.gitignore
LICENSE.txt
README.md
andrew.py
code_for_11-01-2022_shells.py
cube_diagonal_tree.py
fast_geodesic.py
setup.cfg
setup.py
svcco.pypirc
test.py
.github/workflows/static.yml
benchmarking/array_vs_linked_list.py
benchmarking/binary_close.py
benchmarking/build_convexity_distribution_figure.py
benchmarking/build_times_figure.py
benchmarking/corner_recovery.py
benchmarking/cube_cfd.py
benchmarking/figure4c.py
benchmarking/generate_brain_code.py
benchmarking/gif_generator.py
benchmarking/global_pu_time.py
benchmarking/heart_cfd.py
benchmarking/heart_test.py
benchmarking/implicit_accuracy_number_patches.py
benchmarking/implicit_condition_number.py
benchmarking/implicit_figure.py
benchmarking/implicit_trees.py
benchmarking/mesh_vs_patch.py
benchmarking/morphometry_properties.py
benchmarking/patch_functions.py
benchmarking/perfusion.py
benchmarking/point_enclosure.py
benchmarking/result_figure_1.py
benchmarking/reynolds_data.py
benchmarking/smf_geodesic_perfusion.py
benchmarking/test_bifurcation_optimization.py
benchmarking/test_boolean.py
benchmarking/test_cone_build_times.py
benchmarking/test_cube_build_times.py
benchmarking/test_cylinder_build_times.py
benchmarking/test_dodecahedron_build_times.py
benchmarking/test_icosahedron_build_times.py
benchmarking/test_octahedron_build_times.py
benchmarking/test_optimizers.py
benchmarking/test_pyramid_build_times.py
benchmarking/test_sphere_build_times.py
benchmarking/test_tetrahedron_build_times.py
benchmarking/optimization/get_data.py
docs/Makefile
docs/big_cco_cube.png
docs/make.bat
docs/build/doctrees/basics.doctree
docs/build/doctrees/citing.doctree
docs/build/doctrees/contributing.doctree
docs/build/doctrees/environment.pickle
docs/build/doctrees/index.doctree
docs/build/doctrees/install.doctree
docs/build/doctrees/introduction.doctree
docs/build/doctrees/modules.doctree
docs/build/doctrees/svcco.branch_addition.doctree
docs/build/doctrees/svcco.collision.doctree
docs/build/doctrees/svcco.doctree
docs/build/doctrees/svcco.forest_utils.doctree
docs/build/doctrees/svcco.implicit.core.doctree
docs/build/doctrees/svcco.implicit.doctree
docs/build/doctrees/svcco.implicit.kernel.doctree
docs/build/doctrees/svcco.implicit.kernel.kernel_functions.doctree
docs/build/doctrees/svcco.implicit.solver.doctree
docs/build/doctrees/svcco.implicit.solver.solver_functions.doctree
docs/build/doctrees/svcco.implicit.tests.doctree
docs/build/doctrees/svcco.implicit.visualize.doctree
docs/build/doctrees/svcco.sv_interface.ROM.doctree
docs/build/doctrees/svcco.sv_interface.doctree
docs/build/doctrees/svcco.utils.doctree
docs/build/doctrees/svcco.utils.fluid_analysis.doctree
docs/build/doctrees/svcco.utils.gcode.doctree
docs/build/doctrees/svcco.utils.gui.doctree
docs/build/doctrees/svcco.utils.perfusion.doctree
docs/build/doctrees/svcco.utils.remeshing.Linux.doctree
docs/build/doctrees/svcco.utils.remeshing.Windows.doctree
docs/build/doctrees/svcco.utils.remeshing.doctree
docs/build/html/.buildinfo
docs/build/html/basics.html
docs/build/html/citing.html
docs/build/html/contributing.html
docs/build/html/genindex.html
docs/build/html/index.html
docs/build/html/install.html
docs/build/html/introduction.html
docs/build/html/modules.html
docs/build/html/objects.inv
docs/build/html/py-modindex.html
docs/build/html/search.html
docs/build/html/searchindex.js
