.gitignore
.readthedocs.yml
.travis.yml
CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
environment.yml
setup.cfg
setup.py
.dvc/.gitignore
.dvc/config
.dvc/creds/suite2p-testdata-dvc-b0d23791539c.p12
.dvc/plots/confusion.json
.dvc/plots/default.json
.dvc/plots/scatter.json
.dvc/plots/smooth.json
benchmarks/__init__.py
benchmarks/registration_metrics.py
data/test_data.dvc
docs/.nojekyll
docs/FAQ.rst
docs/Makefile
docs/celldetection.rst
docs/conf.py
docs/deconvolution.rst
docs/developer_doc.rst
docs/gui.rst
docs/index.html
docs/index.rst
docs/inputs.rst
docs/installation.rst
docs/make.bat
docs/multiday.rst
docs/outputs.rst
docs/registration.rst
docs/roiextraction.rst
docs/settings.rst
docs/_static/badrefimg.png
docs/_static/binary.png
docs/_static/binary_masks.png
docs/_static/block_arrows.png
docs/_static/block_phasecorr.png
docs/_static/block_upsample.png
docs/_static/colorbar.png
docs/_static/favicon.ico
docs/_static/fig4_review.png
docs/_static/manual_curation.PNG
docs/_static/manual_roi.png
docs/_static/mesoscope_selection.PNG
docs/_static/multi_select.PNG
docs/_static/overlapping_blocks.png
docs/_static/phase_vs_cross.png
docs/_static/phasecorr.png
docs/_static/reg_metrics.png
docs/_static/rigid_cross.png
docs/_static/rigid_phase.png
docs/_static/run_in_GUI.png
docs/_static/scanimage.png
docs/_static/visualize.png
docs/_static/visualize_selected.png
gui_images/multiselect.gif
helpers/loadFramesBuff.m
helpers/make_json_config.m
helpers/mesoscope_json_from_scanimage.m
helpers/nFramesTiff.m
jupyter/Run Suite2p.ipynb
jupyter/make_ops.ipynb
jupyter/multiple_functional_channels.ipynb
jupyter/run_pipeline_sbx.ipynb
jupyter/run_pipeline_tiffs_or_batch.ipynb
jupyter/separate_multichannel_expt.ipynb
jupyter/view_neuropil_masks.ipynb
scripts/make_tiff_scanimage_compatible.py
scripts/dependency_graph/.gitignore
scripts/dependency_graph/build_depgraph.bat
scripts/dependency_graph/build_depgraph_cycles.bat
scripts/profiler/profile_pipeline.bat
scripts/profiler/run_pipeline.py
suite2p/__init__.py
suite2p/__main__.py
suite2p/run_s2p.py
suite2p/version.py
suite2p.egg-info/PKG-INFO
suite2p.egg-info/SOURCES.txt
suite2p.egg-info/dependency_links.txt
suite2p.egg-info/entry_points.txt
suite2p.egg-info/requires.txt
suite2p.egg-info/top_level.txt
suite2p/classification/__init__.py
suite2p/classification/classifier.py
suite2p/classification/classify.py
suite2p/classifiers/classifier.npy
suite2p/detection/__init__.py
suite2p/detection/anatomical.py
suite2p/detection/chan2detect.py
suite2p/detection/denoise.py
suite2p/detection/detect.py
suite2p/detection/sourcery.py
suite2p/detection/sparsedetect.py
suite2p/detection/stats.py
suite2p/detection/utils.py
suite2p/extraction/__init__.py
suite2p/extraction/dcnv.py
suite2p/extraction/extract.py
suite2p/extraction/masks.py
suite2p/gui/__init__.py
suite2p/gui/buttons.py
suite2p/gui/classgui.py
suite2p/gui/drawroi.py
suite2p/gui/graphics.py
suite2p/gui/gui2p.py
suite2p/gui/io.py
suite2p/gui/masks.py
suite2p/gui/menus.py
suite2p/gui/merge.py
suite2p/gui/reggui.py
suite2p/gui/rungui.py
suite2p/gui/traces.py
suite2p/gui/utils.py
suite2p/gui/views.py
suite2p/gui/visualize.py
suite2p/io/__init__.py
suite2p/io/binary.py
suite2p/io/h5.py
suite2p/io/nwb.py
suite2p/io/save.py
suite2p/io/sbx.py
suite2p/io/server.py
suite2p/io/tiff.py
suite2p/io/utils.py
suite2p/logo/logo.png
suite2p/logo/logo_unshaded.png
suite2p/ops/clean.py
suite2p/ops/ops.npy
suite2p/ops/ops_1P.npy
suite2p/ops/ops_dendrite.npy
suite2p/ops/ops_soma.npy
suite2p/registration/__init__.py
suite2p/registration/bidiphase.py
suite2p/registration/metrics.py
suite2p/registration/nonrigid.py
suite2p/registration/register.py
suite2p/registration/rigid.py
suite2p/registration/utils.py
suite2p/registration/zalign.py
tests/conftest.py
tests/temp_test_version.py
tests/test_io.py
tests/test_registration.py
tests/utils.py
tests/regression/test_classification_pipeline.py
tests/regression/test_detection_pipeline.py
tests/regression/test_extraction_pipeline.py
tests/regression/test_full_pipeline.py
tests/regression/test_registration_pipeline.py
tests/smoke/test_cli.py
tests/smoke/test_file_loading.py
tests/smoke/test_gui.py
tests/smoke/test_run_s2p.py