.gitignore
CONTRIBUTING.rst
README.md
asv.conf.json
requirements.txt
setup.py
BaSiCpy.egg-info/PKG-INFO
BaSiCpy.egg-info/SOURCES.txt
BaSiCpy.egg-info/dependency_links.txt
BaSiCpy.egg-info/requires.txt
BaSiCpy.egg-info/top_level.txt
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ExampleData/Timelapse_nanog/110930AF6_p0011_t00189_z001_w1.tif
ExampleData/Timelapse_nanog/tmp
ExampleData/WSI_brain/C3-BrainSection0001.tif
ExampleData/WSI_brain/C3-BrainSection0002.tif
ExampleData/WSI_brain/C3-BrainSection0003.tif
ExampleData/WSI_brain/C3-BrainSection0004.tif
ExampleData/WSI_brain/C3-BrainSection0005.tif
ExampleData/WSI_brain/C3-BrainSection0006.tif
ExampleData/WSI_brain/C3-BrainSection0007.tif
ExampleData/WSI_brain/C3-BrainSection0008.tif
ExampleData/WSI_brain/C3-BrainSection0009.tif
ExampleData/WSI_brain/C3-BrainSection0010.tif
ExampleData/WSI_brain/C3-BrainSection0011.tif
ExampleData/WSI_brain/C3-BrainSection0012.tif
ExampleData/WSI_brain/C3-BrainSection0013.tif
ExampleData/WSI_brain/C3-BrainSection0014.tif
ExampleData/WSI_brain/C3-BrainSection0015.tif
ExampleData/WSI_brain/C3-BrainSection0016.tif
ExampleData/WSI_brain/C3-BrainSection0017.tif
ExampleData/WSI_brain/C3-BrainSection0018.tif
ExampleData/WSI_brain/C3-BrainSection0019.tif
ExampleData/WSI_brain/C3-BrainSection0020.tif
ExampleData/WSI_brain/C3-BrainSection0021.tif
ExampleData/WSI_brain/C3-BrainSection0022.tif
ExampleData/WSI_brain/C3-BrainSection0023.tif
ExampleData/WSI_brain/C3-BrainSection0024.tif
ExampleData/WSI_brain/C3-BrainSection0025.tif
ExampleData/WSI_brain/C3-BrainSection0026.tif
ExampleData/WSI_brain/C3-BrainSection0027.tif
ExampleData/WSI_brain/C3-BrainSection0028.tif
ExampleData/WSI_brain/C3-BrainSection0029.tif
ExampleData/WSI_brain/C3-BrainSection0030.tif
ExampleData/WSI_brain/C3-BrainSection0031.tif
ExampleData/WSI_brain/C3-BrainSection0032.tif
ExampleData/WSI_brain/C3-BrainSection0033.tif
ExampleData/WSI_brain/C3-BrainSection0034.tif
ExampleData/WSI_brain/C3-BrainSection0035.tif
ExampleData/WSI_brain/C3-BrainSection0036.tif
ExampleData/WSI_brain/C3-BrainSection0037.tif
ExampleData/WSI_brain/C3-BrainSection0038.tif
ExampleData/WSI_brain/C3-BrainSection0039.tif
ExampleData/WSI_brain/C3-BrainSection0040.tif
ExampleData/WSI_brain/C3-BrainSection0041.tif
ExampleData/WSI_brain/C3-BrainSection0042.tif
ExampleData/WSI_brain/C3-BrainSection0043.tif
ExampleData/WSI_brain/C3-BrainSection0044.tif
ExampleData/WSI_brain/C3-BrainSection0045.tif
ExampleData/WSI_brain/C3-BrainSection0046.tif
ExampleData/WSI_brain/C3-BrainSection0047.tif
ExampleData/WSI_brain/C3-BrainSection0048.tif
ExampleData/WSI_brain/C3-BrainSection0049.tif
ExampleData/WSI_brain/C3-BrainSection0050.tif
ExampleData/WSI_brain/C3-BrainSection0051.tif
ExampleData/WSI_brain/C3-BrainSection0052.tif
ExampleData/WSI_brain/C3-BrainSection0053.tif
ExampleData/WSI_brain/C3-BrainSection0054.tif
ExampleData/WSI_brain/C3-BrainSection0055.tif
ExampleData/WSI_brain/C3-BrainSection0056.tif
ExampleData/WSI_brain/C3-BrainSection0057.tif
ExampleData/WSI_brain/C3-BrainSection0058.tif
ExampleData/WSI_brain/C3-BrainSection0059.tif
ExampleData/WSI_brain/C3-BrainSection0060.tif
ExampleData/WSI_brain/C3-BrainSection0061.tif
ExampleData/WSI_brain/C3-BrainSection0062.tif
ExampleData/WSI_brain/C3-BrainSection0063.tif
ExampleData/WSI_brain/TileConfiguration.registered.txt
ExampleData/WSI_brain/TileConfiguration.txt
Notebooks/example_brain_WSI.ipynb
Notebooks/example_brightfield.ipynb
Notebooks/example_timelapse_nanog.ipynb
benchmarks/__init__.py
benchmarks/benchmarks.py
figures/outline.png
pybasic/__init__.py
pybasic/_background.py
pybasic/_settings.py
pybasic/tools/__init__.py
pybasic/tools/_dct2d_tools.py
pybasic/tools/_load_data.py
pybasic/tools/_resize.py
pybasic/tools/inexact_alm_rspca_l1.py
tests/test_data/dcttool_mirt_dct2_in1.txt
tests/test_data/dcttool_mirt_dct2_in2.txt
tests/test_data/dcttool_mirt_dct2_in3.txt
tests/test_data/dcttool_mirt_dct2_out1.txt
tests/test_data/dcttool_mirt_dct2_out2.txt
tests/test_data/dcttool_mirt_dct2_out3.txt
tests/units/test_dct2D_tools.py
tests/units/test_setting.py