docs/build/html/svcco.branch_addition.html
docs/build/html/svcco.collision.html
docs/build/html/svcco.forest_utils.html
docs/build/html/svcco.html
docs/build/html/svcco.implicit.core.html
docs/build/html/svcco.implicit.html
docs/build/html/svcco.implicit.kernel.html
docs/build/html/svcco.implicit.kernel.kernel_functions.html
docs/build/html/svcco.implicit.solver.html
docs/build/html/svcco.implicit.solver.solver_functions.html
docs/build/html/svcco.implicit.tests.html
docs/build/html/svcco.implicit.visualize.html
docs/build/html/svcco.sv_interface.ROM.html
docs/build/html/svcco.sv_interface.html
docs/build/html/svcco.utils.fluid_analysis.html
docs/build/html/svcco.utils.gcode.html
docs/build/html/svcco.utils.gui.html
docs/build/html/svcco.utils.html
docs/build/html/svcco.utils.perfusion.html
docs/build/html/svcco.utils.remeshing.Linux.html
docs/build/html/svcco.utils.remeshing.Windows.html
docs/build/html/svcco.utils.remeshing.html
docs/build/html/_modules/index.html
docs/build/html/_modules/svcco/test_rotation.html
docs/build/html/_modules/svcco/tree.html
docs/build/html/_modules/svcco/branch_addition/add_bifurcation.html
docs/build/html/_modules/svcco/branch_addition/add_branches.html
docs/build/html/_modules/svcco/branch_addition/add_branches_v2.html
docs/build/html/_modules/svcco/branch_addition/add_branches_v3.html
docs/build/html/_modules/svcco/branch_addition/add_depths.html
docs/build/html/_modules/svcco/branch_addition/add_edge.html
docs/build/html/_modules/svcco/branch_addition/add_flow.html
docs/build/html/_modules/svcco/branch_addition/add_geodesic_path.html
docs/build/html/_modules/svcco/branch_addition/basis.html
docs/build/html/_modules/svcco/branch_addition/calculate_length.html
docs/build/html/_modules/svcco/branch_addition/calculate_radii.html
docs/build/html/_modules/svcco/branch_addition/check.html
docs/build/html/_modules/svcco/branch_addition/close.html
docs/build/html/_modules/svcco/branch_addition/finite_difference.html
docs/build/html/_modules/svcco/branch_addition/geodesic.html
docs/build/html/_modules/svcco/branch_addition/get_path.html
docs/build/html/_modules/svcco/branch_addition/get_point.html
docs/build/html/_modules/svcco/branch_addition/local_func_v5.html
docs/build/html/_modules/svcco/branch_addition/local_func_v6.html
docs/build/html/_modules/svcco/branch_addition/local_func_v7.html
docs/build/html/_modules/svcco/branch_addition/sample_triad.html
docs/build/html/_modules/svcco/branch_addition/set_root.html
docs/build/html/_modules/svcco/branch_addition/set_root_homogeneous_nonconvex.html
docs/build/html/_modules/svcco/branch_addition/triangle.html
docs/build/html/_modules/svcco/branch_addition/update.html
docs/build/html/_modules/svcco/branch_addition/update_geodesic.html
docs/build/html/_modules/svcco/collision/collision.html
docs/build/html/_modules/svcco/collision/obb.html
docs/build/html/_modules/svcco/collision/sphere_proximity.html
docs/build/html/_modules/svcco/forest_utils/compete_add.html
docs/build/html/_modules/svcco/forest_utils/connect.html
docs/build/html/_modules/svcco/forest_utils/connect_collision.html
docs/build/html/_modules/svcco/forest_utils/optimize_connection_v2.html
docs/build/html/_modules/svcco/forest_utils/smooth.html
docs/build/html/_modules/svcco/implicit/derivative.html
docs/build/html/_modules/svcco/implicit/implicit.html
