Metadata-Version: 1.1
Name: alignparse
Version: 0.2.5
Summary: Align sequences and then parse features.
Home-page: https://github.com/jbloomlab/alignparse
Author: `the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_
Author-email: jbloom@fredhutch.org
License: GPLv3
Download-URL: https://github.com/jbloomlab/alignparse/tarball/0.2.5
Description: ===============================
        alignparse
        ===============================
        
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        ``alignparse`` is a Python package written by `the Bloom lab <https://research.fhcrc.org/bloom/en.html>`_. 
        It is designed to align long sequencing reads (such as those from PacBio circular consensus sequencing) to targets, filter these alignments based on user-provided specifications, and parse out user-defined sequence features.
        For each read that passes the filters, information about the features (e.g. accuracy, sequence, mutations) is retained for further analyses. 
        
        See the `alignparse documentation <https://jbloomlab.github.io/alignparse>`_ for details on how to install and use ``alignparse``.
        
        Please `cite alignparse <https://jbloomlab.github.io/alignparse/acknowledgements.html>`_ if you use it in your work.
        
        The source code is `on GitHub <https://github.com/jbloomlab/alignparse>`_.
        
        To contribute to this package, read the instructions in `CONTRIBUTING.rst <CONTRIBUTING.rst>`_.
        
        To report issues or seek support, please use the `GitHub issue tracker <https://github.com/jbloomlab/alignparse/issues>`_.
        
Platform: Linux and Mac OS X.
