Vaccine Peptides Report

PATIENT INFO

{% for key, val in patient_info.items() %} {% endfor %}
{{ key }}{{ val }}

COMMAND LINE ARGUMENTS

{% for key, val in args %} {% endfor %}
{{ key }}{{ val }}
{% if input_json_file %}

Report generated from saved location: {{ input_json_file }}

{% endif %}
    {% if variants %} {% for v in variants %}
  1. {% for key, val in v.variant_data.items() %} {% endfor %}
    Variant {{ v.short_description }}
    {{ key }}{{ val }}

    Predicted Effect

    {% for key, val in v.effect_data.items() %} {% endfor %}
    {{ key }}{{ val }}

    {% if v.databases %}

    Databases

    {% for key, val in v.databases.items() %} {% endfor %}
    {{ key }}{{ val }}

    {% endif %}
      {% for p in v.peptides %}
    1. {% if include_manufacturability %} {% endif %}
      {{ p.header_display_data.aa_before_mutation }}{{ p.header_display_data.aa_mutant }}{{ p.header_display_data.aa_after_mutation }}
      {% for key, val in p.peptide_data.items() %} {% endfor %}
      {{ key }}{{ val }}
      Manufacturability
      {% for key, val in p.manufacturability_data.items() %} {% endfor %}
      {{ key }}{{ val }}
      Predicted mutant epitopes
      {% for key in p.epitopes[0] %} {% endfor %} {% for e in p.epitopes %} {% for _, val in e.items() %} {% endfor %} {% endfor %}
      {{ key }}
      {{ val }}
      {% if include_wt_epitopes %}
      {% if p.wt_epitopes %}

      Predicted strong binders that do not overlap the mutation

      {% for e in p.wt_epitopes %} {% endfor %}
      Sequence IC50 Allele
      {{ e["Sequence"] }} {{ e["IC50"] }} {{ e["Allele"] }}
      {% else %}

      No predicted strong binders that do not overlap the mutation.

      {% endif %}
      {% endif %}
      2. {% endfor %}
    2. {% endfor %}
{% if reviewers %} {% for r in reviewers %} {% endfor %}
Reviewed By
{{ r }}


{% endif %}
Final Review
Name{{ final_review }}
Signature
Date
{% else %}

No variants with sufficient vaccine peptides were found.

{% endif %}