docs/build/html/_modules/svcco/implicit/load.html
docs/build/html/_modules/svcco/implicit/sampling.html
docs/build/html/_modules/svcco/implicit/weingarten_map.html
docs/build/html/_modules/svcco/implicit/core/a_matrix.html
docs/build/html/_modules/svcco/implicit/core/h_matrix.html
docs/build/html/_modules/svcco/implicit/core/m_matrix.html
docs/build/html/_modules/svcco/implicit/core/n_matrix.html
docs/build/html/_modules/svcco/implicit/core/utils.html
docs/build/html/_modules/svcco/implicit/kernel/kernel.html
docs/build/html/_modules/svcco/implicit/kernel/kernel_functions/fitness.html
docs/build/html/_modules/svcco/implicit/kernel/kernel_functions/grad.html
docs/build/html/_modules/svcco/implicit/kernel/kernel_functions/hess.html
docs/build/html/_modules/svcco/implicit/solver/solver.html
docs/build/html/_modules/svcco/implicit/solver/solver_functions/init_normals_given.html
docs/build/html/_modules/svcco/implicit/solver/solver_functions/init_normals_not_given.html
docs/build/html/_modules/svcco/implicit/tests/bumpy_sphere.html
docs/build/html/_modules/svcco/implicit/visualize/visualize.html
docs/build/html/_modules/svcco/sv_interface/build_files.html
docs/build/html/_modules/svcco/sv_interface/get_sv_data.html
docs/build/html/_modules/svcco/sv_interface/locate.html
docs/build/html/_modules/svcco/sv_interface/options.html
docs/build/html/_modules/svcco/sv_interface/waveform.html
docs/build/html/_modules/svcco/sv_interface/ROM/centerlines.html
docs/build/html/_modules/svcco/sv_interface/ROM/generate_1d_mesh.html
docs/build/html/_modules/svcco/sv_interface/ROM/io_0d.html
docs/build/html/_modules/svcco/sv_interface/ROM/io_1d.html
docs/build/html/_modules/svcco/sv_interface/ROM/io_headers.html
docs/build/html/_modules/svcco/sv_interface/ROM/manage.html
docs/build/html/_modules/svcco/sv_interface/ROM/mesh.html
docs/build/html/_modules/svcco/sv_interface/ROM/models.html
docs/build/html/_modules/svcco/sv_interface/ROM/parameters.html
docs/build/html/_modules/svcco/sv_interface/ROM/utils.html
docs/build/html/_modules/svcco/utils/fluid_analysis/reynolds.html
docs/build/html/_modules/svcco/utils/fluid_analysis/wss.html
docs/build/html/_modules/svcco/utils/gcode/gcode.html
docs/build/html/_modules/svcco/utils/gui/gui_helper.html
docs/build/html/_modules/svcco/utils/gui/spline_helper.html
docs/build/html/_modules/svcco/utils/perfusion/fast_geodesic.html
docs/build/html/_modules/svcco/utils/remeshing/remesh.html
docs/build/html/_plots/cube_with_normals.html
docs/build/html/_plots/cube_without_normals.html
docs/build/html/_plots/pyvista.html
docs/build/html/_sources/basics.rst.txt
docs/build/html/_sources/citing.rst.txt
docs/build/html/_sources/contributing.rst.txt
docs/build/html/_sources/index.rst.txt
docs/build/html/_sources/install.rst.txt
docs/build/html/_sources/introduction.rst.txt
docs/build/html/_sources/modules.rst.txt
docs/build/html/_sources/svcco.branch_addition.rst.txt
docs/build/html/_sources/svcco.collision.rst.txt
docs/build/html/_sources/svcco.forest_utils.rst.txt
docs/build/html/_sources/svcco.implicit.core.rst.txt
docs/build/html/_sources/svcco.implicit.kernel.kernel_functions.rst.txt
docs/build/html/_sources/svcco.implicit.kernel.rst.txt
docs/build/html/_sources/svcco.implicit.rst.txt
docs/build/html/_sources/svcco.implicit.solver.rst.txt
