Metadata-Version: 2.1
Name: metabodirect
Version: 0.1.1
Summary: Analyze FT-ICR-MS data
Home-page: https://github.com/Coayala/MetaboDirect
Author: Christian Ayala
Author-email: cayalaortiz@email.arizona.edu
License: LICENSE
Description: # MetaboDirect
        MetaboDirect is a comprehensive pipeline for the analysis of Direct Injection Mass Spectrometry (DI-MS) data.
        
        ## Installation
        
        Metabodirect can be obtaining by cloning this repository
        
        ```
        git clone https://github.com/Coayala/MetaboDirect.git
        ```
        
        MetaboDirect requires Python (3.5 and above), R (4 and above) and Cytoscape (3.8 and above) with the following libraries/modules:
        
        ### Python
        
        - argparse
        - numpy
        - pandas
        - seaborn
        - more-itertools
        - py4cytoscape
        
        ### R
        
        - tidyverse
        - RColorBrewer
        - vegan
        - ggnewscale
        - ggpubr
        - vegan
        - KEGGREST
        - factoextra
        - UpSetR
        - pmartR (for normalization tests)
        
        ### Cytoscape
        
        - FileTransfer
        
        ## Usage
        
        Information about the arguments can be obtaining using the option -h/--help
        
        ```
        ./run_metabodirect.py -h
        ```
        For more information please check the [User Manual](https://coayala.github.io/MetaboDirect/).
        
        
        
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Description-Content-Type: text/markdown
