=all	getma.org/pdb.php?prot=DDX25_HUMAN&from=121&to=288&var=N138Y	getma.org/?cm=msa&ty=f&p=DDX25_HUMAN&rb=121&re=288&var=N138Y	GRCh37	1	SNP	novel	unknown	0	Aac/Tac	NM_013264.4
OSCJM-PT10-325-T	29775	CARD10	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	37891825	37891825	G	A	R749W	Missense_Mutation	M	2.305	getma.org/?cm=var&var=hg19,22,37891825,G,A&fts=all	getma.org/pdb.php?prot=CAR10_HUMAN&from=700&to=899&var=R749W	getma.org/?cm=msa&ty=f&p=CAR10_HUMAN&rb=700&re=899&var=R749W	GRCh37	-1	SNP	NA	NA	0.00001	Cgg/Tgg	NM_014550.3
OSCJM-PT12-478-T	29893	PSMC3IP	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	40726195	40726195	G	C	Q87E	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,17,40726195,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=HOP2_HUMAN&rb=11&re=181&var=Q87E	GRCh37	-1	SNP	NA	NA	0	Caa/Gaa	NM_001256016.1,NM_016556.3,NM_001256015.1
OSCJM-PT07-43-T	29904	EEF2K	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT07-87-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	22237118	22237118	A	G	H23R	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,16,22237118,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=EF2K_HUMAN&rb=1&re=137&var=H23R	GRCh37	1	SNP	rs9935059	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.1441	cAt/cGt	NM_013302.3
OSCJM-PT01-166-T	29906	ST8SIA5	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					18	44260048	44260048	C	T	R363Q	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,18,44260048,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=SIA8E_HUMAN&rb=112&re=372&var=R363Q	GRCh37	-1	SNP	NA	NA	0	cGa/cAa	NM_013305.4
OSCJM-PT40-169-T	29942	PURG	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	30890027	30890027	C	T	W91*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,8,30890027,C,T&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	tGg/tAg	NM_013357.2
OSCJM-PT35-37-T	29944	PNMA3	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	152226651	152226651	C	G	F413L	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,X,152226651,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PNMA3_HUMAN&rb=1&re=461&var=F413L	GRCh37	1	SNP	novel	.	0	ttC/ttG	NA
OSCJM-PT18-392-T	29953	TRHDE	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	72969289	72969289	C	T	A718V	Missense_Mutation	M	2.525	getma.org/?cm=var&var=hg19,12,72969289,C,T&fts=all	getma.org/pdb.php?prot=TRHDE_HUMAN&from=678&to=1004&var=A718V	getma.org/?cm=msa&ty=f&p=TRHDE_HUMAN&rb=678&re=1004&var=A718V	GRCh37	1	SNP	novel	.	0	gCg/gTg	NM_013381.2
OSCJM-PT33-288-T	29953	TRHDE	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT33-571-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	72936105	72936105	T	A	M541K	Missense_Mutation	M	2.645	getma.org/?cm=var&var=hg19,12,72936105,T,A&fts=all	getma.org/pdb.php?prot=TRHDE_HUMAN&from=531&to=677&var=M541K	getma.org/?cm=msa&ty=f&p=TRHDE_HUMAN&rb=531&re=677&var=M541K	GRCh37	1	SNP	novel	.	0	aTg/aAg	NM_013381.2
OSCJM-PT43-201-T	29986	SLC39A2	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	21469222	21469222	C	A	D138E	Missense_Mutation	N	-1.89	getma.org/?cm=var&var=hg19,14,21469222,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=S39A2_HUMAN&rb=5&re=306&var=D138E	GRCh37	1	SNP	novel	unknown	0.00001	gaC/gaA	NM_014579.3
OSCJM-PT01-166-T	29995	LMCD1	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					3	8609125	8609125	G	A	X314_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_014583.3
OSCJM-PT01-166-T	29995	LMCD1	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					3	8609159	8609159	G	A	D325N	Missense_Mutation	L	0.83	getma.org/?cm=var&var=hg19,3,8609159,G,A&fts=all	getma.org/pdb.php?prot=LMCD1_HUMAN&from=308&to=364&var=D325N	getma.org/?cm=msa&ty=f&p=LMCD1_HUMAN&rb=308&re=364&var=D325N	GRCh37	1	SNP	NA	NA	0	Gat/Aat	NM_014583.3
OSCJM-PT36-331-T	50485	SMARCAL1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	217285104	217285104	C	G	S315R	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,2,217285104,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMAL1_HUMAN&rb=303&re=342&var=S315R	GRCh37	1	SNP	rs2066522	byCluster;byFrequency;byHapMap	0.0247	agC/agG	NM_014140.3
OSCJM-PT45-364-T	50485	SMARCAL1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	217297475	217297475	G	A	A457T	Missense_Mutation	H	3.765	getma.org/?cm=var&var=hg19,2,217297475,G,A&fts=all	getma.org/pdb.php?prot=SMAL1_HUMAN&from=439&to=708&var=A457T	getma.org/?cm=msa&ty=f&p=SMAL1_HUMAN&rb=439&re=708&var=A457T	GRCh37	1	SNP	novel	unknown	0.00003	Gct/Act	NM_014140.3
OSCJM-PT11-385-T	50488	MINK1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT11-517-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	4799363	4799363	G	A	A1144T	Missense_Mutation	M	2.8	getma.org/?cm=var&var=hg19,17,4799363,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MINK1_HUMAN&rb=1023&re=1303&var=A1144T	GRCh37	1	SNP	novel	unknown	0	Gcc/Acc	NM_001024937.3,NM_015716.4,NM_153827.4
OSCJM-PT40-169-T	50489	CD207	hgsc.bcm.edu	Illumina	Somatic	-	C	OSCJM-PT40-108-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					2	71060135	71060136	-	C	N205Efs*14	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	NA	NA	0	-/G	NM_015717.3
OSCJM-PT37-513-T	50613	UBQLN3	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	5530406	5530406	C	A	G128V	Missense_Mutation	M	2.48	getma.org/?cm=var&var=hg19,11,5530406,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBQL3_HUMAN&rb=95&re=294&var=G128V	GRCh37	-1	SNP	novel	.	0	gGg/gTg	NM_017481.2
OSCJM-PT14-353-T	50618	ITSN2	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT14-504-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	24484595	24484595	A	G	V791A	Missense_Mutation	N	-0.72	getma.org/?cm=var&var=hg19,2,24484595,A,G&fts=all	getma.org/pdb.php?prot=ITSN2_HUMAN&from=763&to=810&var=V791A	getma.org/?cm=msa&ty=f&p=ITSN2_HUMAN&rb=763&re=810&var=V791A	GRCh37	-1	SNP	novel	unknown	0	gTa/gCa	NM_006277.2
OSCJM-PT48-530-T	50618	ITSN2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT48-60-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	24536381	24536381	G	A	R46C	Missense_Mutation	M	3.41	getma.org/?cm=var&var=hg19,2,24536381,G,A&fts=all	getma.org/pdb.php?prot=ITSN2_HUMAN&from=15&to=106&var=R46C	getma.org/?cm=msa&ty=f&p=ITSN2_HUMAN&rb=15&re=106&var=R46C	GRCh37	-1	SNP	novel	unknown	0.00001	Cgt/Tgt	NM_006277.2
OSCJM-PT50-575-T	50626	CYHR1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	145689973	145689973	C	T	G39D	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,8,145689973,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CYHR1_HUMAN&rb=1&re=128&var=G39D	GRCh37	-1	SNP	novel	unknown	0	gGc/gAc	NM_138496.1
OSCJM-PT36-331-T	50636	ANO7	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT36-126-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	242155561	242155561	C	T	A681V	Missense_Mutation	L	1.385	getma.org/?cm=var&var=hg19,2,242155561,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ANO7_HUMAN&rb=335&re=888&var=A681V	GRCh37	1	SNP	novel	.	0.00004	gCg/gTg	NM_001001891.3
OSCJM-PTD-578-T	50945	TBX22	hgsc.bcm.edu	Cross	Somatic	T	C	OSCJM-PTD-439-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					X	79283536	79283536	T	C	F304L	Missense_Mutation	N	-1.04	getma.org/?cm=var&var=hg19,X,79283536,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBX22_HUMAN&rb=285&re=484&var=F304L	GRCh37	1	SNP	NA	NA	0	Ttc/Ctc	NM_016954.2
OSCJM-PT20-600-T	50945	TBX22	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT20-506-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	79286044	79286044	T	A	S333T	Missense_Mutation	M	2.095	getma.org/?cm=var&var=hg19,X,79286044,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBX22_HUMAN&rb=285&re=484&var=S333T	GRCh37	1	SNP	novel	.	0	Tct/Act	NM_016954.2
OSCJM-PT04-447-T	51059	FAM135B	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT04-206-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	139164859	139164859	T	A	K620M	Missense_Mutation	L	1.61	getma.org/?cm=var&var=hg19,8,139164859,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=F135B_HUMAN&rb=570&re=769&var=K620M	GRCh37	-1	SNP	NA	NA	0	aAg/aTg	NM_015912.3
OSCJM-PT40-169-T	51059	FAM135B	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT40-108-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	139160919	139160919	C	A	A1098S	Missense_Mutation	M	2.445	getma.org/?cm=var&var=hg19,8,139160919,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=F135B_HUMAN&rb=970&re=1134&var=A1098S	GRCh37	-1	SNP	novel	unknown	0	Gcc/Tcc	NM_015912.3
OSCJM-PT37-513-T	51085	MLXIPL	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT37-248-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	73020337	73020337	C	G	Q241H	Missense_Mutation	L	1.295	getma.org/?cm=var&var=hg19,7,73020337,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLXPL_HUMAN&rb=201&re=400&var=Q241H	GRCh37	-1	SNP	rs3812316	byCluster;byFrequency;by1000genomes	0.1351	caG/caC	NM_032953.2,NM_032951.2
OSCJM-PTD-578-T	51085	MLXIPL	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	73020337	73020337	C	G	Q241H	Missense_Mutation	L	1.295	getma.org/?cm=var&var=hg19,7,73020337,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=MLXPL_HUMAN&rb=201&re=400&var=Q241H	GRCh37	-1	SNP	rs3812316	byCluster;byFrequency;by1000genomes	0.1351	caG/caC	NM_032953.2,NM_032951.2
OSCJM-PT50-575-T	51101	ZC2HC1A	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT50-81-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	79609643	79609643	A	G	Y169C	Missense_Mutation	M	1.92	getma.org/?cm=var&var=hg19,8,79609643,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZC21A_HUMAN&rb=1&re=200&var=Y169C	GRCh37	1	SNP	novel	unknown	0	tAt/tGt	NM_016010.2
OSCJM-PT45-364-T	51105	PHF20L1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	133854870	133854870	G	A	R833Q	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,8,133854870,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=P20L1_HUMAN&rb=731&re=1015&var=R833Q	GRCh37	1	SNP	novel	unknown	0.00003	cGa/cAa	NM_016018.4
OSCJM-PTA-367-T	51150	SDF4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	1164118	1164118	G	A	A19V	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,1,1164118,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CAB45_HUMAN&rb=1&re=96&var=A19V	GRCh37	-1	SNP	NA	NA	0	gCt/gTt	NA