docs/build/html/_sources/svcco.implicit.solver.solver_functions.rst.txt
docs/build/html/_sources/svcco.implicit.tests.rst.txt
docs/build/html/_sources/svcco.implicit.visualize.rst.txt
docs/build/html/_sources/svcco.rst.txt
docs/build/html/_sources/svcco.sv_interface.ROM.rst.txt
docs/build/html/_sources/svcco.sv_interface.rst.txt
docs/build/html/_sources/svcco.utils.fluid_analysis.rst.txt
docs/build/html/_sources/svcco.utils.gcode.rst.txt
docs/build/html/_sources/svcco.utils.gui.rst.txt
docs/build/html/_sources/svcco.utils.perfusion.rst.txt
docs/build/html/_sources/svcco.utils.remeshing.Linux.rst.txt
docs/build/html/_sources/svcco.utils.remeshing.Windows.rst.txt
docs/build/html/_sources/svcco.utils.remeshing.rst.txt
docs/build/html/_sources/svcco.utils.rst.txt
docs/build/html/_static/_sphinx_javascript_frameworks_compat.js
docs/build/html/_static/alabaster.css
docs/build/html/_static/basic.css
docs/build/html/_static/classic.css
docs/build/html/_static/custom.css
docs/build/html/_static/doctools.js
docs/build/html/_static/documentation_options.js
docs/build/html/_static/file.png
docs/build/html/_static/jquery-3.6.0.js
docs/build/html/_static/jquery.js
docs/build/html/_static/language_data.js
docs/build/html/_static/minus.png
docs/build/html/_static/plus.png
docs/build/html/_static/pygments.css
docs/build/html/_static/searchtools.js
docs/build/html/_static/sidebar.js
docs/build/html/_static/sphinx_highlight.js
docs/build/html/_static/underscore-1.13.1.js
docs/build/html/_static/underscore.js
docs/source/basics.rst
docs/source/citing.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/index.rst
docs/source/install.rst
docs/source/introduction.rst
docs/source/modules.rst
docs/source/svcco.branch_addition.rst
docs/source/svcco.collision.rst
docs/source/svcco.forest_utils.rst
docs/source/svcco.implicit.core.rst
docs/source/svcco.implicit.kernel.kernel_functions.rst
docs/source/svcco.implicit.kernel.rst
docs/source/svcco.implicit.rst
docs/source/svcco.implicit.solver.rst
docs/source/svcco.implicit.solver.solver_functions.rst
docs/source/svcco.implicit.tests.rst
docs/source/svcco.implicit.visualize.rst
docs/source/svcco.rst
docs/source/svcco.sv_interface.ROM.rst
docs/source/svcco.sv_interface.rst
docs/source/svcco.utils.fluid_analysis.rst
docs/source/svcco.utils.gcode.rst
docs/source/svcco.utils.gui.rst
docs/source/svcco.utils.perfusion.rst
docs/source/svcco.utils.remeshing.Linux.rst
docs/source/svcco.utils.remeshing.Windows.rst
docs/source/svcco.utils.remeshing.rst
docs/source/svcco.utils.rst
svcco/__init__.py
svcco/test_rotation.py
svcco/tree.py
svcco.egg-info/PKG-INFO
svcco.egg-info/SOURCES.txt
svcco.egg-info/dependency_links.txt
svcco.egg-info/not-zip-safe
svcco.egg-info/requires.txt
svcco.egg-info/top_level.txt
svcco/branch_addition/__init__.py
svcco/branch_addition/add_bifurcation.py
svcco/branch_addition/add_branches.py
svcco/branch_addition/add_branches_v2.py
svcco/branch_addition/add_branches_v3.py
svcco/branch_addition/add_depths.py
svcco/branch_addition/add_edge.py
svcco/branch_addition/add_flow.py
svcco/branch_addition/add_geodesic_path.py
svcco/branch_addition/basis.py
svcco/branch_addition/calculate_length.py
svcco/branch_addition/calculate_radii.py
svcco/branch_addition/check.py
svcco/branch_addition/close.py
svcco/branch_addition/finite_difference.py
svcco/branch_addition/geodesic.py
