CODE_OF_CONDUCT.md
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
versioneer.py
ensemble_md/.coverage
ensemble_md/__init__.py
ensemble_md/_version.py
ensemble_md/ensemble_EXE.py
ensemble_md.egg-info/PKG-INFO
ensemble_md.egg-info/SOURCES.txt
ensemble_md.egg-info/dependency_links.txt
ensemble_md.egg-info/entry_points.txt
ensemble_md.egg-info/requires.txt
ensemble_md.egg-info/top_level.txt
ensemble_md/analysis/analyze_free_energy.py
ensemble_md/analysis/analyze_matrix.py
ensemble_md/analysis/analyze_traj.py
ensemble_md/analysis/msm_analysis.py
ensemble_md/cli/analyze_EEXE.py
ensemble_md/cli/explore_EEXE.py
ensemble_md/cli/run_EEXE.py
ensemble_md/data/README.md
ensemble_md/data/look_and_say.dat
ensemble_md/tests/.coverage
ensemble_md/tests/__init__.py
ensemble_md/tests/test_analyze_matrix.py
ensemble_md/tests/test_analyze_traj.py
ensemble_md/tests/test_ensemble_EXE.py
ensemble_md/tests/test_gmx_parser.py
ensemble_md/tests/test_utils.py
ensemble_md/tests/data/expanded.mdp
ensemble_md/tests/data/sys.gro
ensemble_md/tests/data/sys.top
ensemble_md/tests/data/dhdl/dhdl_0.xvg
ensemble_md/tests/data/dhdl/dhdl_1.xvg
ensemble_md/tests/data/dhdl/dhdl_2.xvg
ensemble_md/tests/data/dhdl/dhdl_3.xvg
ensemble_md/tests/data/log/EXE.log
ensemble_md/tests/data/log/EXE_0.log
ensemble_md/tests/data/log/EXE_1.log
ensemble_md/tests/data/log/EXE_2.log
ensemble_md/tests/data/log/EXE_3.log
ensemble_md/tests/data/log/HREX.log
ensemble_md/tests/data/log/case2_1.log
ensemble_md/tests/data/log/case2_2.log
ensemble_md/tests/data/log/case3.log
ensemble_md/utils/exceptions.py
ensemble_md/utils/gmx_parser.py
ensemble_md/utils/utils.py