OSCJM-PT01-166-T	51170	HSD17B11	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	88312141	88312141	G	T	P28T	Missense_Mutation	M	2.97	getma.org/?cm=var&var=hg19,4,88312141,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DHB11_HUMAN&rb=1&re=36&var=P28T	GRCh37	-1	SNP	NA	NA	0	Cct/Act	NM_016245.3
OSCJM-PT32-489-T	51199	NIN	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	51259494	51259494	G	A	T124M	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,14,51259494,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NIN_HUMAN&rb=1&re=200&var=T124M	GRCh37	-1	SNP	NA	NA	0.00003	aCg/aTg	NM_016350.4,NM_182946.1
OSCJM-PT13-258-T	51199	NIN	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT13-257-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	51226956	51226956	T	C	K673R	Missense_Mutation	L	0.885	getma.org/?cm=var&var=hg19,14,51226956,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=NIN_HUMAN&rb=621&re=2088&var=K673R	GRCh37	-1	SNP	novel	unknown	0	aAa/aGa	NM_016350.4,NM_182946.1
OSCJM-PT33-288-T	51199	NIN	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	51237666	51237666	G	A	S388L	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,14,51237666,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NIN_HUMAN&rb=201&re=400&var=S388L	GRCh37	-1	SNP	novel	.	0	tCa/tTa	NM_016350.4,NM_182946.1
OSCJM-PT04-447-T	51208	CLDN18	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT04-206-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	137749947	137749947	G	T	E250D	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,3,137749947,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CLD18_HUMAN&rb=193&re=259&var=E250D	GRCh37	1	SNP	NA	NA	0	gaG/gaT	NM_016369.3
OSCJM-PTC-139-T	51253	MRPL37	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PTC-295-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	54671017	54671017	A	T	K194*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,54671017,A,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Aag/Tag	NM_016491.3
OSCJM-PTB-347-T	51289	RXFP3	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	33937797	33937797	G	A	A318T	Missense_Mutation	L	1.295	getma.org/?cm=var&var=hg19,5,33937797,G,A&fts=all	getma.org/pdb.php?prot=RL3R1_HUMAN&from=208&to=389&var=A318T	getma.org/?cm=msa&ty=f&p=RL3R1_HUMAN&rb=208&re=389&var=A318T	GRCh37	1	SNP	NA	NA	0	Gcc/Acc	NM_016568.3
OSCJM-PT46-394-T	51290	ERGIC2	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	29496154	29496154	T	A	D296V	Missense_Mutation	H	3.505	getma.org/?cm=var&var=hg19,12,29496154,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ERGI2_HUMAN&rb=153&re=333&var=D296V	GRCh37	-1	SNP	novel	unknown	0	gAt/gTt	NM_016570.2
OSCJM-PT03-388-T	51314	NME8	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	37924040	37924040	A	T	N377I	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,7,37924040,A,T&fts=all	getma.org/pdb.php?prot=TXND3_HUMAN&from=316&to=452&var=N377I	getma.org/?cm=msa&ty=f&p=TXND3_HUMAN&rb=316&re=452&var=N377I	GRCh37	1	SNP	novel	unknown	0	aAc/aTc	NM_016616.4
OSCJM-PT48-530-T	51329	ARL6IP4	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	123466229	123466229	C	T	S214L	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,12,123466229,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=AR6P4_HUMAN&rb=129&re=359&var=S214L	GRCh37	1	SNP	novel	unknown	0	tCg/tTg	NM_001002251.2,NM_018694.3,NM_001278378.1
OSCJM-PT46-394-T	51338	MS4A4A	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	60059735	60059735	G	A	E27K	Missense_Mutation	L	1.75	getma.org/?cm=var&var=hg19,11,60059735,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=M4A4A_HUMAN&rb=1&re=64&var=E27K	GRCh37	1	SNP	novel	unknown	0	Gaa/Aaa	NM_148975.2
OSCJM-PT49-537-T	51338	MS4A4A	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	60059843	60059843	C	G	P63A	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,11,60059843,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=M4A4A_HUMAN&rb=1&re=64&var=P63A	GRCh37	1	SNP	novel	unknown	0	Ccc/Gcc	NM_148975.2
OSCJM-PT18-392-T	51340	CRNKL1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	20028543	20028543	C	T	G324E	Missense_Mutation	L	1.58	getma.org/?cm=var&var=hg19,20,20028543,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CRNL1_HUMAN&rb=289&re=356&var=G324E	GRCh37	-1	SNP	novel	.	0	gGa/gAa	NM_016652.5
OSCJM-PT46-394-T	51350	KRT76	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					12	53170624	53170624	A	G	F151S	Missense_Mutation	L	1.15	getma.org/?cm=var&var=hg19,12,53170624,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=K22O_HUMAN&rb=1&re=181&var=F151S	GRCh37	-1	SNP	novel	unknown	0	tTt/tCt	NM_015848.4
OSCJM-PT40-169-T	51361	HOOK1	hgsc.bcm.edu	Illumina	Somatic	T	G	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	60314747	60314747	T	G	V378V	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	gtT/gtG	NM_015888.4
OSCJM-PT03-388-T	51366	UBR5	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	103269862	103269862	G	A	L2729F	Missense_Mutation	L	1.71	getma.org/?cm=var&var=hg19,8,103269862,G,A&fts=all	getma.org/pdb.php?prot=UBR5_HUMAN&from=2497&to=2799&var=L2729F	getma.org/?cm=msa&ty=f&p=UBR5_HUMAN&rb=2497&re=2799&var=L2729F	GRCh37	-1	SNP	NA	NA	0	Ctt/Ttt	NM_015902.5
OSCJM-PT03-388-T	51427	ZNF107	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	64168238	64168238	C	T	T519I	Missense_Mutation	M	2.285	getma.org/?cm=var&var=hg19,7,64168238,C,T&fts=all	getma.org/pdb.php?prot=ZN107_HUMAN&from=508&to=593&var=T519I	getma.org/?cm=msa&ty=f&p=ZN107_HUMAN&rb=508&re=593&var=T519I	GRCh37	1	SNP	novel	unknown	0	aCt/aTt	NM_001013746.1,NM_001282360.1,NM_001282359.1
OSCJM-PT45-364-T	51429	SNX9	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	158353237	158353237	G	T	K433N	Missense_Mutation	M	2.525	getma.org/?cm=var&var=hg19,6,158353237,G,T&fts=all	getma.org/pdb.php?prot=SNX9_HUMAN&from=358&to=593&var=K433N	getma.org/?cm=msa&ty=f&p=SNX9_HUMAN&rb=358&re=593&var=K433N	GRCh37	1	SNP	novel	unknown	0	aaG/aaT	NM_016224.4
OSCJM-PT45-364-T	51429	SNX9	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	158353238	158353238	G	T	E434*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,6,158353238,G,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0	Gaa/Taa	NM_016224.4
OSCJM-PT48-530-T	51447	IP6K2	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT48-60-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	48725939	48725939	C	G	E350Q	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,3,48725939,C,G&fts=all	getma.org/pdb.php?prot=IP6K2_HUMAN&from=203&to=418&var=E350Q	getma.org/?cm=msa&ty=f&p=IP6K2_HUMAN&rb=203&re=418&var=E350Q	GRCh37	-1	SNP	novel	unknown	0	Gag/Cag	NM_016291.3,NM_001005909.2
OSCJM-PT40-169-T	51531	TRMO	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	100672670	100672670	T	C	H213R	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,9,100672670,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=NAP1_HUMAN&rb=166&re=365&var=H213R	GRCh37	-1	SNP	NA	NA	0	cAt/cGt	NM_016481.3
OSCJM-PT37-513-T	51535	PPHLN1	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT37-248-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	42781287	42781287	A	G	T200A	Missense_Mutation	M	2.135	getma.org/?cm=var&var=hg19,12,42781287,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PPHLN_HUMAN&rb=1&re=200&var=T200A	GRCh37	1	SNP	novel	.	0.00001	Aca/Gca	NM_016488.6
OSCJM-PT37-513-T	51571	FAM49B	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					8	130861514	130861514	G	A	A272V	Missense_Mutation	L	1.87	getma.org/?cm=var&var=hg19,8,130861514,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=FA49B_HUMAN&rb=16&re=320&var=A272V	GRCh37	-1	SNP	novel	.	0	gCa/gTa	NA
OSCJM-PT03-388-T	51594	NBAS	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	15555694	15555694	C	A	K971N	Missense_Mutation	M	2.095	getma.org/?cm=var&var=hg19,2,15555694,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NBAS_HUMAN&rb=725&re=1379&var=K971N	GRCh37	-1	SNP	novel	unknown	0	aaG/aaT	NM_015909.3
OSCJM-PT25-327-T	51594	NBAS	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT25-74-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	15415775	15415775	T	A	K1853*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,15415775,T,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	.	0	Aag/Tag	NM_015909.3
OSCJM-PT33-288-T	51594	NBAS	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	15470795	15470795	G	A	T1425I	Missense_Mutation	M	2.36	getma.org/?cm=var&var=hg19,2,15470795,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=NBAS_HUMAN&rb=1380&re=1579&var=T1425I	GRCh37	-1	SNP	novel	.	0	aCc/aTc	NM_015909.3
OSCJM-PT40-169-T	51599	LSR	hgsc.bcm.edu	Illumina	Somatic	-	GGA	OSCJM-PT40-108-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					19	35758275	35758276	NA	GGA	R519dup	In_Frame_Ins	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	NA	INS	rs79703261	[Not Available]	0.7326	ggg/gGGAgg	NM_205834.3
OSCJM-PT47-449-T	51599	LSR	hgsc.bcm.edu	Illumina	Somatic	-	GGA	OSCJM-PT47-225-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					19	35758275	35758276	NA	GGA	R519dup	In_Frame_Ins	[Not Available]	1.4013e-45	[Not Available]	[Not Available]	[Not Available]	GRCh37	NA	INS	rs79703261	[Not Available]	0.7326	ggg/gGGAgg	NM_205834.3
OSCJM-PT01-166-T	51599	LSR	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	35757427	35757427	G	A	S363N	Missense_Mutation	N	-0.69	getma.org/?cm=var&var=hg19,19,35757427,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=LSR_HUMAN&rb=308&re=507&var=S363N	GRCh37	1	SNP	rs34259399	byFrequency	0.1558	aGt/aAt	NM_205834.3
OSCJM-PTA-367-T	51629	SLC25A39	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	42397759	42397759	G	A	R283C	Missense_Mutation	M	2.42	getma.org/?cm=var&var=hg19,17,42397759,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=S2539_HUMAN&rb=251&re=352&var=R283C	GRCh37	-1	SNP	NA	NA	0	Cgc/Tgc	NM_001143780.1
OSCJM-PTD-578-T	51665	ASB1	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	239344474	239344474	A	G	D105G	Missense_Mutation	M	2.255	getma.org/?cm=var&var=hg19,2,239344474,A,G&fts=all	getma.org/pdb.php?prot=ASB1_HUMAN&from=82&to=174&var=D105G	getma.org/?cm=msa&ty=f&p=ASB1_HUMAN&rb=82&re=174&var=D105G	GRCh37	1	SNP	NA	NA	0	gAt/gGt	NM_001040445.1
OSCJM-PT50-575-T	51667	NUB1	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	151057308	151057308	C	G	L283V	Missense_Mutation	M	2.65	getma.org/?cm=var&var=hg19,7,151057308,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=NUB1_HUMAN&rb=201&re=374&var=L259V	GRCh37	1	SNP	novel	unknown	0	Ctg/Gtg	NA
