LICENSE.txt
MANIFEST.in
README.md
atlas.pdf
graphical_abstract.png
graphical_abstract.tif
setup.cfg
setup.py
versioneer.py
PTools-Docker/Dockerfile
PTools-Docker/README.md
atlas_rbm/__init__.py
atlas_rbm/_version.py
atlas_rbm/atlas.py
atlas_rbm/construct_model_from_genome_graph.py
atlas_rbm/construct_model_from_interaction_network.py
atlas_rbm/construct_model_from_metabolic_network.py
atlas_rbm/construct_model_from_sigma_specificity_network.py
atlas_rbm/export.py
atlas_rbm/simulation.py
atlas_rbm/utils.py
atlas_rbm.egg-info/PKG-INFO
atlas_rbm.egg-info/SOURCES.txt
atlas_rbm.egg-info/dependency_links.txt
atlas_rbm.egg-info/requires.txt
atlas_rbm.egg-info/top_level.txt
cytoscape-sessions/central_carbon.cys
cytoscape-sessions/central_metabolism.png
cytoscape-sessions/ecocyc-v24-enz+tps.cys
cytoscape-sessions/ecocyc-v24-enz+tps.png
cytoscape-sessions/lactose-metabolism-cytoscape-v1.png
cytoscape-sessions/lactose-metabolism-cytoscape-v2.png
cytoscape-sessions/lactose-metabolism-cytoscape-v3.png
cytoscape-sessions/lactose.cys
cytoscape-sessions/network_arq_v1.png
cytoscape-sessions/network_arq_v2.png
cytoscape-sessions/network_arq_v3.png
cytoscape-sessions/network_arq_v4.png
cytoscape-sessions/network_reference.png
cytoscape-sessions/sigma_model_ref_and_variants.cys
cytoscape-sessions/sigma_variants_correlation.cys
cytoscape-sessions/sigma_variants_correlation_data1.png
cytoscape-sessions/sigma_variants_correlation_data2.png
cytoscape-sessions/sigma_variants_correlation_data3.png
cytoscape-sessions/sigma_variants_correlation_data4.png
cytoscape-sessions/yeastcyc-v22-enzymes.cys
cytoscape-sessions/yeastcyc-v22-enzymes.png