svcco/branch_addition/get_path.py
svcco/branch_addition/get_point.py
svcco/branch_addition/local_func_v5.py
svcco/branch_addition/local_func_v6.py
svcco/branch_addition/local_func_v7.py
svcco/branch_addition/sample_triad.py
svcco/branch_addition/set_root.py
svcco/branch_addition/set_root_homogeneous_nonconvex.py
svcco/branch_addition/triangle.py
svcco/branch_addition/update.py
svcco/branch_addition/update_geodesic.py
svcco/collision/__init__.py
svcco/collision/collision.py
svcco/collision/obb.py
svcco/collision/obb_unit_tests.py
svcco/collision/sphere_proximity.py
svcco/collision/sphere_proximity_unit_tests.py
svcco/forest_utils/__init__.py
svcco/forest_utils/compete_add.py
svcco/forest_utils/connect.py
svcco/forest_utils/connect_collision.py
svcco/forest_utils/optimize_connection.py
svcco/forest_utils/optimize_connection_v2.py
svcco/forest_utils/smooth.py
svcco/implicit/__init__.py
svcco/implicit/delete
svcco/implicit/derivative.py
svcco/implicit/implicit.py
svcco/implicit/load.py
svcco/implicit/sampling.py
svcco/implicit/weingarten_map.py
svcco/implicit/core/__init__.py
svcco/implicit/core/a_matrix.py
svcco/implicit/core/h_matrix.py
svcco/implicit/core/m_matrix.py
svcco/implicit/core/n_matrix.py
svcco/implicit/core/utils.py
svcco/implicit/kernel/__init__.py
svcco/implicit/kernel/kernel.py
svcco/implicit/kernel/kernel_functions/__init__.py
svcco/implicit/kernel/kernel_functions/delete
svcco/implicit/kernel/kernel_functions/fitness.py
svcco/implicit/kernel/kernel_functions/grad.py
svcco/implicit/kernel/kernel_functions/hess.py
svcco/implicit/solver/__init__.py
svcco/implicit/solver/solver.py
svcco/implicit/solver/solver_functions/__init__.py
svcco/implicit/solver/solver_functions/delete
svcco/implicit/solver/solver_functions/init_normals_given.py
svcco/implicit/solver/solver_functions/init_normals_not_given.py
svcco/implicit/tests/__init__.py
svcco/implicit/tests/bumpy_sphere.py
svcco/implicit/tests/heart.py
svcco/implicit/tests/heart_normals_unique.csv
svcco/implicit/tests/heart_points_unique.csv
svcco/implicit/visualize/__init__.py
svcco/implicit/visualize/delete
svcco/implicit/visualize/visualize.py
svcco/sv_construction_modules/centerline.txt
svcco/sv_construction_modules/contour.txt
svcco/sv_construction_modules/geometry.txt
svcco/sv_construction_modules/loft.txt
svcco/sv_construction_modules/mesh.txt
svcco/sv_construction_modules/paths.txt
svcco/sv_construction_modules/presolver.txt
svcco/sv_construction_modules/setup.txt
svcco/sv_construction_modules/solid.txt
svcco/sv_construction_modules/solver.txt
svcco/sv_interface/__init__.py
svcco/sv_interface/build_0d_run_script.py
svcco/sv_interface/build_files.py
svcco/sv_interface/build_results.py
svcco/sv_interface/centerline.py
svcco/sv_interface/contour.py
svcco/sv_interface/delete
svcco/sv_interface/export_3d_only.py
svcco/sv_interface/flow.py
svcco/sv_interface/geometry.py
svcco/sv_interface/get_sv_data.py
svcco/sv_interface/locate.py
svcco/sv_interface/loft.py
svcco/sv_interface/mesh.py
svcco/sv_interface/options.py
svcco/sv_interface/paths.py
svcco/sv_interface/presolver.py
svcco/sv_interface/rom.py
svcco/sv_interface/setup.py
svcco/sv_interface/solid.py
svcco/sv_interface/solver.py
svcco/sv_interface/sv_install_function.py
svcco/sv_interface/view_0d_result_plots.py
svcco/sv_interface/waveform.py
svcco/sv_interface/Post/1D_to_3D_projection.py