OSCJM-PT49-537-T	51701	NLK	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	26488289	26488289	C	T	R250*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,17,26488289,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_016231.4
OSCJM-PT50-575-T	51729	WBP11	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	14944146	14944146	C	A	M324I	Missense_Mutation	N	0.49	getma.org/?cm=var&var=hg19,12,14944146,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=WBP11_HUMAN&rb=295&re=494&var=M324I	GRCh37	-1	SNP	novel	unknown	0	atG/atT	NM_016312.2
OSCJM-PT10-325-T	51761	ATP8A2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	26114507	26114507	C	T	T211M	Missense_Mutation	H	4.28	getma.org/?cm=var&var=hg19,13,26114507,C,T&fts=all	getma.org/pdb.php?prot=AT8A2_HUMAN&from=83&to=356&var=T171M	getma.org/?cm=msa&ty=f&p=AT8A2_HUMAN&rb=83&re=356&var=T171M	GRCh37	1	SNP	novel	unknown	0.00003	aCg/aTg	NM_016529.4
OSCJM-PT45-364-T	51763	INPP5K	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT45-246-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					17	1412503	1412503	C	T	G175R	Missense_Mutation	L	0.85	getma.org/?cm=var&var=hg19,17,1412503,C,T&fts=all	getma.org/pdb.php?prot=INP5K_HUMAN&from=19&to=311&var=G175R	getma.org/?cm=msa&ty=f&p=INP5K_HUMAN&rb=19&re=311&var=G175R	GRCh37	-1	SNP	novel	unknown	0.00001	Ggg/Agg	NM_016532.3
OSCJM-PT10-325-T	51780	KDM3B	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	137766095	137766095	C	T	P1684L	Missense_Mutation	M	3.38	getma.org/?cm=var&var=hg19,5,137766095,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=KDM3B_HUMAN&rb=1594&re=1704&var=P1684L	GRCh37	1	SNP	NA	NA	0	cCt/cTt	NM_016604.3
OSCJM-PT01-166-T	51780	KDM3B	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	137762666	137762666	C	T	R1472*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,5,137762666,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_016604.3
OSCJM-PT12-478-T	51805	COQ3	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT12-103-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	99823896	99823896	C	G	D217H	Missense_Mutation	H	3.95	getma.org/?cm=var&var=hg19,6,99823896,C,G&fts=all	getma.org/pdb.php?prot=COQ3_HUMAN&from=151&to=250&var=D217H	getma.org/?cm=msa&ty=f&p=COQ3_HUMAN&rb=151&re=250&var=D217H	GRCh37	-1	SNP	NA	NA	0	Gat/Cat	NM_017421.3
OSCJM-PT47-449-T	51806	CALML5	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT47-225-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	5541181	5541181	T	C	K74R	Missense_Mutation	N	0.085	getma.org/?cm=var&var=hg19,10,5541181,T,C&fts=all	getma.org/pdb.php?prot=CALL5_HUMAN&from=24&to=76&var=K74R	getma.org/?cm=msa&ty=f&p=CALL5_HUMAN&rb=24&re=76&var=K74R	GRCh37	-1	SNP	rs10904516	by2Hit2Allele	0.3335	aAg/aGg	NM_017422.4
OSCJM-PT47-449-T	51808	PHAX	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT47-225-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	125960487	125960487	C	T	A379V	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,5,125960487,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PHAX_HUMAN&rb=316&re=394&var=A379V	GRCh37	1	SNP	novel	unknown	0	gCa/gTa	NM_032177.3
OSCJM-PTD-578-T	53353	LRP1B	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	141081531	141081531	C	A	E4149*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,2,141081531,C,A&fts=all	NA	NA	GRCh37	-1	SNP	NA	NA	0	Gag/Tag	NM_018557.2
OSCJM-PT07-43-T	53353	LRP1B	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	141946119	141946119	C	T	R295Q	Missense_Mutation	L	1.43	getma.org/?cm=var&var=hg19,2,141946119,C,T&fts=all	getma.org/pdb.php?prot=LRP1B_HUMAN&from=295&to=335&var=R295Q	getma.org/?cm=msa&ty=f&p=LRP1B_HUMAN&rb=295&re=335&var=R295Q	GRCh37	-1	SNP	NA	NA	0.00004	cGa/cAa	NM_018557.2
OSCJM-PT03-388-T	53353	LRP1B	hgsc.bcm.edu	SOLID	Somatic	GTT	-	OSCJM-PT03-66-N	GTT	GTT	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					2	141143532	141143534	GTT	-	N3487del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	.	0	AAC/-	NM_018557.2
OSCJM-PT49-537-T	53373	TPCN1	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT49-585-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	113664695	113664695	T	A	L13Q	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,12,113664695,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TPC1_HUMAN&rb=1&re=141&var=L13Q	GRCh37	1	SNP	novel	unknown	0	cTg/cAg	NM_017901.4
OSCJM-PT38-234-T	53827	FXYD5	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT38-446-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	35657055	35657055	G	C	E131D	Missense_Mutation	L	1.55	getma.org/?cm=var&var=hg19,19,35657055,G,C&fts=all	getma.org/pdb.php?prot=FXYD5_HUMAN&from=129&to=176&var=E131D	getma.org/?cm=msa&ty=f&p=FXYD5_HUMAN&rb=129&re=176&var=E131D	GRCh37	1	SNP	novel	.	0	gaG/gaC	NA
OSCJM-PT18-392-T	53904	MYO3A	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	26432468	26432468	G	A	G785D	Missense_Mutation	H	4.535	getma.org/?cm=var&var=hg19,10,26432468,G,A&fts=all	getma.org/pdb.php?prot=MYO3A_HUMAN&from=340&to=1041&var=G785D	getma.org/?cm=msa&ty=f&p=MYO3A_HUMAN&rb=340&re=1041&var=G785D	GRCh37	1	SNP	novel	.	0	gGt/gAt	NM_017433.4
OSCJM-PT03-388-T	53942	CNTN5	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	99931943	99931943	G	A	X327_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	NA	NA	0	NA	NM_014361.3
OSCJM-PT01-166-T	53942	CNTN5	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	99690283	99690283	A	G	K22E	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,11,99690283,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNTN5_HUMAN&rb=1&re=98&var=K22E	GRCh37	1	SNP	NA	NA	0.00003	Aaa/Gaa	NM_014361.3
OSCJM-PT20-600-T	54014	BRWD1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					21	40608628	40608628	G	A	R887*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,21,40608628,G,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Cga/Tga	NM_018963.4
OSCJM-PT49-537-T	54101	RIPK4	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					21	43162104	43162104	C	T	G465R	Missense_Mutation	M	2.33	getma.org/?cm=var&var=hg19,21,43162104,C,T&fts=all	getma.org/pdb.php?prot=RIPK4_HUMAN&from=458&to=549&var=G465R	getma.org/?cm=msa&ty=f&p=RIPK4_HUMAN&rb=458&re=549&var=G465R	GRCh37	-1	SNP	novel	NA	0.00002	Ggg/Agg	NA
OSCJM-PT14-353-T	54101	RIPK4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT14-504-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					21	43171386	43171386	G	A	A165V	Missense_Mutation	M	2.115	getma.org/?cm=var&var=hg19,21,43171386,G,A&fts=all	getma.org/pdb.php?prot=RIPK4_HUMAN&from=22&to=282&var=A165V	getma.org/?cm=msa&ty=f&p=RIPK4_HUMAN&rb=22&re=282&var=A165V	GRCh37	-1	SNP	novel	.	0	gCc/gTc	NA
OSCJM-PT33-288-T	54101	RIPK4	hgsc.bcm.edu	SOLID	Somatic	-	A	OSCJM-PT33-571-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					21	43171264	43171265	-	A	V206Cfs*21	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	INS	novel	.	0	-/T	NA
OSCJM-PT20-600-T	54346	UNC93A	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					6	167728791	167728791	G	A	V409I	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,6,167728791,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=UN93A_HUMAN&rb=369&re=457&var=V409I	GRCh37	1	SNP	rs7739897	byCluster;byFrequency;byHapMap	0.0697	Gtc/Atc	NM_018974.3
OSCJM-PT33-288-T	54407	SLC38A2	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT33-571-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	46756114	46756114	T	C	I459V	Missense_Mutation	M	1.93	getma.org/?cm=var&var=hg19,12,46756114,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=S38A2_HUMAN&rb=69&re=495&var=I459V	GRCh37	-1	SNP	novel	.	0	Atc/Gtc	NM_018976.4
OSCJM-PT48-530-T	54431	DNAJC10	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT48-60-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	183582938	183582938	T	A	V42E	Missense_Mutation	H	4.185	getma.org/?cm=var&var=hg19,2,183582938,T,A&fts=all	getma.org/pdb.php?prot=DJC10_HUMAN&from=35&to=97&var=V42E	getma.org/?cm=msa&ty=f&p=DJC10_HUMAN&rb=35&re=97&var=V42E	GRCh37	1	SNP	novel	unknown	0	gTg/gAg	NM_018981.2,NM_001271581.1
OSCJM-PT10-325-T	54439	RBM27	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT10-70-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	145609354	145609354	G	A	R157H	Missense_Mutation	L	1.795	getma.org/?cm=var&var=hg19,5,145609354,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RBM27_HUMAN&rb=78&re=273&var=R157H	GRCh37	1	SNP	novel	NA	0.00004	cGt/cAt	NM_018989.1
OSCJM-PT32-489-T	54453	RIN2	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	19981537	19981537	G	T	G931V	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,20,19981537,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=RIN2_HUMAN&rb=849&re=895&var=G882V	GRCh37	1	SNP	NA	NA	0	gGc/gTc	NM_018993.3,NM_001242581.1
OSCJM-PTD-578-T	54454	ATAD2B	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	23977087	23977087	G	C	R1433G	Missense_Mutation	L	1.75	getma.org/?cm=var&var=hg19,2,23977087,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATD2B_HUMAN&rb=1356&re=1456&var=R1433G	GRCh37	-1	SNP	novel	unknown	0	Cgt/Ggt	NM_001242338.1,NM_017552.2
OSCJM-PTD-578-T	54454	ATAD2B	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTD-439-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	24021115	24021115	C	T	E845K	Missense_Mutation	M	1.905	getma.org/?cm=var&var=hg19,2,24021115,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATD2B_HUMAN&rb=773&re=966&var=E845K	GRCh37	-1	SNP	novel	unknown	0	Gaa/Aaa	NM_001242338.1,NM_017552.2
OSCJM-PT45-364-T	54456	MOV10L1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT45-246-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					22	50537929	50537929	G	T	D114Y	Missense_Mutation	M	2.28	getma.org/?cm=var&var=hg19,22,50537929,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=M10L1_HUMAN&rb=1&re=687&var=D114Y	GRCh37	1	SNP	novel	unknown	0	Gac/Tac	NM_018995.2
OSCJM-PT03-388-T	54461	FBXW5	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					9	139836049	139836049	A	G	L395P	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,9,139836049,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=FBXW5_HUMAN&rb=321&re=502&var=L395P	GRCh37	-1	SNP	novel	unknown	0	cTg/cCg	NM_018998.3
