Metadata-Version: 2.1
Name: cutevariant
Version: 0.2.4
Summary: GUI to visualize and process variant data
Home-page: https://github.com/labsquare/cutevariant
Author: Sacha Schutz, Pierre Vignet
Author-email: sacha@labsquare.org
License: UNKNOWN
Description: # Cutevariant
        
        **A standalone and free application to explore genetics variations from VCF file**
        
        
        ![CI](https://github.com/labsquare/cutevariant/workflows/CI/badge.svg)
        
        ![](https://raw.githubusercontent.com/labsquare/cutevariant/devel/screencast.gif)
        
        Cutevariant is a cross-plateform application dedicated to maniupulate and filter variation from annotated VCF file. 
        When you create a project, data are imported into an sqlite database that cutevariant queries according your needs. 
        Presently, SnpEff and VEP annotations are supported. 
        Once your project is created, you can query variant using different gui controller or directly using the VQL language. This Domain Specific Language is specially designed for cutevariant and try to keep the same syntax than SQL for an easy use.
        
        ![](https://raw.githubusercontent.com/labsquare/cutevariant/devel/screencast.gif)
        
        
        
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        |:-------------------------:|:-------------------------:|:-------------------------:|
        |<img width="1604" alt="screen shot 2017-08-07 at 12 18 15 pm" src="https://raw.githubusercontent.com/labsquare/cutevariant/devel/screenshot1.png"> |<img width="1604" alt="screen shot 2017-08-07 at 12 18 15 pm" src="https://raw.githubusercontent.com/labsquare/cutevariant/devel/screenshot2.png">|<img width="1604" alt="screen shot 2017-08-07 at 12 18 15 pm" src="https://raw.githubusercontent.com/labsquare/cutevariant/devel/screenshot4.png">|
        
        
        # Installation
        
        ## Windows 
        [Windows standalone binary](https://github.com/labsquare/cutevariant/releases/download/0.2.1/cutevariant-win32-latest.zip)
        
        ## PyPi
        Cutevariant is avaible from [Pypi](https://pypi.org/project/cutevariant/) : 
        
            pip install cutevariant # install
            cutevariant             # run
        
        ## From source 
        - Python 3.7 or newer is required  
        
        ```
        git clone https://github.com/labsquare/cutevariant.git
        make install_deps 
        make run 
        ```
        
Keywords: GUI,health
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Description-Content-Type: text/markdown
Provides-Extra: doc
Provides-Extra: dev