svcco/sv_interface/Post/__init__.py
svcco/sv_interface/Post/asymptotic_pressure.py
svcco/sv_interface/Post/bc_0d.py
svcco/sv_interface/Post/check_bc.py
svcco/sv_interface/Post/common.py
svcco/sv_interface/Post/compare_1d.py
svcco/sv_interface/Post/compare_3d.py
svcco/sv_interface/Post/compare_centerline_path.py
svcco/sv_interface/Post/cover.py
svcco/sv_interface/Post/create_db_from_local.py
svcco/sv_interface/Post/fix_faceid.py
svcco/sv_interface/Post/fix_scale.py
svcco/sv_interface/Post/fix_surf_discr.py
svcco/sv_interface/Post/fix_surf_displacement.py
svcco/sv_interface/Post/fix_surf_id.py
svcco/sv_interface/Post/fix_surf_mesh.py
svcco/sv_interface/Post/fix_surf_orientation.py
svcco/sv_interface/Post/fix_time.py
svcco/sv_interface/Post/get_3d.py
svcco/sv_interface/Post/get_bc_integrals.py
svcco/sv_interface/Post/get_bcs.py
svcco/sv_interface/Post/get_branches_bifurcations.py
svcco/sv_interface/Post/get_centerline.py
svcco/sv_interface/Post/get_database.py
svcco/sv_interface/Post/get_inventory.py
svcco/sv_interface/Post/get_mean_flow_3d.py
svcco/sv_interface/Post/get_rom.py
svcco/sv_interface/Post/get_statistics_1d.py
svcco/sv_interface/Post/get_statistics_3d.py
svcco/sv_interface/Post/get_statistics_bc.py
svcco/sv_interface/Post/get_sv_meshes.py
svcco/sv_interface/Post/get_sv_project.py
svcco/sv_interface/Post/inflow.py
svcco/sv_interface/Post/lift_laplace.py
svcco/sv_interface/Post/paper_plots.py
svcco/sv_interface/Post/plot_pod.py
svcco/sv_interface/Post/post_process_1d_simulation.py
svcco/sv_interface/Post/postproc.py
svcco/sv_interface/Post/project_1d_3d.py
svcco/sv_interface/Post/simulation_io.py
svcco/sv_interface/Post/sv_get_path_segmentation.py
svcco/sv_interface/Post/vtk_functions.py
svcco/sv_interface/Post/vtk_to_xdmf.py
svcco/sv_interface/ROM/__init__.py
svcco/sv_interface/ROM/centerlines.py
svcco/sv_interface/ROM/generate_1d_mesh.py
svcco/sv_interface/ROM/io_0d.py
svcco/sv_interface/ROM/io_1d.py
svcco/sv_interface/ROM/io_headers.py
svcco/sv_interface/ROM/manage.py
svcco/sv_interface/ROM/mesh.py
svcco/sv_interface/ROM/models.py
svcco/sv_interface/ROM/parameters.py
svcco/sv_interface/ROM/utils.py
svcco/utils/__init__.py
svcco/utils/fluid_analysis/__init__.py
svcco/utils/fluid_analysis/reynolds.py
svcco/utils/fluid_analysis/wss.py
svcco/utils/fluid_analysis/__pycache__/__init__.cpython-37.pyc
svcco/utils/fluid_analysis/__pycache__/reynolds.cpython-37.pyc
svcco/utils/fluid_analysis/__pycache__/wss.cpython-37.pyc
svcco/utils/gcode/__init__.py
svcco/utils/gcode/gcode.py
svcco/utils/gcode/__pycache__/__init__.cpython-37.pyc
svcco/utils/gcode/__pycache__/gcode.cpython-37.pyc
svcco/utils/gui/__init__.py
svcco/utils/gui/gui_helper.py
svcco/utils/gui/spline_helper.py
svcco/utils/gui/__pycache__/gui_helper.cpython-37.pyc
svcco/utils/perfusion/__init__.py
svcco/utils/perfusion/fast_geodesic.py
svcco/utils/remeshing/__init__.py
svcco/utils/remeshing/remesh.py
svcco/utils/remeshing/Linux/__init__.py
svcco/utils/remeshing/Linux/mmg2d_O3
svcco/utils/remeshing/Linux/mmg3d_O3
svcco/utils/remeshing/Linux/mmgs_O3
svcco/utils/remeshing/Mac/mmg2d_O3
svcco/utils/remeshing/Mac/mmg3d_O3
svcco/utils/remeshing/Mac/mmgs_O3
svcco/utils/remeshing/Windows/__init__.py
svcco/utils/remeshing/Windows/mmg2d_O3.exe
svcco/utils/remeshing/Windows/mmg3d_O3.exe
svcco/utils/remeshing/Windows/mmgs_O3.exe