OSCJM-PT03-388-T	54461	FBXW5	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	139836654	139836654	C	T	A314T	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,9,139836654,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=FBXW5_HUMAN&rb=121&re=320&var=A314T	GRCh37	-1	SNP	novel	unknown	0	Gcg/Acg	NM_018998.3
OSCJM-PT03-388-T	54464	XRN1	hgsc.bcm.edu	Cross	Somatic	T	C	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					3	142144150	142144150	T	C	I181V	Missense_Mutation	M	2.84	getma.org/?cm=var&var=hg19,3,142144150,T,C&fts=all	getma.org/pdb.php?prot=XRN1_HUMAN&from=1&to=228&var=I181V	getma.org/?cm=msa&ty=f&p=XRN1_HUMAN&rb=1&re=228&var=I181V	GRCh37	-1	SNP	novel	unknown	0	Atc/Gtc	NM_019001.3
OSCJM-PT07-43-T	54482	TRMT13	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	100598746	100598746	C	A	P8T	Missense_Mutation	N	-0.41	getma.org/?cm=var&var=hg19,1,100598746,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TRM13_HUMAN&rb=1&re=45&var=P8T	GRCh37	1	SNP	NA	NA	0	Ccg/Acg	NM_019083.2
OSCJM-PT32-489-T	54502	RBM47	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	40428010	40428010	T	C	M565V	Missense_Mutation	N	-0.695	getma.org/?cm=var&var=hg19,4,40428010,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=RBM47_HUMAN&rb=513&re=593&var=M565V	GRCh37	-1	SNP	rs278981	by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop	0.7447	Atg/Gtg	NM_001098634.1
OSCJM-PT03-388-T	54507	ADAMTSL4	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	150527937	150527937	C	T	R423W	Missense_Mutation	M	2.365	getma.org/?cm=var&var=hg19,1,150527937,C,T&fts=all	getma.org/pdb.php?prot=ATL4_HUMAN&from=380&to=484&var=R423W	getma.org/?cm=msa&ty=f&p=ATL4_HUMAN&rb=380&re=484&var=R423W	GRCh37	1	SNP	novel	.	0.00002	Cgg/Tgg	NM_019032.4
OSCJM-PT01-166-T	54521	WDR44	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	117575441	117575441	C	G	I695M	Missense_Mutation	M	3.475	getma.org/?cm=var&var=hg19,X,117575441,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=WDR44_HUMAN&rb=677&re=781&var=I695M	GRCh37	1	SNP	NA	NA	0	atC/atG	NM_019045.4
OSCJM-PT33-288-T	54521	WDR44	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	117570687	117570687	C	T	S625L	Missense_Mutation	H	4.27	getma.org/?cm=var&var=hg19,X,117570687,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=WDR44_HUMAN&rb=598&re=634&var=S625L	GRCh37	1	SNP	novel	.	0	tCa/tTa	NM_019045.4
OSCJM-PTA-367-T	54532	USP53	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	120213723	120213723	C	T	S860F	Missense_Mutation	M	1.905	getma.org/?cm=var&var=hg19,4,120213723,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=UBP53_HUMAN&rb=776&re=975&var=S860F	GRCh37	1	SNP	NA	NA	0	tCt/tTt	NM_019050.2
OSCJM-PT37-513-T	54542	RC3H2	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT37-248-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	125616529	125616529	T	A	T973S	Missense_Mutation	N	-0.805	getma.org/?cm=var&var=hg19,9,125616529,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RC3H2_HUMAN&rb=838&re=1037&var=T973S	GRCh37	-1	SNP	novel	.	0	Act/Tct	NM_001100588.1
OSCJM-PT46-394-T	54549	SDK2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	71410896	71410896	G	A	P791S	Missense_Mutation	H	3.715	getma.org/?cm=var&var=hg19,17,71410896,G,A&fts=all	getma.org/pdb.php?prot=SDK2_HUMAN&from=791&to=890&var=P791S	getma.org/?cm=msa&ty=f&p=SDK2_HUMAN&rb=791&re=890&var=P791S	GRCh37	-1	SNP	NA	NA	0	Ccc/Tcc	NM_001144952.1
OSCJM-PT47-449-T	54577	UGT1A7	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT47-225-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	234590720	234590720	A	G	E46G	Missense_Mutation	M	3.085	getma.org/?cm=var&var=hg19,2,234590720,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=UD17_HUMAN&rb=26&re=521&var=E46G	GRCh37	1	SNP	novel	unknown	0	gAg/gGg	NM_019077.2
OSCJM-PT19-481-T	54596	L1TD1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT19-3-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	62673225	62673225	G	A	V309M	Missense_Mutation	N	-1.04	getma.org/?cm=var&var=hg19,1,62673225,G,A&fts=all	getma.org/pdb.php?prot=LITD1_HUMAN&from=214&to=337&var=V309M	getma.org/?cm=msa&ty=f&p=LITD1_HUMAN&rb=214&re=337&var=V309M	GRCh37	1	SNP	rs7533274	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.5666	Gtg/Atg	NM_019079.4,NM_001164835.1
OSCJM-PT46-394-T	54664	TMEM106B	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT46-220-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	12269429	12269429	C	T	P189L	Missense_Mutation	M	2.815	getma.org/?cm=var&var=hg19,7,12269429,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=T106B_HUMAN&rb=14&re=258&var=P189L	GRCh37	1	SNP	novel	unknown	0	cCa/cTa	NM_018374.3
OSCJM-PT49-537-T	54716	SLC6A20	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	45800487	45800487	C	A	A588S	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,3,45800487,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=S6A20_HUMAN&rb=552&re=592&var=A588S	GRCh37	-1	SNP	novel	unknown	0	Gca/Tca	NM_020208.3
OSCJM-PT07-43-T	54749	EPDR1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	37988572	37988572	G	A	E134K	Missense_Mutation	M	2.125	getma.org/?cm=var&var=hg19,7,37988572,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=EPDR1_HUMAN&rb=79&re=210&var=E134K	GRCh37	1	SNP	NA	NA	0	Gaa/Aaa	NM_017549.4
OSCJM-PT03-388-T	54768	HYDIN	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	71163719	71163719	C	T	D351N	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,16,71163719,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=HYDIN_HUMAN&rb=1&re=1902&var=D351N	GRCh37	-1	SNP	novel	unknown	0	Gat/Aat	NM_001270974.1
OSCJM-PT14-353-T	54768	HYDIN	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT14-504-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	70866918	70866918	C	G	E4578Q	Missense_Mutation	L	1.52	getma.org/?cm=var&var=hg19,16,70866918,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=HYDIN_HUMAN&rb=2724&re=4636&var=E4578Q	GRCh37	-1	SNP	novel	unknown	0	Gaa/Caa	NM_001270974.1
OSCJM-PT33-288-T	54768	HYDIN	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT33-571-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	70954691	70954691	T	C	K2530E	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,16,70954691,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=HYDIN_HUMAN&rb=2512&re=2560&var=K2530E	GRCh37	-1	SNP	rs1798528	by2Hit2Allele;byCluster	0	Aag/Gag	NM_001270974.1
OSCJM-PTB-347-T	54768	HYDIN	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTB-173-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	70954726	70954726	T	C	K2518R	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,16,70954726,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=HYDIN_HUMAN&rb=2512&re=2560&var=K2518R	GRCh37	-1	SNP	novel	unknown	0	aAg/aGg	NM_001270974.1
OSCJM-PT47-449-T	54768	HYDIN	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT47-225-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					16	70954726	70954726	T	C	K2518R	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,16,70954726,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=HYDIN_HUMAN&rb=2512&re=2560&var=K2518R	GRCh37	-1	SNP	novel	unknown	0	aAg/aGg	NM_001270974.1
OSCJM-PT49-537-T	54768	HYDIN	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	71026109	71026109	C	T	V1217M	Missense_Mutation	N	0.41	getma.org/?cm=var&var=hg19,16,71026109,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=HYDIN_HUMAN&rb=1&re=1902&var=V1217M	GRCh37	-1	SNP	novel	unknown	0.00001	Gtg/Atg	NM_001270974.1
OSCJM-PT07-43-T	54776	PPP1R12C	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	55605735	55605735	C	T	R554H	Missense_Mutation	M	2.285	getma.org/?cm=var&var=hg19,19,55605735,C,T&fts=all	getma.org/pdb.php?prot=PP12C_HUMAN&from=298&to=687&var=R554H	getma.org/?cm=msa&ty=f&p=PP12C_HUMAN&rb=298&re=687&var=R554H	GRCh37	-1	SNP	NA	NA	0	cGc/cAc	NM_017607.3,NM_001271618.1
OSCJM-PTD-578-T	54790	TET2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	106196870	106196870	G	A	G1735R	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,4,106196870,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TET2_HUMAN&rb=1290&re=1905&var=G1735R	GRCh37	1	SNP	novel	unknown	0	Gga/Aga	NM_001127208.2
OSCJM-PT18-392-T	54806	AHI1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	135787109	135787109	C	G	E198Q	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,6,135787109,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=AHI1_HUMAN&rb=5&re=334&var=E198Q	GRCh37	-1	SNP	novel	.	0	Gaa/Caa	NM_001134831.1
OSCJM-PT18-392-T	54806	AHI1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	135787171	135787171	C	G	R177T	Missense_Mutation	L	1.525	getma.org/?cm=var&var=hg19,6,135787171,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=AHI1_HUMAN&rb=5&re=334&var=R177T	GRCh37	-1	SNP	novel	.	0	aGa/aCa	NM_001134831.1
OSCJM-PT32-489-T	54812	AFTPH	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT32-30-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	64780007	64780007	C	T	H467Y	Missense_Mutation	L	1.79	getma.org/?cm=var&var=hg19,2,64780007,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=AFTIN_HUMAN&rb=251&re=469&var=H467Y	GRCh37	1	SNP	NA	NA	0	Cac/Tac	NM_203437.3
OSCJM-PT03-388-T	54821	ERCC6L	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	71427521	71427521	C	T	D366N	Missense_Mutation	M	2.605	getma.org/?cm=var&var=hg19,X,71427521,C,T&fts=all	getma.org/pdb.php?prot=ERC6L_HUMAN&from=99&to=417&var=D366N	getma.org/?cm=msa&ty=f&p=ERC6L_HUMAN&rb=99&re=417&var=D366N	GRCh37	-1	SNP	novel	unknown	0	Gat/Aat	NM_017669.2
OSCJM-PT18-392-T	54839	LRRC49	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT18-570-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	71276493	71276493	G	A	V356I	Missense_Mutation	L	1.39	getma.org/?cm=var&var=hg19,15,71276493,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=LRC49_HUMAN&rb=311&re=684&var=V356I	GRCh37	1	SNP	novel	.	0	Gta/Ata	NM_001199017.1,NM_017691.3
OSCJM-PT13-258-T	54854	FAM83E	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	49113222	49113222	G	T	F223L	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,19,49113222,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=FA83E_HUMAN&rb=9&re=291&var=F223L	GRCh37	-1	SNP	novel	unknown	0	ttC/ttA	NM_017708.3
OSCJM-PT33-288-T	54856	GON4L	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PT33-571-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	155792130	155792130	C	G	D279H	Missense_Mutation	L	1.7	getma.org/?cm=var&var=hg19,1,155792130,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=GON4L_HUMAN&rb=260&re=1579&var=D279H	GRCh37	-1	SNP	novel	.	0	Gat/Cat	NM_001037533.1,NM_001282858.1,NM_001282856.1,NM_001282860.1
OSCJM-PT14-353-T	54862	CC2D1A	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT14-504-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	14031415	14031415	T	C	S468P	Missense_Mutation	N	-0.205	getma.org/?cm=var&var=hg19,19,14031415,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=C2D1A_HUMAN&rb=401&re=600&var=S468P	GRCh37	1	SNP	novel	unknown	0	Tca/Cca	NM_017721.4
OSCJM-PT41-180-T	54875	CNTLN	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	17394567	17394567	G	T	E705D	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,9,17394567,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CNTLN_HUMAN&rb=532&re=741&var=E705D	GRCh37	1	SNP	novel	unknown	0	gaG/gaT	NA
OSCJM-PT18-392-T	54885	TBC1D8B	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	106084094	106084094	C	T	P567S	Missense_Mutation	M	2.34	getma.org/?cm=var&var=hg19,X,106084094,C,T&fts=all	getma.org/pdb.php?prot=TBC8B_HUMAN&from=490&to=694&var=P567S	getma.org/?cm=msa&ty=f&p=TBC8B_HUMAN&rb=490&re=694&var=P567S	GRCh37	1	SNP	novel	.	0	Ccc/Tcc	NM_017752.2
OSCJM-PT28-298-T	54897	CASZ1	hgsc.bcm.edu	SOLID	Somatic	C	A	OSCJM-PT28-437-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	10710790	10710790	C	A	V947F	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,1,10710790,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CASZ1_HUMAN&rb=801&re=1000&var=V947F	GRCh37	-1	SNP	novel	.	0	Gtc/Ttc	NM_001079843.2
OSCJM-PT03-388-T	54932	EXD3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					9	140201493	140201493	C	T	R847H	Missense_Mutation	L	1.395	getma.org/?cm=var&var=hg19,9,140201493,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MUT7_HUMAN&rb=757&re=876&var=R847H	GRCh37	-1	SNP	novel	unknown	0.00003	cGt/cAt	NM_017820.3
OSCJM-PT47-449-T	55002	TMCO3	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT47-225-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					13	114202620	114202620	T	C	F591F	Splice_Region	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	ttT/ttC	NM_017905.4
OSCJM-PT35-37-T	55004	LAMTOR1	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT35-339-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	71809888	71809888	A	T	S69T	Missense_Mutation	M	2.135	getma.org/?cm=var&var=hg19,11,71809888,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=LTOR1_HUMAN&rb=1&re=161&var=S69T	GRCh37	-1	SNP	novel	unknown	0	Tct/Act	NM_017907.2
OSCJM-PT03-388-T	55008	HERC6	hgsc.bcm.edu	Illumina	Somatic	-	G	OSCJM-PT03-66-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					4	89300245	89300246	-	G	A60Rfs*19	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	rs11392030	unknown	0	agg/aGgg	NM_017912.3
OSCJM-PT13-258-T	55022	PID1	hgsc.bcm.edu	Cross	Somatic	C	A	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					2	229890685	229890685	C	A	R139L	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,2,229890685,C,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCLI1_HUMAN&rb=92&re=229&var=R139L	GRCh37	-1	SNP	novel	unknown	0	cGg/cTg	NA
OSCJM-PT03-388-T	55023	PHIP	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					6	79675678	79675678	G	C	Q1101E	Missense_Mutation	M	2.425	getma.org/?cm=var&var=hg19,6,79675678,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=PHIP_HUMAN&rb=1096&re=1164&var=Q1101E	GRCh37	-1	SNP	NA	NA	0	Caa/Gaa	NM_017934.5
OSCJM-PT33-288-T	55055	ZWILCH	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					15	66811312	66811312	G	A	R139K	Missense_Mutation	L	1.825	getma.org/?cm=var&var=hg19,15,66811312,G,A&fts=all	getma.org/pdb.php?prot=ZWILC_HUMAN&from=31&to=587&var=R139K	getma.org/?cm=msa&ty=f&p=ZWILC_HUMAN&rb=31&re=587&var=R139K	GRCh37	1	SNP	novel	.	0	aGa/aAa	NM_017975.3,NM_001287823.1
OSCJM-PT25-327-T	55063	ZCWPW1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT25-74-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	99998830	99998830	G	A	A585V	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,7,99998830,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZCPW1_HUMAN&rb=563&re=648&var=A585V	GRCh37	-1	SNP	novel	.	0.00001	gCg/gTg	NM_017984.4
OSCJM-PT49-537-T	55068	ENOX1	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	43930220	43930220	G	C	Q220E	Missense_Mutation	M	2.3	getma.org/?cm=var&var=hg19,13,43930220,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ENOX1_HUMAN&rb=142&re=221&var=Q220E	GRCh37	-1	SNP	novel	unknown	0	Cag/Gag	NM_017993.3,NM_001242863.1
OSCJM-PT03-388-T	55072	RNF31	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT03-66-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	24617624	24617624	T	A	X165_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	unknown	0	NA	NM_017999.4
OSCJM-PT32-489-T	55081	IFT57	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	107881493	107881493	A	C	V374G	Missense_Mutation	M	2.85	getma.org/?cm=var&var=hg19,3,107881493,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=IFT57_HUMAN&rb=44&re=402&var=V374G	GRCh37	-1	SNP	novel	.	0	gTg/gGg	NM_018010.3
OSCJM-PTC-139-T	55102	ATG2B	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PTC-295-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	96829184	96829184	C	G	G44R	Missense_Mutation	M	2.485	getma.org/?cm=var&var=hg19,14,96829184,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ATG2B_HUMAN&rb=11&re=129&var=G44R	GRCh37	-1	SNP	novel	unknown	0.00001	Ggg/Cgg	NM_018036.5
OSCJM-PT03-388-T	55109	AGGF1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	76335522	76335522	C	T	S283F	Missense_Mutation	N	0.49	getma.org/?cm=var&var=hg19,5,76335522,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=AGGF1_HUMAN&rb=201&re=400&var=S283F	GRCh37	1	SNP	novel	unknown	0	tCt/tTt	NM_018046.4
OSCJM-PT32-489-T	55130	ARMC4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	28196653	28196653	G	A	P850L	Missense_Mutation	M	1.955	getma.org/?cm=var&var=hg19,10,28196653,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ARMC4_HUMAN&rb=845&re=922&var=P850L	GRCh37	-1	SNP	NA	NA	0	cCt/cTt	NM_018076.2
OSCJM-PT22-229-T	55142	HAUS2	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT22-321-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					15	42850453	42850453	C	T	Q51*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,15,42850453,C,T&fts=all	NA	NA	GRCh37	1	SNP	novel	.	0.00001	Cag/Tag	NM_018097.2
OSCJM-PT50-575-T	55163	PNPO	hgsc.bcm.edu	Illumina	Somatic	C	G	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	46023713	46023713	C	G	L191V	Missense_Mutation	L	1.405	getma.org/?cm=var&var=hg19,17,46023713,C,G&fts=all	getma.org/pdb.php?prot=PNPO_HUMAN&from=154&to=205&var=L191V	getma.org/?cm=msa&ty=f&p=PNPO_HUMAN&rb=154&re=205&var=L191V	GRCh37	1	SNP	novel	unknown	0	Ctg/Gtg	NM_018129.3
OSCJM-PTB-347-T	55171	TBCCD1	hgsc.bcm.edu	Cross	Somatic	T	A	OSCJM-PTB-173-N	T	T	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					3	186272187	186272187	T	A	Y467F	Missense_Mutation	L	1.395	getma.org/?cm=var&var=hg19,3,186272187,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBCC1_HUMAN&rb=447&re=557&var=Y467F	GRCh37	-1	SNP	novel	unknown	0	tAt/tTt	NM_018138.3
OSCJM-PTD-578-T	55182	RNF220	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	44878151	44878151	G	A	D128N	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,1,44878151,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=RN220_HUMAN&rb=1&re=200&var=D128N	GRCh37	1	SNP	NA	NA	0	Gac/Aac	NA
OSCJM-PT18-392-T	55187	VPS13D	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT18-570-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	12316408	12316408	A	G	M230V	Missense_Mutation	L	1.265	getma.org/?cm=var&var=hg19,1,12316408,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=VP13D_HUMAN&rb=119&re=318&var=M230V	GRCh37	1	SNP	novel	.	0	Atg/Gtg	NM_015378.2
OSCJM-PT49-537-T	55187	VPS13D	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT49-585-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	12393343	12393343	G	A	S2783N	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,1,12393343,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=VP13D_HUMAN&rb=2674&re=2873&var=S2783N	GRCh37	1	SNP	novel	unknown	0	aGt/aAt	NM_015378.2
OSCJM-PT01-166-T	55198	APPL2	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	105597508	105597508	A	G	L226S	Missense_Mutation	M	2.215	getma.org/?cm=var&var=hg19,12,105597508,A,G&fts=all	getma.org/pdb.php?prot=DP13B_HUMAN&from=201&to=277&var=L226S	getma.org/?cm=msa&ty=f&p=DP13B_HUMAN&rb=201&re=277&var=L226S	GRCh37	-1	SNP	NA	NA	0	tTa/tCa	NM_001251904.1,NM_018171.3
OSCJM-PT13-258-T	55199	FAM86C1	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT13-257-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	71498601	71498601	G	T	A7S	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,11,71498601,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=F86C2_HUMAN&rb=1&re=90&var=A7S	GRCh37	1	SNP	rs12283300;COSM1561601	Cosmic	0.4791	Gcg/Tcg	NM_018172.2
OSCJM-PT46-394-T	55211	DPPA4	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT46-220-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	109049549	109049549	T	A	E167D	Missense_Mutation	N	0.55	getma.org/?cm=var&var=hg19,3,109049549,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=DPPA4_HUMAN&rb=1&re=180&var=E167D	GRCh37	-1	SNP	novel	unknown	0	gaA/gaT	NM_018189.3
OSCJM-PTA-367-T	55214	P3H2	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PTA-308-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	189700883	189700883	A	G	S426P	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,3,189700883,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=P3H2_HUMAN&rb=241&re=440&var=S426P	GRCh37	-1	SNP	novel	unknown	0	Tca/Cca	NM_018192.3
OSCJM-PT12-478-T	55214	P3H2	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT12-103-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	189700883	189700883	A	G	S426P	Missense_Mutation	L	1.445	getma.org/?cm=var&var=hg19,3,189700883,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=P3H2_HUMAN&rb=241&re=440&var=S426P	GRCh37	-1	SNP	novel	unknown	0	Tca/Cca	NM_018192.3
OSCJM-PT05-91-T	55229	PANK4	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	2453237	2453237	C	T	G43R	Missense_Mutation	M	3.195	getma.org/?cm=var&var=hg19,1,2453237,C,T&fts=all	getma.org/pdb.php?prot=PANK4_HUMAN&from=35&to=369&var=G43R	getma.org/?cm=msa&ty=f&p=PANK4_HUMAN&rb=35&re=369&var=G43R	GRCh37	-1	SNP	NA	NA	0	Ggg/Agg	NM_018216.1
OSCJM-PTB-347-T	55237	VRTN	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					14	74825015	74825015	G	A	R510H	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,14,74825015,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=VRTN_HUMAN&rb=326&re=700&var=R510H	GRCh37	1	SNP	novel	unknown	0.0002	cGt/cAt	NM_018228.2
OSCJM-PT20-600-T	55252	ASXL2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT20-506-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	25994365	25994365	G	A	P150S	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,2,25994365,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=ASXL2_HUMAN&rb=1&re=200&var=P150S	GRCh37	-1	SNP	novel	.	0	Cca/Tca	NA
OSCJM-PT38-234-T	55258	THNSL2	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT38-446-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	88482325	88482325	G	A	E304K	Missense_Mutation	N	0.325	getma.org/?cm=var&var=hg19,2,88482325,G,A&fts=all	getma.org/pdb.php?prot=THNS2_HUMAN&from=88&to=412&var=E304K	getma.org/?cm=msa&ty=f&p=THNS2_HUMAN&rb=88&re=412&var=E304K	GRCh37	1	SNP	novel	.	0	Gag/Aag	NM_018271.4
OSCJM-PT46-394-T	55281	TMEM140	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT46-220-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	134849740	134849740	G	A	E183K	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,7,134849740,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TM140_HUMAN&rb=1&re=183&var=E183K	GRCh37	1	SNP	novel	unknown	0	Gag/Aag	NM_018295.4
OSCJM-PT32-489-T	55283	MCOLN3	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT32-30-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	85491754	85491754	G	T	F321L	Missense_Mutation	L	1.89	getma.org/?cm=var&var=hg19,1,85491754,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=MCLN3_HUMAN&rb=201&re=363&var=F321L	GRCh37	-1	SNP	NA	NA	0	ttC/ttA	NM_018298.10
OSCJM-PT01-166-T	55294	FBXW7	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	153247289	153247289	G	C	R505G	Missense_Mutation	M	2.285	getma.org/?cm=var&var=hg19,4,153247289,G,C&fts=all	getma.org/pdb.php?prot=FBXW7_HUMAN&from=491&to=527&var=R505G	getma.org/?cm=msa&ty=f&p=FBXW7_HUMAN&rb=491&re=527&var=R505G	GRCh37	-1	SNP	novel	unknown	0	Cgc/Ggc	NM_033632.3
OSCJM-PT46-394-T	55294	FBXW7	hgsc.bcm.edu	Illumina	Somatic	A	T	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	153247171	153247171	A	T	V544D	Missense_Mutation	H	3.535	getma.org/?cm=var&var=hg19,4,153247171,A,T&fts=all	getma.org/pdb.php?prot=FBXW7_HUMAN&from=531&to=567&var=V544D	getma.org/?cm=msa&ty=f&p=FBXW7_HUMAN&rb=531&re=567&var=V544D	GRCh37	-1	SNP	novel	unknown	0	gTc/gAc	NM_033632.3
OSCJM-PTB-347-T	55304	SPTLC3	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PTB-173-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					20	13052961	13052961	C	T	R121*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,20,13052961,C,T&fts=all	NA	NA	GRCh37	1	SNP	NA	NA	0	Cga/Tga	NM_018327.2
OSCJM-PT01-166-T	55324	ABCF3	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT01-583-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					3	183907354	183907354	T	C	S375P	Missense_Mutation	N	0.785	getma.org/?cm=var&var=hg19,3,183907354,T,C&fts=all	getma.org/pdb.php?prot=ABCF3_HUMAN&from=178&to=424&var=S375P	getma.org/?cm=msa&ty=f&p=ABCF3_HUMAN&rb=178&re=424&var=S375P	GRCh37	1	SNP	novel	unknown	0	Tcc/Ccc	NM_018358.2
OSCJM-PT15-391-T	55325	UFSP2	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					4	186324680	186324680	C	T	G431S	Missense_Mutation	M	3.11	getma.org/?cm=var&var=hg19,4,186324680,C,T&fts=all	getma.org/pdb.php?prot=UFSP2_HUMAN&from=276&to=461&var=G431S	getma.org/?cm=msa&ty=f&p=UFSP2_HUMAN&rb=276&re=461&var=G431S	GRCh37	-1	SNP	novel	unknown	0.00001	Ggt/Agt	NM_018359.3
OSCJM-PT33-288-T	55339	WDR33	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT33-571-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	128466352	128466352	G	A	S1227F	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,2,128466352,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=WDR33_HUMAN&rb=1155&re=1336&var=S1227F	GRCh37	-1	SNP	novel	.	0	tCc/tTc	NM_018383.4
OSCJM-PT42-193-T	55339	WDR33	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT42-279-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					2	128466362	128466362	C	T	D1224N	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,2,128466362,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=WDR33_HUMAN&rb=1155&re=1336&var=D1224N	GRCh37	-1	SNP	novel	unknown	0	Gac/Aac	NM_018383.4
OSCJM-PT13-258-T	55422	ZNF331	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT13-257-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	54074868	54074868	C	T	T7M	Missense_Mutation	L	1.585	getma.org/?cm=var&var=hg19,19,54074868,C,T&fts=all	getma.org/pdb.php?prot=ZN331_HUMAN&from=6&to=46&var=T7M	getma.org/?cm=msa&ty=f&p=ZN331_HUMAN&rb=6&re=46&var=T7M	GRCh37	1	SNP	NA	NA	0.00002	aCg/aTg	NM_018555.5,NM_001253801.1
OSCJM-PT15-391-T	55534	MAML3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT15-284-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	140810533	140810533	G	A	A686V	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,4,140810533,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=MAML3_HUMAN&rb=528&re=727&var=A682V	GRCh37	-1	SNP	novel	unknown	0	gCt/gTt	NM_018717.4
OSCJM-PT13-258-T	55544	RBM38	hgsc.bcm.edu	Illumina	Somatic	-	C	OSCJM-PT13-257-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					20	55966692	55966693	-	C	A20Rfs*70	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	rs11481309	unknown	0	gcc/gCcc	NM_017495.5
OSCJM-PT12-478-T	55544	RBM38	hgsc.bcm.edu	Illumina	Somatic	-	C	OSCJM-PT12-103-N	-	-	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					20	55966692	55966693	-	C	A20Rfs*70	Frame_Shift_Ins	NA	1.4013e-45	NA	NA	NA	GRCh37	1	INS	rs11481309	unknown	0	gcc/gCcc	NM_017495.5
OSCJM-PT32-489-T	55556	ENOSF1	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					18	691266	691266	A	G	M145T	Missense_Mutation	N	-0.205	getma.org/?cm=var&var=hg19,18,691266,A,G&fts=all	getma.org/pdb.php?prot=ENOF1_HUMAN&from=140&to=232&var=M145T	getma.org/?cm=msa&ty=f&p=ENOF1_HUMAN&rb=140&re=232&var=M145T	GRCh37	-1	SNP	rs2612086	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.3146	aTg/aCg	NM_017512.5
OSCJM-PT03-388-T	55558	PLXNA3	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	153692792	153692792	G	T	V626L	Missense_Mutation	N	0.09	getma.org/?cm=var&var=hg19,X,153692792,G,T&fts=all	getma.org/pdb.php?prot=PLXA3_HUMAN&from=541&to=636&var=V626L	getma.org/?cm=msa&ty=f&p=PLXA3_HUMAN&rb=541&re=636&var=V626L	GRCh37	1	SNP	NA	NA	0	Gtg/Ttg	NM_017514.3
OSCJM-PT03-388-T	55561	CDC42BPG	hgsc.bcm.edu	Illumina	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	64600757	64600757	G	C	L893V	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,11,64600757,G,C&fts=all	getma.org/pdb.php?prot=MRCKG_HUMAN&from=879&to=929&var=L893V	getma.org/?cm=msa&ty=f&p=MRCKG_HUMAN&rb=879&re=929&var=L893V	GRCh37	-1	SNP	novel	unknown	0	Ctc/Gtc	NM_017525.2
OSCJM-PT40-169-T	55561	CDC42BPG	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					11	64597506	64597506	T	C	Q1135R	Missense_Mutation	N	-0.21	getma.org/?cm=var&var=hg19,11,64597506,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MRCKG_HUMAN&rb=1097&re=1363&var=Q1135R	GRCh37	-1	SNP	rs3741395	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.4632	cAg/cGg	NM_017525.2
OSCJM-PT40-169-T	55567	DNAH3	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	21069448	21069448	T	A	T1295S	Missense_Mutation	M	2.83	getma.org/?cm=var&var=hg19,16,21069448,T,A&fts=all	getma.org/pdb.php?prot=DYH3_HUMAN&from=1271&to=1390&var=T1295S	getma.org/?cm=msa&ty=f&p=DYH3_HUMAN&rb=1271&re=1390&var=T1295S	GRCh37	-1	SNP	NA	NA	0	Acc/Tcc	NM_017539.1
OSCJM-PT05-91-T	55573	CDV3	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					3	133305428	133305428	C	T	A163V	Missense_Mutation	N	-0.08	getma.org/?cm=var&var=hg19,3,133305428,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CDV3_HUMAN&rb=74&re=256&var=A163V	GRCh37	1	SNP	novel	unknown	0.00001	gCg/gTg	NM_001134422.1,NM_017548.4,NM_001282763.1
OSCJM-PT49-537-T	55576	STAB2	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT49-585-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	104042529	104042529	C	T	R368*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,12,104042529,C,T&fts=all	NA	NA	GRCh37	1	SNP	novel	unknown	0.00004	Cga/Tga	NM_017564.9
OSCJM-PTD-578-T	55600	ITLN1	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PTD-439-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	160850996	160850996	G	T	T171K	Missense_Mutation	M	3.285	getma.org/?cm=var&var=hg19,1,160850996,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ITLN1_HUMAN&rb=32&re=255&var=T171K	GRCh37	-1	SNP	NA	NA	0	aCg/aAg	NM_017625.2
OSCJM-PT32-489-T	55601	DDX60	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					4	169183239	169183239	A	G	L1062S	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,4,169183239,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=DDX60_HUMAN&rb=937&re=1150&var=L1062S	GRCh37	-1	SNP	novel	.	0	tTa/tCa	NM_017631.5
OSCJM-PT41-180-T	55613	MTMR8	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT41-594-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	63574764	63574764	C	T	E121K	Missense_Mutation	M	2.015	getma.org/?cm=var&var=hg19,X,63574764,C,T&fts=all	getma.org/pdb.php?prot=MTMR8_HUMAN&from=1&to=154&var=E121K	getma.org/?cm=msa&ty=f&p=MTMR8_HUMAN&rb=1&re=154&var=E121K	GRCh37	-1	SNP	novel	unknown	0	Gag/Aag	NM_017677.3
OSCJM-PT35-37-T	55614	KIF16B	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT35-339-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					20	16486798	16486798	C	T	S246N	Missense_Mutation	H	3.855	getma.org/?cm=var&var=hg19,20,16486798,C,T&fts=all	getma.org/pdb.php?prot=KI16B_HUMAN&from=9&to=358&var=S246N	getma.org/?cm=msa&ty=f&p=KI16B_HUMAN&rb=9&re=358&var=S246N	GRCh37	-1	SNP	NA	NA	0	aGt/aAt	NM_024704.4,NM_001199865.1
OSCJM-PT47-449-T	55629	PNRC2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT47-225-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	24287954	24287954	G	A	G3S	Missense_Mutation	M	1.935	getma.org/?cm=var&var=hg19,1,24287954,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PNRC2_HUMAN&rb=1&re=137&var=G3S	GRCh37	1	SNP	novel	unknown	0	Ggt/Agt	NM_017761.3
OSCJM-PT36-331-T	55630	SLC39A4	hgsc.bcm.edu	SOLID	Somatic	T	C	OSCJM-PT36-126-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	145639726	145639726	T	C	T357A	Missense_Mutation	L	0.86	getma.org/?cm=var&var=hg19,8,145639726,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=S39A4_HUMAN&rb=325&re=639&var=T357A	GRCh37	-1	SNP	NA	NA	0.5496	Acc/Gcc	NM_130849.3
OSCJM-PTA-367-T	55630	SLC39A4	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					8	145641328	145641328	C	T	A114T	Missense_Mutation	N	0.345	getma.org/?cm=var&var=hg19,8,145641328,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=S39A4_HUMAN&rb=1&re=200&var=A114T	GRCh37	-1	SNP	rs17855765	byCluster;byFrequency;by1000genomes	0.4943	Gct/Act	NM_130849.3
OSCJM-PTB-347-T	55653	BCAS4	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PTB-173-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					20	49411698	49411698	G	T	E56D	Missense_Mutation	L	0.84	getma.org/?cm=var&var=hg19,20,49411698,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=BCAS4_HUMAN&rb=1&re=149&var=E56D	GRCh37	1	SNP	rs2272962	byHapMap	0.2052	gaG/gaT	NM_017843.3
OSCJM-PT03-388-T	55665	URGCP	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	43917473	43917473	C	T	R530Q	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,7,43917473,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=URGCP_HUMAN&rb=4&re=929&var=R530Q	GRCh37	-1	SNP	novel	unknown	0.00002	cGg/cAg	NA
OSCJM-PT50-575-T	55680	RUFY2	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					10	70164481	70164481	G	A	P77L	Missense_Mutation	M	3.07	getma.org/?cm=var&var=hg19,10,70164481,G,A&fts=all	getma.org/pdb.php?prot=RUFY2_HUMAN&from=86&to=218&var=P91L	getma.org/?cm=msa&ty=f&p=RUFY2_HUMAN&rb=86&re=218&var=P91L	GRCh37	-1	SNP	novel	unknown	0	cCc/cTc	NM_017987.4
OSCJM-PT25-327-T	55703	POLR3B	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT25-74-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	106850937	106850937	A	G	Y772C	Missense_Mutation	M	3.42	getma.org/?cm=var&var=hg19,12,106850937,A,G&fts=all	getma.org/pdb.php?prot=RPC2_HUMAN&from=666&to=1041&var=Y772C	getma.org/?cm=msa&ty=f&p=RPC2_HUMAN&rb=666&re=1041&var=Y772C	GRCh37	1	SNP	novel	.	0	tAt/tGt	NM_018082.5
OSCJM-PT03-388-T	55705	IPO9	hgsc.bcm.edu	Cross	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					1	201839846	201839846	G	C	E757Q	Missense_Mutation	M	2.05	getma.org/?cm=var&var=hg19,1,201839846,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=IPO9_HUMAN&rb=720&re=919&var=E757Q	GRCh37	1	SNP	novel	unknown	0	Gag/Cag	NM_018085.4
OSCJM-PT10-325-T	55731	FAM222B	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT10-70-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	27085842	27085842	C	T	E379K	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,17,27085842,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CQ063_HUMAN&rb=211&re=560&var=E379K	GRCh37	-1	SNP	novel	unknown	0.00003	Gag/Aag	NA
OSCJM-PT37-513-T	55732	C1ORF112	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					1	169801648	169801648	G	C	X513_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	1	SNP	novel	.	0	NA	NM_018186.2
OSCJM-PT36-331-T	55745	AP5M1	hgsc.bcm.edu	SOLID	Somatic	A	C	OSCJM-PT36-126-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	57741107	57741107	A	C	S74R	Missense_Mutation	L	1.355	getma.org/?cm=var&var=hg19,14,57741107,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=AP5M1_HUMAN&rb=1&re=200&var=S74R	GRCh37	1	SNP	novel	.	0	Agc/Cgc	NM_018229.3
OSCJM-PT46-394-T	55750	AGK	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	141296372	141296372	A	G	N51S	Missense_Mutation	L	1.59	getma.org/?cm=var&var=hg19,7,141296372,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=AGK_HUMAN&rb=1&re=61&var=N51S	GRCh37	1	SNP	novel	unknown	0.00001	aAt/aGt	NM_018238.3
OSCJM-PT46-394-T	55762	ZNF701	hgsc.bcm.edu	Illumina	Somatic	A	C	OSCJM-PT46-220-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					19	53085663	53085663	A	C	K183N	Missense_Mutation	L	1.195	getma.org/?cm=var&var=hg19,19,53085663,A,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=ZN701_HUMAN&rb=49&re=228&var=K117N	GRCh37	1	SNP	novel	unknown	0	aaA/aaC	NA
OSCJM-PT20-600-T	55773	TBC1D23	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT20-506-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					3	100015028	100015028	A	G	N262S	Missense_Mutation	N	0.295	getma.org/?cm=var&var=hg19,3,100015028,A,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=TBC23_HUMAN&rb=247&re=323&var=N262S	GRCh37	1	SNP	novel	.	0	aAt/aGt	NM_001199198.2
OSCJM-PT05-91-T	55790	CSGALNACT1	hgsc.bcm.edu	Cross	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					8	19266163	19266163	C	T	G424R	Missense_Mutation	H	3.515	getma.org/?cm=var&var=hg19,8,19266163,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CGAT1_HUMAN&rb=65&re=507&var=G424R	GRCh37	-1	SNP	novel	unknown	0	Ggg/Agg	NM_018371.4
OSCJM-PT03-388-T	55810	FOXJ2	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	8192597	8192597	G	C	D57H	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,12,8192597,G,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=FOXJ2_HUMAN&rb=1&re=65&var=D57H	GRCh37	1	SNP	NA	NA	0	Gac/Cac	NM_018416.2
OSCJM-PT03-388-T	55810	FOXJ2	hgsc.bcm.edu	SOLID	Somatic	G	C	OSCJM-PT03-66-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					12	8192686	8192686	G	C	K86N	Missense_Mutation	M	2.545	getma.org/?cm=var&var=hg19,12,8192686,G,C&fts=all	getma.org/pdb.php?prot=FOXJ2_HUMAN&from=66&to=162&var=K86N	getma.org/?cm=msa&ty=f&p=FOXJ2_HUMAN&rb=66&re=162&var=K86N	GRCh37	1	SNP	NA	NA	0	aaG/aaC	NM_018416.2
OSCJM-PT12-478-T	55841	WWC3	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT12-103-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	10085582	10085582	G	A	A495T	Missense_Mutation	N	0	getma.org/?cm=var&var=hg19,X,10085582,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=WWC3_HUMAN&rb=291&re=549&var=A495T	GRCh37	1	SNP	rs5934750	byCluster;byFrequency	0	Gcc/Acc	NM_015691.3
OSCJM-PT37-513-T	55841	WWC3	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PT37-248-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	10107538	10107538	G	T	R1057L	Missense_Mutation	M	2.31	getma.org/?cm=var&var=hg19,X,10107538,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=WWC3_HUMAN&rb=950&re=1092&var=R1057L	GRCh37	1	SNP	novel	.	0	cGt/cTt	NM_015691.3
OSCJM-PT32-489-T	55852	TEX2	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT32-30-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					17	62290905	62290905	T	A	T225S	Missense_Mutation	L	1.78	getma.org/?cm=var&var=hg19,17,62290905,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=TEX2_HUMAN&rb=182&re=381&var=T225S	GRCh37	-1	SNP	NA	NA	0	Act/Tct	NA
OSCJM-PT35-37-T	55900	ZNF302	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT35-339-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					19	35173717	35173717	T	A	H15Q	Missense_Mutation	N	-2.07	getma.org/?cm=var&var=hg19,19,35173717,T,A&fts=all	getma.org/pdb.php?prot=Q6X7T3_HUMAN&from=4&to=44&var=H15Q	getma.org/?cm=msa&ty=f&p=Q6X7T3_HUMAN&rb=4&re=44&var=H15Q	GRCh37	1	SNP	novel	.	0.013	caT/caA	NA
OSCJM-PT15-391-T	55901	THSD1	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT15-284-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	52952102	52952102	C	T	R668K	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,13,52952102,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=THSD1_HUMAN&rb=410&re=850&var=R668K	GRCh37	-1	SNP	NA	NA	0	aGg/aAg	NM_018676.3
OSCJM-PT47-449-T	55911	APOBR	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT47-225-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	28509580	28509580	G	T	R1036I	Missense_Mutation	L	0.895	getma.org/?cm=var&var=hg19,16,28509580,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=APOBR_HUMAN&rb=1&re=1087&var=R1036I	GRCh37	1	SNP	novel	unknown	0	aGa/aTa	NA
OSCJM-PT50-575-T	55997	CFC1	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT50-81-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	131356215	131356215	C	T	G83S	Missense_Mutation	N	0.27	getma.org/?cm=var&var=hg19,2,131356215,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=CFC1_HUMAN&rb=1&re=122&var=G83S	GRCh37	-1	SNP	novel	unknown	0	Ggt/Agt	NM_032545.3
OSCJM-PT20-600-T	56000	NXF3	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT20-506-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	102335116	102335116	A	G	L319S	Missense_Mutation	L	1.04	getma.org/?cm=var&var=hg19,X,102335116,A,G&fts=all	getma.org/pdb.php?prot=NXF3_HUMAN&from=195&to=343&var=L319S	getma.org/?cm=msa&ty=f&p=NXF3_HUMAN&rb=195&re=343&var=L319S	GRCh37	-1	SNP	novel	.	0	tTa/tCa	NM_022052.1
OSCJM-PTA-367-T	56052	ALG1	hgsc.bcm.edu	SOLID	Somatic	C	G	OSCJM-PTA-308-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					16	5123195	5123195	C	G	Q110E	Missense_Mutation	M	3.19	getma.org/?cm=var&var=hg19,16,5123195,C,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=ALG1_HUMAN&rb=1&re=200&var=Q110E	GRCh37	1	SNP	NA	NA	0	Cag/Gag	NM_019109.4
OSCJM-PTC-139-T	56062	KLHL4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTC-295-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					X	86868884	86868884	G	A	D143N	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,X,86868884,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=KLHL4_HUMAN&rb=1&re=171&var=D143N	GRCh37	1	SNP	novel	.	0	Gat/Aat	NM_019117.4
OSCJM-PT22-229-T	56100	PCDHGB6	hgsc.bcm.edu	SOLID	Somatic	T	A	OSCJM-PT22-321-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	140789948	140789948	T	A	F727I	Missense_Mutation	M	3.195	getma.org/?cm=var&var=hg19,5,140789948,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCDGI_HUMAN&rb=664&re=806&var=F727I	GRCh37	1	SNP	novel	.	0	Ttc/Atc	NM_018926.2,NM_032100.1
OSCJM-PT05-91-T	56104	PCDHGB1	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT05-46-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	140732009	140732009	T	A	C728S	Missense_Mutation	N	0.245	getma.org/?cm=var&var=hg19,5,140732009,T,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCDGD_HUMAN&rb=660&re=801&var=C728S	GRCh37	1	SNP	novel	unknown	0	Tgc/Agc	NM_018922.2,NM_032095.1
OSCJM-PT40-169-T	56109	PCDHGA6	hgsc.bcm.edu	Illumina	Somatic	T	A	OSCJM-PT40-108-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	140755287	140755287	T	A	V546E	Missense_Mutation	H	3.865	getma.org/?cm=var&var=hg19,5,140755287,T,A&fts=all	getma.org/pdb.php?prot=PCDG6_HUMAN&from=457&to=553&var=V546E	getma.org/?cm=msa&ty=f&p=PCDG6_HUMAN&rb=457&re=553&var=V546E	GRCh37	1	SNP	novel	unknown	0	gTg/gAg	NM_018919.2,NM_032086.1
OSCJM-PT18-392-T	56110	PCDHGA5	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT18-570-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	140745056	140745056	C	T	P387S	Missense_Mutation	N	0.45	getma.org/?cm=var&var=hg19,5,140745056,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCDG5_HUMAN&rb=352&re=443&var=P387S	GRCh37	1	SNP	NA	NA	0	Cct/Tct	NM_018918.2,NM_032054.1
OSCJM-PT03-388-T	56125	PCDHB11	hgsc.bcm.edu	SOLID	Somatic	A	G	OSCJM-PT03-66-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	140579462	140579462	A	G	M39V	Missense_Mutation	L	1.855	getma.org/?cm=var&var=hg19,5,140579462,A,G&fts=all	getma.org/pdb.php?prot=PCDBB_HUMAN&from=29&to=112&var=M39V	getma.org/?cm=msa&ty=f&p=PCDBB_HUMAN&rb=29&re=112&var=M39V	GRCh37	1	SNP	NA	NA	0	Atg/Gtg	NM_018931.2
OSCJM-PTA-367-T	56128	PCDHB8	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	140559041	140559041	G	A	A476T	Missense_Mutation	H	3.635	getma.org/?cm=var&var=hg19,5,140559041,G,A&fts=all	getma.org/pdb.php?prot=PCDB8_HUMAN&from=457&to=553&var=A476T	getma.org/?cm=msa&ty=f&p=PCDB8_HUMAN&rb=457&re=553&var=A476T	GRCh37	1	SNP	NA	NA	0	Gcc/Acc	NM_019120.3
OSCJM-PT01-166-T	56129	PCDHB7	hgsc.bcm.edu	Cross	Somatic	G	A	OSCJM-PT01-583-N	G	G	NA	NA	NA	NA	Unknown	Phase_I	Capture	454	Valid	.	.					5	140553798	140553798	G	A	R461H	Missense_Mutation	L	1.6	getma.org/?cm=var&var=hg19,5,140553798,G,A&fts=all	getma.org/pdb.php?prot=PCDB7_HUMAN&from=456&to=552&var=R461H	getma.org/?cm=msa&ty=f&p=PCDB7_HUMAN&rb=456&re=552&var=R461H	GRCh37	1	SNP	rs137953621	NA	0.00001	cGt/cAt	NM_018940.2
OSCJM-PT48-530-T	56129	PCDHB7	hgsc.bcm.edu	Illumina	Somatic	A	G	OSCJM-PT48-60-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	140553842	140553842	A	G	T476A	Missense_Mutation	L	1.5	getma.org/?cm=var&var=hg19,5,140553842,A,G&fts=all	getma.org/pdb.php?prot=PCDB7_HUMAN&from=456&to=552&var=T476A	getma.org/?cm=msa&ty=f&p=PCDB7_HUMAN&rb=456&re=552&var=T476A	GRCh37	1	SNP	novel	unknown	0	Aca/Gca	NM_018940.2
OSCJM-PTA-367-T	56131	PCDHB4	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PTA-308-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	140502919	140502919	G	A	A447T	Missense_Mutation	M	2.175	getma.org/?cm=var&var=hg19,5,140502919,G,A&fts=all	getma.org/pdb.php?prot=PCDB4_HUMAN&from=351&to=450&var=A447T	getma.org/?cm=msa&ty=f&p=PCDB4_HUMAN&rb=351&re=450&var=A447T	GRCh37	1	SNP	NA	NA	0	Gcc/Acc	NM_018938.2
OSCJM-PT11-385-T	56132	PCDHB3	hgsc.bcm.edu	Illumina	Somatic	CCGGGCGGCTGAG	-	OSCJM-PT11-517-N	CCGGGCGGCTGAG	CCGGGCGGCTGAG	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					5	140481964	140481976	CCGGGCGGCTGAG	-	A580Tfs*3	Frame_Shift_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	novel	unknown	0.0089	ccCCGGGCGGCTGAG/cc	NM_018937.2
OSCJM-PT33-288-T	56139	PCDHA10	hgsc.bcm.edu	SOLID	Somatic	T	G	OSCJM-PT33-571-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	140237387	140237387	T	G	V585G	Missense_Mutation	N	-1.01	getma.org/?cm=var&var=hg19,5,140237387,T,G&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCDAA_HUMAN&rb=581&re=669&var=V585G	GRCh37	1	SNP	rs251364	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.6231	gTt/gGt	NM_018901.2
OSCJM-PT07-43-T	56140	PCDHA8	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	140221139	140221139	G	A	S78N	Missense_Mutation	N	-2.05	getma.org/?cm=var&var=hg19,5,140221139,G,A&fts=all	getma.org/pdb.php?prot=PCDA8_HUMAN&from=29&to=112&var=S78N	getma.org/?cm=msa&ty=f&p=PCDA8_HUMAN&rb=29&re=112&var=S78N	GRCh37	1	SNP	NA	NA	0.5356	aGt/aAt	NM_018911.2
OSCJM-PT01-166-T	56140	PCDHA8	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	140220964	140220964	C	T	L20F	Missense_Mutation	L	1.41	getma.org/?cm=var&var=hg19,5,140220964,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCDA8_HUMAN&rb=1&re=58&var=L20F	GRCh37	1	SNP	NA	NA	0	Ctc/Ttc	NM_018911.2
OSCJM-PT05-91-T	56140	PCDHA8	hgsc.bcm.edu	Illumina	Somatic	C	T	OSCJM-PT05-46-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					5	140221984	140221984	C	T	R360C	Missense_Mutation	L	1.665	getma.org/?cm=var&var=hg19,5,140221984,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=PCDA8_HUMAN&rb=355&re=446&var=R360C	GRCh37	1	SNP	novel	unknown	0.00006	Cgt/Tgt	NM_018911.2
OSCJM-PT01-166-T	56157	TEX13A	hgsc.bcm.edu	Illumina	Somatic	C	-	OSCJM-PT01-583-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					X	104464282	104464282	C	-	X199_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	rs140438281	unknown	0	Gat/at	NA
OSCJM-PT43-201-T	56157	TEX13A	hgsc.bcm.edu	Illumina	Somatic	C	-	OSCJM-PT43-326-N	C	C	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					X	104464282	104464282	C	-	X199_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	rs140438281	unknown	0	Gat/at	NA
OSCJM-PT01-166-T	56157	TEX13A	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PT01-583-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					X	104464277	104464277	A	-	X200_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	gtT/gt	NA
OSCJM-PT43-201-T	56157	TEX13A	hgsc.bcm.edu	Illumina	Somatic	A	-	OSCJM-PT43-326-N	A	A	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					X	104464277	104464277	A	-	X200_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	DEL	novel	unknown	0	gtT/gt	NA
OSCJM-PT32-489-T	56163	RNF17	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PT32-30-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					13	25448319	25448319	A	T	E1505D	Missense_Mutation	L	1.625	getma.org/?cm=var&var=hg19,13,25448319,A,T&fts=all	getma.org/pdb.php?prot=RNF17_HUMAN&from=1409&to=1550&var=E1505D	getma.org/?cm=msa&ty=f&p=RNF17_HUMAN&rb=1409&re=1550&var=E1505D	GRCh37	1	SNP	NA	NA	0	gaA/gaT	NM_031277.2,NM_001184993.1
OSCJM-PTB-347-T	56164	STK31	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PTB-173-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					7	23823242	23823242	T	C	L703P	Missense_Mutation	M	1.995	getma.org/?cm=var&var=hg19,7,23823242,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=STK31_HUMAN&rb=231&re=743&var=L703P	GRCh37	1	SNP	novel	unknown	0	cTg/cCg	NM_031414.4
OSCJM-PT07-43-T	56172	ANKH	hgsc.bcm.edu	SOLID	Somatic	C	T	OSCJM-PT07-87-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					5	14716914	14716914	C	T	V348M	Missense_Mutation	N	0.695	getma.org/?cm=var&var=hg19,5,14716914,C,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=ANKH_HUMAN&rb=346&re=403&var=V348M	GRCh37	-1	SNP	NA	NA	0.0002	Gtg/Atg	NM_054027.4
OSCJM-PT50-575-T	56252	YLPM1	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT50-81-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	75278409	75278409	G	A	R1772Q	Missense_Mutation	L	0.805	getma.org/?cm=var&var=hg19,14,75278409,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=YLPM1_HUMAN&rb=1483&re=1640&var=R1577Q	GRCh37	1	SNP	novel	unknown	0.00001	cGa/cAa	NM_019589.2
OSCJM-PT41-180-T	56253	CRTAM	hgsc.bcm.edu	Illumina	Somatic	G	A	OSCJM-PT41-594-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					11	122724785	122724785	G	A	E161K	Missense_Mutation	M	2.425	getma.org/?cm=var&var=hg19,11,122724785,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=CRTAM_HUMAN&rb=121&re=207&var=E161K	GRCh37	1	SNP	novel	unknown	0	Gaa/Aaa	NM_019604.2
OSCJM-PTC-139-T	56257	MEPCE	hgsc.bcm.edu	SOLID	Somatic	G	T	OSCJM-PTC-295-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					7	100029088	100029088	G	T	A483S	Missense_Mutation	L	1.335	getma.org/?cm=var&var=hg19,7,100029088,G,T&fts=all	getma.org/pdb.php?prot=MEPCE_HUMAN&from=431&to=686&var=A483S	getma.org/?cm=msa&ty=f&p=MEPCE_HUMAN&rb=431&re=686&var=A483S	GRCh37	1	SNP	NA	NA	0	Gcc/Tcc	NM_019606.5
OSCJM-PT43-201-T	56288	PARD3	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT43-326-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					10	34759193	34759193	T	C	X135_splice	Splice_Site	NA	1.4013e-45	NA	NA	NA	GRCh37	-1	SNP	novel	unknown	0	NA	NM_019619.3
OSCJM-PT50-575-T	56339	METTL3	hgsc.bcm.edu	Illumina	Somatic	T	C	OSCJM-PT50-81-N	T	T	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					14	21969264	21969264	T	C	I303V	Missense_Mutation	L	1.765	getma.org/?cm=var&var=hg19,14,21969264,T,C&fts=all	NA	getma.org/?cm=msa&ty=f&p=MTA70_HUMAN&rb=201&re=388&var=I303V	GRCh37	-1	SNP	novel	unknown	0	Atc/Gtc	NM_019852.3
OSCJM-PT07-43-T	56655	POLE4	hgsc.bcm.edu	Illumina	Somatic	G	T	OSCJM-PT07-87-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					2	75185856	75185856	G	T	G17V	Missense_Mutation	N	0.205	getma.org/?cm=var&var=hg19,2,75185856,G,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=DPOE4_HUMAN&rb=1&re=38&var=G17V	GRCh37	1	SNP	rs12366	by2Hit2Allele;byCluster;byFrequency	0.4061	gGa/gTa	NM_019896.2
OSCJM-PT50-575-T	56776	FMN2	hgsc.bcm.edu	Illumina	Somatic	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	-	OSCJM-PT50-81-N	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	NA	NA	NA	NA	Unknown	Phase_I	Capture	.	Unknown	.	.					1	240370914	240370946	GCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	-	G941_A951del	In_Frame_Del	NA	1.4013e-45	NA	NA	NA	GRCh37	1	DEL	NA	NA	0.2361	ctGCCCCCTCTACCCGGAGCGGGAATACCTCCTCCg/ctg	NM_020066.4
OSCJM-PTD-578-T	56849	TCEAL7	hgsc.bcm.edu	SOLID	Somatic	A	T	OSCJM-PTD-439-N	A	A	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					X	102586386	102586386	A	T	R19W	Missense_Mutation	L	1.1	getma.org/?cm=var&var=hg19,X,102586386,A,T&fts=all	NA	getma.org/?cm=msa&ty=f&p=TCAL7_HUMAN&rb=1&re=97&var=R19W	GRCh37	1	SNP	NA	NA	0	Agg/Tgg	NM_152278.3
OSCJM-PT03-388-T	56893	UBQLN4	hgsc.bcm.edu	Illumina	Somatic	C	A	OSCJM-PT03-66-N	C	C	NA	NA	NA	NA	Unknown	.	Capture	454	Valid	.	.					1	156006852	156006852	C	A	E575*	Nonsense_Mutation	NA	0	getma.org/?cm=var&var=hg19,1,156006852,C,A&fts=all	NA	NA	GRCh37	-1	SNP	novel	unknown	0	Gag/Tag	NM_020131.3
OSCJM-PT19-481-T	56916	SMARCAD1	hgsc.bcm.edu	SOLID	Somatic	G	A	OSCJM-PT19-3-N	G	G	NA	NA	NA	NA	Unknown	.	Capture	.	Unknown	.	.					4	95170839	95170839	G	A	S247N	Missense_Mutation	N	0.69	getma.org/?cm=var&var=hg19,4,95170839,G,A&fts=all	NA	getma.org/?cm=msa&ty=f&p=SMRCD_HUMAN&rb=201&re=400&var=S247N	GRCh37	1	SNP	rs11722476	by2Hit2Allele;byCluster;byFrequency;byHapMap	0.4629	aGt/aAt	NA
